Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Reverse (-)

9804253 .. 9805781

Gene Structure 1529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G26690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTCGAATCTTTCTGCAAGAACAGGACGAGACCATCAACGTTATGACAACAACTTCCGTCTTGTTTCTGGATGCATTCCGTATAGGCTGGTGAAAGATGAAGAAGAGGACTCAACAAGTGTTGACTTTGAAAACAAGCTTCAAGTTCTTATGATTTCATCTCCTAATCGTCACGATCTTGTCTTCCCAAAGGGAGGATGGGAAGATGATGAAACTGTTCTTGAAGCTGCTTCTCGTGAAGCTATGGAAGAAGCAGGAGTTAAAGGAATACTAAGAGAAGATCCATTAGGAGTTTGGGAATTTAGAAGTAAGAGTAGCAGTGTGGAAGCTGATTGCTGCTTAGGTGGTGGATGCAAAGGTTATATGTTTGCGTTAGAGGTGAAGGAAGAACTTGCGATATGGCCTGAGCAAGATGACCGCGAGAGAAGATGGCTGAATGTAAAAGAAGCCTTGGAGCTGTGTCGGTATGAGTGGATGCAGAGCGCTCTTGAAGAGTTTCTACGAGTAATGGCAGAAGAAGGAAGCACAAAGGAAGACTCTCTTGCCATTTCCAGCATTTCAAATCGAGGAGAGCGTCAAATTGATCCTCGCTACTGCTTTGTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

202

Amino Acids

23.19

Weight (kDa)

4.66

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	44 - 163	1.7e-12	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	420
AciI	CCGC	1 cut(s)	418
AclI	AACGTT	1 cut(s)	40
AclWI	GGATC	2 cut(s)	275, 578
AcsI	RAATTY	1 cut(s)	299
AfeI	AGCGCT	1 cut(s)	484
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	5 cut(s)	131, 143, 224, 491, 561
AluBI	AGCT	5 cut(s)	139, 227, 242, 329, 457
AluI	AGCT	5 cut(s)	139, 227, 242, 329, 457
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	2 cut(s)	275, 578
Aor51HI	AGCGCT	1 cut(s)	484
AoxI	GGCC	1 cut(s)	401
ApeKI	GCWGC	2 cut(s)	227, 336
ApoI	RAATTY	1 cut(s)	299
Asp700I	GAANNNNTTC	2 cut(s)	216, 495
AspLEI	GCGC	1 cut(s)	485
AsuHPI	GGTGA	2 cut(s)	103, 391
BarI	GAAGNNNNNNTAC	2 cut(s)	483, 515
BauI	CACGAG	1 cut(s)	234
BbsI	GAAGAC	2 cut(s)	175, 540
BbvI	GCAGC	2 cut(s)	214, 323
BccI	CCATC	3 cut(s)	42, 192, 423
BcoDI	GTCTC	1 cut(s)	24
BfoI	RGCGCY	1 cut(s)	486
BisI	GCNGC	2 cut(s)	228, 337
BlsI	GCNGC	2 cut(s)	229, 338
BmsI	GCATC	3 cut(s)	62, 341, 465
BpiI	GAAGAC	2 cut(s)	175, 540
Bpu10I	CCTNAGC	2 cut(s)	340, 405
BsaI	GGTCTC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	450
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	450
BseGI	GGATG	4 cut(s)	77, 203, 356, 480
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	396
BseRI	GAGGAG	1 cut(s)	582
BseXI	GCAGC	2 cut(s)	214, 323
Bsh1236I	CGCG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	403
Bso31I	GGTCTC	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	175, 280, 583
BspACI	CCGC	1 cut(s)	418
BspANI	GGCC	1 cut(s)	403
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	1 cut(s)	420
BspPI	GGATC	2 cut(s)	275, 578
BspTNI	GGTCTC	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	450
BssMI	GATC	3 cut(s)	175, 280, 583
BssSI	CACGAG	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	450
Bst2BI	CACGAG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	2 cut(s)	99, 486
BstDEI	CTNAG	3 cut(s)	272, 340, 405
BstF5I	GGATG	4 cut(s)	77, 203, 356, 480
BstFNI	CGCG	1 cut(s)	420
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	3 cut(s)	178, 283, 586
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	3 cut(s)	175, 280, 583
BstUI	CGCG	1 cut(s)	420
BstV1I	GCAGC	2 cut(s)	214, 323
BstV2I	GAAGAC	2 cut(s)	175, 540
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	403
BtsCI	GGATG	4 cut(s)	77, 203, 356, 480
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	325
CfoI	GCGC	1 cut(s)	485
CseI	GACGC	1 cut(s)	563
CviJI	RGCY	9 cut(s)	88, 139, 227, 242, 329, 403, 433, 449, 457
CviKI_1	RGCY	9 cut(s)	88, 139, 227, 242, 329, 403, 433, 449, 457
DdeI	CTNAG	3 cut(s)	272, 340, 405
DpnI	GATC	3 cut(s)	177, 282, 585
DpnII	GATC	3 cut(s)	175, 280, 583
Eam1104I	CTCTTC	2 cut(s)	99, 486
EarI	CTCTTC	2 cut(s)	99, 486
Eco130I	CCWWGG	1 cut(s)	450
Eco31I	GGTCTC	1 cut(s)	24
Eco47III	AGCGCT	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	450
EcoT22I	ATGCAT	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	450
FaiI	YATR	8 cut(s)	45, 84, 152, 245, 363, 365, 400, 468
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
Fnu4HI	GCNGC	2 cut(s)	228, 337
FokI	GGATG	4 cut(s)	84, 210, 363, 487
Fsp4HI	GCNGC	2 cut(s)	228, 337
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	2 cut(s)	228, 337
HaeII	RGCGCY	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	403
HgaI	GACGC	1 cut(s)	563
HhaI	GCGC	1 cut(s)	485
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	3 cut(s)	7, 110, 536
HphI	GGTGA	2 cut(s)	103, 391
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188III	TCNNGA	5 cut(s)	69, 173, 221, 236, 488
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	376, 512
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	4 cut(s)	17, 75, 354, 478
HpyF3I	CTNAG	3 cut(s)	272, 340, 405
HpySE526I	ACGT	1 cut(s)	40
HspAI	GCGC	1 cut(s)	483
Kzo9I	GATC	3 cut(s)	175, 280, 583
LmnI	GCTCC	1 cut(s)	454
LpnPI	CCDG	6 cut(s)	9, 54, 74, 240, 417, 565
Lsp1109I	GCAGC	2 cut(s)	214, 323
LweI	GCATC	3 cut(s)	62, 341, 465
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	3 cut(s)	177, 282, 585
MboI	GATC	3 cut(s)	175, 280, 583
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	2 cut(s)	299, 579
MlyI	GAGTC	2 cut(s)	104, 530
MnlI	CCTC	5 cut(s)	100, 188, 370, 560, 597
Mph1103I	ATGCAT	1 cut(s)	77
MroXI	GAANNNNTTC	2 cut(s)	216, 495
MseI	TTAA	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	75
MvnI	CGCG	1 cut(s)	420
NdeII	GATC	3 cut(s)	175, 280, 583
NmuCI	GTSAC	1 cut(s)	170
NsiI	ATGCAT	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	571
PctI	GAATGC	1 cut(s)	75
PdmI	GAANNNNTTC	2 cut(s)	216, 495
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	229, 338
PleI	GAGTC	2 cut(s)	104, 530
PpsI	GAGTC	2 cut(s)	104, 530
Psp1406I	AACGTT	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	2 cut(s)	228, 337
Sau3AI	GATC	3 cut(s)	175, 280, 583
SchI	GAGTC	2 cut(s)	104, 530
SetI	ASST	9 cut(s)	43, 141, 229, 244, 331, 346, 361, 381, 459
SfaNI	GCATC	3 cut(s)	62, 341, 465
Sse9I	AATT	2 cut(s)	299, 579
SsiI	CCGC	1 cut(s)	418
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	2 cut(s)	5, 565
TasI	AATT	2 cut(s)	299, 579
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	2 cut(s)	227, 336
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	3 cut(s)	114, 147, 225
TspGWI	ACGGA	2 cut(s)	47, 69
TspRI	CASTG	1 cut(s)	325
XapI	RAATTY	1 cut(s)	299
XcmI	CCANNNNNNNNNTGG	2 cut(s)	195, 291
XmnI	GAANNNNTTC	2 cut(s)	216, 495
Zsp2I	ATGCAT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.