Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Forward (+)

10105509 .. 10109473

Gene Structure 3965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1132800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTCTTATCTAACGGCAAGAACAGGGCGGCAGAGGCAGCGCTACGACGGTCATTTGAGGCTTGTTTCGGGGTGTATTCCTTATAGGTTTGAAAAGAGTGATGGCAGTTGCAATGGCAGTATAGAGCAAAAATTGCTTGTTCTCATGATTTCTTCTCCAAGTCGGGACGATCTTGTGTTTCCAAAGGGTGGATGGGAGGATGACGAAACCATGAGCGAAGCTGCCTGTCGCGAGGCCTTAGAGGAAGCCGGAGTGAAAGGAGTTCTTGGTGACAATCCACTGGGAGCTTGGGAGTATAGAAGCAAGAGCAAACAGAAGAGCTGCAGTCTGCAAGGAGGTTGTAAAGGTTTCATGTTTGCAATGGAGGTGACTGAGGAACTTGATTCCTGGCCCGAGCAGGCTAACTATGGAAGGAAATGGCTCACAATAGAAGAAGCATTCAGATCCTGTCGTTATGACTGGATGCGAGAAGCGCTACGAAAATTTACAACACCTCTCTCGGAGACCAGGGAAAATGACACAAGGAAAGAACTGGATGAACTTCCTTTGAGGCCAATCTCAGAAATTGGATCAGAACATCCAAATCCAATGTCATCATCGTCAACGTCCTTTGCTAATCATCCCAGCATACAGCAGCTTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

216

Amino Acids

24.33

Weight (kDa)

5.41

Isoelectric Point (pI)

61.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	47 - 161	9.3e-10	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccII	CGCG	1 cut(s)	231
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	2 cut(s)	438, 577
AcsI	RAATTY	1 cut(s)	482
AfeI	AGCGCT	2 cut(s)	41, 474
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	2 cut(s)	386, 506
AluBI	AGCT	5 cut(s)	221, 287, 321, 637, 644
AluI	AGCT	5 cut(s)	221, 287, 321, 637, 644
Alw26I	GTCTC	1 cut(s)	497
AlwI	GGATC	2 cut(s)	438, 577
AlwNI	CAGNNNCTG	1 cut(s)	447
Ama87I	CYCGRG	1 cut(s)	392
Aor51HI	AGCGCT	2 cut(s)	41, 474
AoxI	GGCC	3 cut(s)	234, 389, 551
ApeKI	GCWGC	5 cut(s)	37, 221, 321, 634, 641
ApoI	RAATTY	1 cut(s)	482
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
AspLEI	GCGC	2 cut(s)	42, 475
AspS9I	GGNCC	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	281, 379
AvaI	CYCGRG	1 cut(s)	392
BbvI	GCAGC	3 cut(s)	49, 208, 308
BccI	CCATC	2 cut(s)	95, 186
BceAI	ACGGC	1 cut(s)	30
BciT130I	CCWGG	2 cut(s)	388, 508
BcoDI	GTCTC	1 cut(s)	497
BfmI	CTRYAG	1 cut(s)	322
BfoI	RGCGCY	2 cut(s)	43, 476
BisI	GCNGC	6 cut(s)	29, 38, 222, 322, 635, 642
BlsI	GCNGC	6 cut(s)	30, 39, 223, 323, 636, 643
Bme1390I	CCNGG	2 cut(s)	388, 508
BmeT110I	CYCGRG	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	390
BmrFI	CCNGG	2 cut(s)	388, 508
BmrI	ACTGGG	1 cut(s)	290
BmsI	GCATC	1 cut(s)	453
BmuI	ACTGGG	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	3 cut(s)	285, 464, 537
Bse3DI	GCAATG	2 cut(s)	118, 366
BseBI	CCWGG	2 cut(s)	388, 508
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	6 cut(s)	197, 205, 468, 541, 577, 619
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMI	GCAATG	2 cut(s)	118, 366
BseMII	CTCAG	2 cut(s)	363, 573
BseNI	ACTGG	3 cut(s)	285, 464, 537
BseXI	GCAGC	3 cut(s)	49, 208, 308
BseYI	CCCAGC	1 cut(s)	623
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	3 cut(s)	236, 391, 553
BsiHKCI	CYCGRG	1 cut(s)	392
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	3 cut(s)	236, 391, 553
Bso31I	GGTCTC	1 cut(s)	497
BsoBI	CYCGRG	1 cut(s)	392
Bsp143I	GATC	3 cut(s)	169, 443, 569
Bsp68I	TCGCGA	1 cut(s)	231
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	3 cut(s)	236, 391, 553
BspCNI	CTCAG	2 cut(s)	364, 572
BspFNI	CGCG	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	326
BspPI	GGATC	2 cut(s)	438, 577
BspQI	GCTCTTC	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	497
BsrDI	GCAATG	2 cut(s)	118, 366
BsrI	ACTGG	3 cut(s)	285, 464, 537
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	3 cut(s)	169, 443, 569
Bst2UI	CCWGG	2 cut(s)	388, 508
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	311
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	399, 639
BstDEI	CTNAG	3 cut(s)	238, 372, 559
BstF5I	GGATG	6 cut(s)	197, 205, 468, 541, 577, 619
BstFNI	CGCG	1 cut(s)	231
BstH2I	RGCGCY	2 cut(s)	43, 476
BstHHI	GCGC	2 cut(s)	42, 475
BstKTI	GATC	3 cut(s)	172, 446, 572
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	3 cut(s)	169, 443, 569
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 37, 133, 472
BstNI	CCWGG	2 cut(s)	388, 508
BstSCI	CCNGG	2 cut(s)	386, 506
BstSFI	CTRYAG	1 cut(s)	322
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	3 cut(s)	49, 208, 308
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BsuRI	GGCC	3 cut(s)	236, 391, 553
BtsCI	GGATG	6 cut(s)	197, 205, 468, 541, 577, 619
BtsIMutI	CAGTG	1 cut(s)	278
BtuMI	TCGCGA	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	399, 639
CaiI	CAGNNNCTG	1 cut(s)	447
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	2 cut(s)	42, 475
Cfr13I	GGNCC	1 cut(s)	390
CviAII	CATG	3 cut(s)	145, 211, 352
DdeI	CTNAG	3 cut(s)	238, 372, 559
DpnI	GATC	3 cut(s)	171, 445, 571
DpnII	GATC	3 cut(s)	169, 443, 569
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco147I	AGGCCT	1 cut(s)	236
Eco31I	GGTCTC	1 cut(s)	497
Eco47III	AGCGCT	2 cut(s)	41, 474
Eco88I	CYCGRG	1 cut(s)	392
EcoRII	CCWGG	2 cut(s)	386, 506
FaeI	CATG	3 cut(s)	148, 214, 355
FaiI	YATR	9 cut(s)	84, 122, 146, 212, 297, 353, 408, 456, 629
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	3 cut(s)	144, 210, 351
Fnu4HI	GCNGC	6 cut(s)	29, 38, 222, 322, 635, 642
FokI	GGATG	6 cut(s)	204, 212, 475, 548, 564, 606
Fsp4HI	GCNGC	6 cut(s)	29, 38, 222, 322, 635, 642
GlaI	GCGC	2 cut(s)	41, 474
GluI	GCNGC	6 cut(s)	29, 38, 222, 322, 635, 642
GsaI	CCCAGC	1 cut(s)	627
HaeII	RGCGCY	2 cut(s)	43, 476
HaeIII	GGCC	3 cut(s)	236, 391, 553
HapII	CCGG	1 cut(s)	249
HhaI	GCGC	2 cut(s)	42, 475
Hin1II	CATG	3 cut(s)	148, 214, 355
Hin6I	GCGC	2 cut(s)	40, 473
HinP1I	GCGC	2 cut(s)	40, 473
HincII	GTYRAC	1 cut(s)	603
HindII	GTYRAC	1 cut(s)	603
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	2 cut(s)	281, 379
Hpy166II	GTNNAC	1 cut(s)	603
Hpy188I	TCNGA	4 cut(s)	443, 502, 562, 574
Hpy188III	TCNNGA	3 cut(s)	145, 164, 230
Hpy8I	GTNNAC	1 cut(s)	603
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	405
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	605
HpyCH4V	TGCA	5 cut(s)	111, 324, 331, 359, 641
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 37, 133, 472
HpyF3I	CTNAG	3 cut(s)	238, 372, 559
HpySE526I	ACGT	1 cut(s)	605
Hsp92II	CATG	3 cut(s)	148, 214, 355
HspAI	GCGC	2 cut(s)	40, 473
Kzo9I	GATC	3 cut(s)	169, 443, 569
LguI	GCTCTTC	1 cut(s)	311
LmnI	GCTCC	1 cut(s)	284
Lsp1109I	GCAGC	3 cut(s)	49, 208, 308
LweI	GCATC	1 cut(s)	453
MaeII	ACGT	1 cut(s)	605
MaeIII	GTNAC	2 cut(s)	269, 367
MalI	GATC	3 cut(s)	171, 445, 571
MboI	GATC	3 cut(s)	169, 443, 569
MboII	GAAGA	3 cut(s)	144, 328, 443
MflI	RGATCY	1 cut(s)	443
MluCI	AATT	3 cut(s)	131, 482, 564
MseI	TTAA	1 cut(s)	646
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	2 cut(s)	388, 508
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	2 cut(s)	388, 508
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	4 cut(s)	34, 37, 133, 472
NdeII	GATC	3 cut(s)	169, 443, 569
NlaIII	CATG	3 cut(s)	148, 214, 355
NmuCI	GTSAC	2 cut(s)	269, 367
NruI	TCGCGA	1 cut(s)	231
PagI	TCATGA	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	311
PctI	GAATGC	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	6 cut(s)	30, 39, 223, 323, 636, 643
Psp6I	CCWGG	2 cut(s)	386, 506
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	2 cut(s)	386, 506
PspPI	GGNCC	1 cut(s)	390
PstI	CTGCAG	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	443
RruI	TCGCGA	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	646
SatI	GCNGC	6 cut(s)	29, 38, 222, 322, 635, 642
Sau3AI	GATC	3 cut(s)	169, 443, 569
Sau96I	GGNCC	1 cut(s)	390
ScrFI	CCNGG	2 cut(s)	388, 508
SfaNI	GCATC	1 cut(s)	453
SfcI	CTRYAG	1 cut(s)	322
Sse9I	AATT	3 cut(s)	131, 482, 564
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	1 cut(s)	28
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	386, 506
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	608
TasI	AATT	3 cut(s)	131, 482, 564
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	1 cut(s)	646
Tru9I	TTAA	1 cut(s)	646
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	2 cut(s)	269, 367
TseI	GCWGC	5 cut(s)	37, 221, 321, 634, 641
Tsp45I	GTSAC	2 cut(s)	269, 367
TspDTI	ATGAA	2 cut(s)	340, 552
TspRI	CASTG	1 cut(s)	285
Van91I	CCANNNNNTGG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	2 cut(s)	189, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.