Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Forward (+)

88655494 .. 88658373

Gene Structure 2880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG674600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTCATCTGTTCTAGCACGAACAGGGCGACATCGCCAACGTTATGAGAACAATTTTCGCCTTGTTTCTGGATGTATCCCTTACCGGATAACAGAAGACATCAATGATGAGGATCATAGCAGCAGCAGCAATACCCATATTGAAAACAAGATACAAGTTCTCATGGTTTCTTCACCTGACCGCGACGACCGAGTGTTCCCAAAAGGTGGATGGGAGGATGATGAGACTGTTTTAGAAGCTGCTTGTCGGGAAGCTTTCGAGGAAGCAGGGGTGAAAGGAACGCTAAGAGAAACTCCTCTGGGAGTTTGGGAGTTCAGAAGCAAAAGTAGGCAGAACATGTGCAGCCTGGAAGGAGGCTGCAGAGGCTACATGTTTGCATTAGAGGTAACTGAAGAGCTTCACACCTGGCCAGAGCAGCAAAACCGTGATAGAGAATGGCTAAACATAAAGGAGGCATTTAGAGTGTGCCGGTATGAATGGATGCGTAGGGCACTGGAGCAGTTTCTGAGAGTTATGGCGTCAGATAAGGATGATGATGATGATGGTACTGTGGGAAAAGCAGCTGTAGTACCAGCTGATGAAGTAGTAGTGGATGATCAGATCATGAATCAGATGACAGAATTATCAGGAGAGTACGATGATCGTGAGAATACATTAGAGGACTTAATTGAGCCGGAACCTTGTGGTCCTCGTCCGGCCATGATCTCCATGCCAATGCCATTGCCGTCGCCGGTGTTATCGTTGCCATTGTCATCCAGCAACGTCAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

257

Amino Acids

29.38

Weight (kDa)

4.65

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	52 - 166	1.6e-11	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	206
AccII	CGCG	1 cut(s)	183
AciI	CCGC	1 cut(s)	181
AclI	AACGTT	1 cut(s)	40
AclWI	GGATC	1 cut(s)	120
AcoI	YGGCCR	2 cut(s)	407, 696
AcuI	CTGAAG	1 cut(s)	411
AcyI	GRCGYC	1 cut(s)	518
AfaI	GTAC	3 cut(s)	547, 570, 635
AfiI	CCNNNNNNNGG	1 cut(s)	206
AflIII	ACRYGT	2 cut(s)	336, 369
AgsI	TTSAA	1 cut(s)	143
AjnI	CCWGG	2 cut(s)	345, 404
AluBI	AGCT	5 cut(s)	239, 254, 397, 563, 575
AluI	AGCT	5 cut(s)	239, 254, 397, 563, 575
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	1 cut(s)	120
AlwNI	CAGNNNCTG	1 cut(s)	505
AoxI	GGCC	2 cut(s)	407, 696
ApeKI	GCWGC	8 cut(s)	120, 123, 126, 239, 342, 357, 415, 560
Asp700I	GAANNNNTTC	1 cut(s)	396
AspS9I	GGNCC	1 cut(s)	686
AsuHPI	GGTGA	2 cut(s)	165, 283
AvaII	GGWCC	1 cut(s)	686
BaeGI	GKGCMC	1 cut(s)	493
BalI	TGGCCA	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	8 cut(s)	132, 135, 138, 226, 344, 354, 427, 572
BccI	CCATC	2 cut(s)	204, 536
BceAI	ACGGC	1 cut(s)	709
BciT130I	CCWGG	2 cut(s)	347, 406
BciVI	GTATCC	1 cut(s)	86
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	2 cut(s)	358, 564
BfuI	GTATCC	1 cut(s)	86
BisI	GCNGC	8 cut(s)	121, 124, 127, 240, 343, 358, 416, 561
BlsI	GCNGC	8 cut(s)	122, 125, 128, 241, 344, 359, 417, 562
Bme1390I	CCNGG	2 cut(s)	347, 406
Bme18I	GGWCC	1 cut(s)	686
BmgT120I	GGNCC	1 cut(s)	686
BmiI	GGNNCC	1 cut(s)	678
BmrFI	CCNGG	2 cut(s)	347, 406
BmsI	GCATC	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	515
BsaBI	GATNNNNATC	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	518
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse118I	RCCGGY	2 cut(s)	468, 730
Bse1I	ACTGG	1 cut(s)	498
Bse3DI	GCAATG	1 cut(s)	719
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	347, 406
BseGI	GGATG	7 cut(s)	77, 215, 223, 486, 535, 598, 752
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMI	GCAATG	1 cut(s)	719
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	1 cut(s)	285
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	8 cut(s)	132, 135, 138, 226, 344, 354, 427, 572
BsgI	GTGCAG	1 cut(s)	361
Bsh1236I	CGCG	1 cut(s)	183
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	409, 698
BsiEI	CGRYCG	1 cut(s)	190
BsiSI	CCGG	5 cut(s)	85, 469, 674, 695, 731
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	409, 698
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp143I	GATC	6 cut(s)	112, 595, 600, 640, 702, 767
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	2 cut(s)	409, 698
BspCNI	CTCAG	1 cut(s)	498
BspFNI	CGCG	1 cut(s)	183
BspHI	TCATGA	2 cut(s)	603, 770
BspLI	GGNNCC	1 cut(s)	678
BspMAI	CTGCAG	1 cut(s)	362
BspPI	GGATC	1 cut(s)	120
BspQI	GCTCTTC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	719
BsrFI	RCCGGY	2 cut(s)	468, 730
BsrI	ACTGG	1 cut(s)	498
BssAI	RCCGGY	2 cut(s)	468, 730
BssMI	GATC	6 cut(s)	112, 595, 600, 640, 702, 767
BssNI	GRCGYC	1 cut(s)	518
Bst2UI	CCWGG	2 cut(s)	347, 406
Bst4CI	ACNGT	3 cut(s)	229, 425, 550
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	1 cut(s)	518
BstDEI	CTNAG	2 cut(s)	284, 506
BstF5I	GGATG	7 cut(s)	77, 215, 223, 486, 535, 598, 752
BstFNI	CGCG	1 cut(s)	183
BstKTI	GATC	6 cut(s)	115, 598, 603, 643, 705, 770
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	6 cut(s)	112, 595, 600, 640, 702, 767
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 363, 415
BstNI	CCWGG	2 cut(s)	347, 406
BstNSI	RCATGY	2 cut(s)	340, 373
BstSCI	CCNGG	2 cut(s)	345, 404
BstSFI	CTRYAG	2 cut(s)	358, 564
BstSLI	GKGCMC	1 cut(s)	493
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	8 cut(s)	132, 135, 138, 226, 344, 354, 427, 572
BstV2I	GAAGAC	1 cut(s)	102
BsuI	GTATCC	1 cut(s)	86
BsuRI	GGCC	2 cut(s)	409, 698
BtgZI	GCGATG	1 cut(s)	17
BtsCI	GGATG	7 cut(s)	77, 215, 223, 486, 535, 598, 752
BtsIMutI	CAGTG	1 cut(s)	491
CaiI	CAGNNNCTG	1 cut(s)	505
CciI	TCATGA	2 cut(s)	603, 770
Cfr10I	RCCGGY	2 cut(s)	468, 730
Cfr13I	GGNCC	1 cut(s)	686
CseI	GACGC	1 cut(s)	507
Csp6I	GTAC	3 cut(s)	546, 569, 634
CviAII	CATG	7 cut(s)	163, 337, 370, 604, 700, 709, 771
CviQI	GTAC	3 cut(s)	546, 569, 634
DdeI	CTNAG	2 cut(s)	284, 506
DpnI	GATC	6 cut(s)	114, 597, 602, 642, 704, 769
DpnII	GATC	6 cut(s)	112, 595, 600, 640, 702, 767
EaeI	YGGCCR	2 cut(s)	407, 696
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	686
Eco57I	CTGAAG	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	345, 404
FaeI	CATG	7 cut(s)	166, 340, 373, 607, 703, 712, 774
FatI	CATG	7 cut(s)	162, 336, 369, 603, 699, 708, 770
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	8 cut(s)	121, 124, 127, 240, 343, 358, 416, 561
FokI	GGATG	7 cut(s)	84, 222, 230, 493, 542, 605, 739
Fsp4HI	GCNGC	8 cut(s)	121, 124, 127, 240, 343, 358, 416, 561
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	8 cut(s)	121, 124, 127, 240, 343, 358, 416, 561
GsuI	CTGGAG	1 cut(s)	515
HaeIII	GGCC	2 cut(s)	409, 698
HapII	CCGG	5 cut(s)	85, 469, 674, 695, 731
HgaI	GACGC	1 cut(s)	507
Hin1I	GRCGYC	1 cut(s)	518
Hin1II	CATG	7 cut(s)	166, 340, 373, 607, 703, 712, 774
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	1 cut(s)	607
HpaII	CCGG	5 cut(s)	85, 469, 674, 695, 731
HphI	GGTGA	2 cut(s)	165, 283
Hpy188I	TCNGA	6 cut(s)	317, 507, 523, 600, 612, 767
Hpy188III	TCNNGA	6 cut(s)	69, 248, 604, 627, 644, 771
Hpy99I	CGWCG	2 cut(s)	188, 730
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	3 cut(s)	229, 425, 550
HpyCH4IV	ACGT	2 cut(s)	40, 762
HpyCH4V	TGCA	3 cut(s)	342, 360, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 363, 415
HpyF3I	CTNAG	2 cut(s)	284, 506
HpySE526I	ACGT	2 cut(s)	40, 762
Hsp92I	GRCGYC	1 cut(s)	518
Hsp92II	CATG	7 cut(s)	166, 340, 373, 607, 703, 712, 774
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	6 cut(s)	112, 595, 600, 640, 702, 767
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	496
Lsp1109I	GCAGC	8 cut(s)	132, 135, 138, 226, 344, 354, 427, 572
LweI	GCATC	1 cut(s)	471
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	2 cut(s)	40, 762
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	6 cut(s)	114, 597, 602, 642, 704, 769
MboI	GATC	6 cut(s)	112, 595, 600, 640, 702, 767
MboII	GAAGA	3 cut(s)	107, 162, 404
MhlI	GDGCHC	1 cut(s)	493
MlsI	TGGCCA	1 cut(s)	409
MluCI	AATT	3 cut(s)	52, 620, 666
MluNI	TGGCCA	1 cut(s)	409
Mox20I	TGGCCA	1 cut(s)	409
MroXI	GAANNNNTTC	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	409
MseI	TTAA	1 cut(s)	665
MslI	CAYNNNNRTG	1 cut(s)	713
Msp20I	TGGCCA	1 cut(s)	409
MspA1I	CMGCKG	2 cut(s)	563, 575
MspI	CCGG	5 cut(s)	85, 469, 674, 695, 731
MspR9I	CCNGG	2 cut(s)	347, 406
MvaI	CCWGG	2 cut(s)	347, 406
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	3 cut(s)	126, 363, 415
NdeII	GATC	6 cut(s)	112, 595, 600, 640, 702, 767
NlaIII	CATG	7 cut(s)	166, 340, 373, 607, 703, 712, 774
NlaIV	GGNNCC	1 cut(s)	678
NspI	RCATGY	2 cut(s)	340, 373
PagI	TCATGA	2 cut(s)	603, 770
PciI	ACATGT	2 cut(s)	336, 369
PciSI	GCTCTTC	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	607
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	8 cut(s)	122, 125, 128, 241, 344, 359, 417, 562
PscI	ACATGT	2 cut(s)	336, 369
Psp1406I	AACGTT	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	345, 404
PspGI	CCWGG	2 cut(s)	345, 404
PspN4I	GGNNCC	1 cut(s)	678
PspPI	GGNCC	1 cut(s)	686
PstI	CTGCAG	1 cut(s)	362
PstNI	CAGNNNCTG	1 cut(s)	505
PvuII	CAGCTG	2 cut(s)	563, 575
RsaI	GTAC	3 cut(s)	547, 570, 635
RsaNI	GTAC	3 cut(s)	546, 569, 634
RseI	CAYNNNNRTG	1 cut(s)	713
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	665
SatI	GCNGC	8 cut(s)	121, 124, 127, 240, 343, 358, 416, 561
Sau3AI	GATC	6 cut(s)	112, 595, 600, 640, 702, 767
Sau96I	GGNCC	1 cut(s)	686
ScrFI	CCNGG	2 cut(s)	347, 406
SduI	GDGCHC	1 cut(s)	493
SfaNI	GCATC	1 cut(s)	471
SfcI	CTRYAG	2 cut(s)	358, 564
SgrAI	CRCCGGYG	1 cut(s)	730
SinI	GGWCC	1 cut(s)	686
SmiMI	CAYNNNNRTG	1 cut(s)	713
Sse9I	AATT	3 cut(s)	52, 620, 666
SsiI	CCGC	1 cut(s)	181
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	345, 404
TaaI	ACNGT	3 cut(s)	229, 425, 550
TaiI	ACGT	2 cut(s)	43, 765
TaqI	TCGA	1 cut(s)	258
TaqII	GACCGA	1 cut(s)	204
TasI	AATT	3 cut(s)	52, 620, 666
TfiI	GAWTC	1 cut(s)	607
Tru1I	TTAA	1 cut(s)	665
Tru9I	TTAA	1 cut(s)	665
TscAI	CASTG	1 cut(s)	498
TseI	GCWGC	8 cut(s)	120, 123, 126, 239, 342, 357, 415, 560
TspDTI	ATGAA	3 cut(s)	489, 594, 620
TspRI	CASTG	1 cut(s)	498
Van91I	CCANNNNNTGG	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	686
XceI	RCATGY	2 cut(s)	340, 373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.