Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Forward (+)

11005195 .. 11008878

Gene Structure 3684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1143100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCTTGTTTAACGGCAAGAACAGGGCGGCAGAGACAGCGCTACGACGGTCATTTGAGGCTTGTTTCAGGGTGTATTCCTTATAAGTTTGAAAAGATTGCTGGCGGTTGCAGTGGCAATATAGAGCAAAAATTGCTTGTTCTCATGATTTCTTCACCAAATCGGGATGATCTTGTGTTTCCAAAGGGAGGATGGGAGGATGACGAAACCATGAGGGAAGCTGCCTGTCGCGAGGCCTTGGAGGAAGCAGGAGTGAAGGGAGTTCTTGATGATAATCCACTGGGAGTTTGGGAGTTTAGAAGCAAGAGCAAACAGAACAGCTGCAGTCTGCAAGGAGGTTGTAAAGGTTTCATGTTTGCAATGGAGGTGACTGAGGAGCTCGATTCCTGGCCTGAGCAGGCTAACTATGGAAGGAAATGGCTCACCATAGAAGAAGCATTCAGATTCTGTCGTTATGACTGGATGCGAGAAGCGCTAGGAAAACTTTTGACAACCCTATCAAAAAGCAGGGAGAATAACACAAGAAATGAACTGGAAGAACTTCCTTTGAGGACAATCTCCGAAATTGGATTAGAACATCCAATGTCATCATCACCGGTGCGCTTTGCTAATCATTCCAGTATCCAACAGCTTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

214

Amino Acids

24.16

Weight (kDa)

5.76

Isoelectric Point (pI)

59.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	47 - 155	7.7e-10	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	84
AccII	CGCG	1 cut(s)	231
AciI	CCGC	2 cut(s)	28, 105
AfeI	AGCGCT	2 cut(s)	41, 474
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgeI	ACCGGT	1 cut(s)	595
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	386
AluBI	AGCT	5 cut(s)	221, 321, 379, 631, 638
AluI	AGCT	5 cut(s)	221, 321, 379, 631, 638
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	28
AlwNI	CAGNNNCTG	1 cut(s)	447
Aor51HI	AGCGCT	2 cut(s)	41, 474
AoxI	GGCC	2 cut(s)	234, 389
ApeKI	GCWGC	3 cut(s)	221, 321, 635
AsiGI	ACCGGT	1 cut(s)	595
Asp700I	GAANNNNTTC	1 cut(s)	540
AspLEI	GCGC	3 cut(s)	42, 475, 603
AsuHPI	GGTGA	4 cut(s)	147, 379, 415, 585
BanII	GRGCYC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	208, 308
BccI	CCATC	1 cut(s)	186
BceAI	ACGGC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	388
BciVI	GTATCC	1 cut(s)	632
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	1 cut(s)	322
BfoI	RGCGCY	2 cut(s)	43, 476
BfuI	GTATCC	1 cut(s)	632
BisI	GCNGC	4 cut(s)	29, 222, 322, 636
BlsI	GCNGC	4 cut(s)	30, 223, 323, 637
Bme1390I	CCNGG	1 cut(s)	388
BmrFI	CCNGG	1 cut(s)	388
BmrI	ACTGGG	1 cut(s)	290
BmsI	GCATC	1 cut(s)	453
BmuI	ACTGGG	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	393
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse118I	RCCGGY	1 cut(s)	595
Bse1I	ACTGG	4 cut(s)	285, 464, 537, 618
Bse3DI	GCAATG	1 cut(s)	366
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	388
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	5 cut(s)	172, 197, 205, 468, 577
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	2 cut(s)	363, 384
BseNI	ACTGG	4 cut(s)	285, 464, 537, 618
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	2 cut(s)	208, 308
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	236, 391
BshTI	ACCGGT	1 cut(s)	595
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	596
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	236, 391
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	1 cut(s)	169
Bsp68I	TCGCGA	1 cut(s)	231
BspACI	CCGC	2 cut(s)	28, 105
BspANI	GGCC	2 cut(s)	236, 391
BspCNI	CTCAG	2 cut(s)	364, 385
BspFNI	CGCG	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	366
BsrFI	RCCGGY	1 cut(s)	595
BsrI	ACTGG	4 cut(s)	285, 464, 537, 618
BssAI	RCCGGY	1 cut(s)	595
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstC8I	GCNNGC	3 cut(s)	103, 399, 633
BstDEI	CTNAG	2 cut(s)	372, 393
BstF5I	GGATG	5 cut(s)	172, 197, 205, 468, 577
BstFNI	CGCG	1 cut(s)	231
BstH2I	RGCGCY	2 cut(s)	43, 476
BstHHI	GCGC	3 cut(s)	42, 475, 603
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 133, 472
BstNI	CCWGG	1 cut(s)	388
BstSCI	CCNGG	1 cut(s)	386
BstSFI	CTRYAG	1 cut(s)	322
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	208, 308
BsuI	GTATCC	1 cut(s)	632
BsuRI	GGCC	2 cut(s)	236, 391
BtsCI	GGATG	5 cut(s)	172, 197, 205, 468, 577
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	2 cut(s)	118, 278
BtuMI	TCGCGA	1 cut(s)	231
Cac8I	GCNNGC	3 cut(s)	103, 399, 633
CaiI	CAGNNNCTG	1 cut(s)	447
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	3 cut(s)	42, 475, 603
Cfr10I	RCCGGY	1 cut(s)	595
CspAI	ACCGGT	1 cut(s)	595
CviAII	CATG	3 cut(s)	145, 211, 352
DdeI	CTNAG	2 cut(s)	372, 393
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Ecl136II	GAGCTC	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	237
Eco147I	AGGCCT	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	381
Eco47III	AGCGCT	2 cut(s)	41, 474
Eco53kI	GAGCTC	1 cut(s)	379
EcoICRI	GAGCTC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	386
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	3 cut(s)	148, 214, 355
FaiI	YATR	8 cut(s)	84, 122, 146, 212, 353, 408, 428, 456
FatI	CATG	3 cut(s)	144, 210, 351
Fnu4HI	GCNGC	4 cut(s)	29, 222, 322, 636
FokI	GGATG	5 cut(s)	179, 204, 212, 475, 564
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	4 cut(s)	29, 222, 322, 636
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	3 cut(s)	41, 474, 602
GluI	GCNGC	4 cut(s)	29, 222, 322, 636
HaeII	RGCGCY	2 cut(s)	43, 476
HaeIII	GGCC	2 cut(s)	236, 391
HapII	CCGG	1 cut(s)	596
HhaI	GCGC	3 cut(s)	42, 475, 603
Hin1II	CATG	3 cut(s)	148, 214, 355
Hin6I	GCGC	3 cut(s)	40, 473, 601
HinP1I	GCGC	3 cut(s)	40, 473, 601
HinfI	GANTC	2 cut(s)	383, 444
HpaII	CCGG	1 cut(s)	596
HphI	GGTGA	4 cut(s)	147, 379, 415, 585
Hpy188I	TCNGA	2 cut(s)	443, 562
Hpy188III	TCNNGA	4 cut(s)	145, 164, 230, 266
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	250, 405
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4V	TGCA	5 cut(s)	111, 324, 331, 359, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 133, 472
HpyF3I	CTNAG	2 cut(s)	372, 393
Hsp92II	CATG	3 cut(s)	148, 214, 355
HspAI	GCGC	3 cut(s)	40, 473, 601
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	2 cut(s)	208, 308
LweI	GCATC	1 cut(s)	453
MaeI	CTAG	1 cut(s)	476
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	3 cut(s)	144, 443, 548
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	2 cut(s)	131, 564
MroXI	GAANNNNTTC	1 cut(s)	540
MseI	TTAA	2 cut(s)	11, 640
MspA1I	CMGCKG	1 cut(s)	321
MspI	CCGG	1 cut(s)	596
MspR9I	CCNGG	1 cut(s)	388
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	1 cut(s)	388
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	3 cut(s)	37, 133, 472
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	3 cut(s)	148, 214, 355
NmuCI	GTSAC	1 cut(s)	367
NruI	TCGCGA	1 cut(s)	231
PagI	TCATGA	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	236
PctI	GAATGC	1 cut(s)	437
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	2 cut(s)	383, 444
PinAI	ACCGGT	1 cut(s)	595
PkrI	GCNGC	4 cut(s)	30, 223, 323, 637
PsiI	TTATAA	1 cut(s)	84
Psp124BI	GAGCTC	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	447
PvuII	CAGCTG	1 cut(s)	321
RruI	TCGCGA	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	11, 640
SatI	GCNGC	4 cut(s)	29, 222, 322, 636
Sau3AI	GATC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	388
SduI	GDGCHC	1 cut(s)	381
SetI	ASST	8 cut(s)	223, 323, 340, 349, 369, 381, 633, 640
SfaNI	GCATC	1 cut(s)	453
SfcI	CTRYAG	1 cut(s)	322
SgrAI	CRCCGGYG	1 cut(s)	595
Sse9I	AATT	2 cut(s)	131, 564
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	2 cut(s)	28, 105
SspMI	CTAG	1 cut(s)	476
SstI	GAGCTC	1 cut(s)	381
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	386
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	50
TaqI	TCGA	1 cut(s)	381
TasI	AATT	2 cut(s)	131, 564
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	2 cut(s)	383, 444
Tru1I	TTAA	2 cut(s)	11, 640
Tru9I	TTAA	2 cut(s)	11, 640
TscAI	CASTG	2 cut(s)	118, 285
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	3 cut(s)	221, 321, 635
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	2 cut(s)	340, 543
TspRI	CASTG	2 cut(s)	118, 285
XcmI	CCANNNNNNNNNTGG	2 cut(s)	189, 285
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.