Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Reverse (-)

166838 .. 170344

Gene Structure 3507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00076250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTCATCTGTTCTCGCACGAACAGGGCGACATCGCCAACGTTATGAGAATAATTTTCGCCTTGTTTCTGGATGTATCCCTTACCGGATAACAGAAGACATCAATGATGAGGATCATAGCAGCAATACTCATATCGAAAAAAAGATACAAGTTCTCATGGTTTCTTCACCTGACCGCGACGACCGAGTGTTCCCAAAAGGTGGATGGGAGGATGATGAGACTGTTTTAGAAGCTGCTTGTCGGGAAGCCTTCGAGGAAGCAGGGGTGAAAGGAACACTAGGAGAAACTCCTCTGGGAGTTTGGGAGTTCAGAAGCAAAAGTAGGCAGAACATGTGCAGTCTGGAAGGAGGCTGCAGAGGCCACATGTTTGCATTAGAGGTAACTGAAGAGCTTGACTCCTGGCCAGAGCAGCAAAACCGTGATAGAGAATGGCTAAACATAAAGGAGGCATTTAGAGTGTGCCGGTATGAATGGATGCGTAGGGCACTGGAGCAGTTTCTGAGAGTTATGGCGTCAGATAAGGATGATGATGATGATGGTACTGTGGGAAAAGCAGCTGTAGTACCAGCTGATGAAGTAGTAGTGGATGATCAGATCATGAATCAGATGACAGAATTATCAGGAGAGTACGATGATCATGAGAATACATTAGAGGACTTAATTGAGCCCGAACCTTGTGGTCCTCGTCCGGCCATGATCTCCATGCCAATGCCATTGCCGTCGCCGGTGTTATCGTTGCCATTGTCATCCAGCAACGTCAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

255

Amino Acids

29.04

Weight (kDa)

4.61

Isoelectric Point (pI)

51.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	50 - 164	7.1e-11	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	200
AccII	CGCG	1 cut(s)	177
AciI	CCGC	1 cut(s)	175
AclI	AACGTT	1 cut(s)	40
AclWI	GGATC	1 cut(s)	120
AcoI	YGGCCR	2 cut(s)	401, 690
AcuI	CTGAAG	1 cut(s)	405
AcyI	GRCGYC	1 cut(s)	512
AfaI	GTAC	3 cut(s)	541, 564, 629
AfiI	CCNNNNNNNGG	1 cut(s)	200
AflIII	ACRYGT	2 cut(s)	330, 363
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	4 cut(s)	233, 391, 557, 569
AluI	AGCT	4 cut(s)	233, 391, 557, 569
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	120
AlwNI	CAGNNNCTG	1 cut(s)	499
AoxI	GGCC	3 cut(s)	358, 401, 690
ApeKI	GCWGC	5 cut(s)	120, 233, 351, 409, 554
AspS9I	GGNCC	1 cut(s)	680
AsuHPI	GGTGA	2 cut(s)	159, 277
AvaII	GGWCC	1 cut(s)	680
BaeGI	GKGCMC	1 cut(s)	487
BalI	TGGCCA	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	669
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	5 cut(s)	132, 220, 338, 421, 566
BccI	CCATC	2 cut(s)	198, 530
BceAI	ACGGC	1 cut(s)	703
BciT130I	CCWGG	1 cut(s)	400
BciVI	GTATCC	1 cut(s)	86
BclI	TGATCA	2 cut(s)	589, 634
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	2 cut(s)	352, 558
BfuI	GTATCC	1 cut(s)	86
BisI	GCNGC	5 cut(s)	121, 234, 352, 410, 555
BlsI	GCNGC	5 cut(s)	122, 235, 353, 411, 556
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	1 cut(s)	680
BmgT120I	GGNCC	1 cut(s)	680
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
BpmI	CTGGAG	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	512
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse118I	RCCGGY	2 cut(s)	462, 724
Bse1I	ACTGG	1 cut(s)	492
Bse3DI	GCAATG	1 cut(s)	713
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	400
BseGI	GGATG	7 cut(s)	77, 209, 217, 480, 529, 592, 746
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	713
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	1 cut(s)	492
BseRI	GAGGAG	1 cut(s)	279
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	5 cut(s)	132, 220, 338, 421, 566
BsgI	GTGCAG	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	3 cut(s)	360, 403, 692
BsiEI	CGRYCG	1 cut(s)	184
BsiSI	CCGG	4 cut(s)	85, 463, 689, 725
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	360, 403, 692
Bsp1286I	GDGCHC	2 cut(s)	487, 669
Bsp143I	GATC	6 cut(s)	112, 589, 594, 634, 696, 761
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	3 cut(s)	360, 403, 692
BspCNI	CTCAG	1 cut(s)	492
BspFNI	CGCG	1 cut(s)	177
BspHI	TCATGA	3 cut(s)	597, 637, 764
BspMAI	CTGCAG	1 cut(s)	356
BspPI	GGATC	1 cut(s)	120
BspQI	GCTCTTC	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	713
BsrFI	RCCGGY	2 cut(s)	462, 724
BsrI	ACTGG	1 cut(s)	492
BssAI	RCCGGY	2 cut(s)	462, 724
BssMI	GATC	6 cut(s)	112, 589, 594, 634, 696, 761
BssNI	GRCGYC	1 cut(s)	512
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	3 cut(s)	223, 419, 544
Bst6I	CTCTTC	1 cut(s)	381
BstACI	GRCGYC	1 cut(s)	512
BstDEI	CTNAG	1 cut(s)	500
BstF5I	GGATG	7 cut(s)	77, 209, 217, 480, 529, 592, 746
BstFNI	CGCG	1 cut(s)	177
BstKTI	GATC	6 cut(s)	115, 592, 597, 637, 699, 764
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	6 cut(s)	112, 589, 594, 634, 696, 761
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	2 cut(s)	357, 409
BstNI	CCWGG	1 cut(s)	400
BstNSI	RCATGY	2 cut(s)	334, 367
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	2 cut(s)	352, 558
BstSLI	GKGCMC	1 cut(s)	487
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	5 cut(s)	132, 220, 338, 421, 566
BstV2I	GAAGAC	1 cut(s)	102
BsuI	GTATCC	1 cut(s)	86
BsuRI	GGCC	3 cut(s)	360, 403, 692
BtgZI	GCGATG	1 cut(s)	17
BtsCI	GGATG	7 cut(s)	77, 209, 217, 480, 529, 592, 746
BtsIMutI	CAGTG	1 cut(s)	485
CaiI	CAGNNNCTG	1 cut(s)	499
CciI	TCATGA	3 cut(s)	597, 637, 764
Cfr10I	RCCGGY	2 cut(s)	462, 724
Cfr13I	GGNCC	1 cut(s)	680
CseI	GACGC	1 cut(s)	501
Csp6I	GTAC	3 cut(s)	540, 563, 628
CviAII	CATG	8 cut(s)	157, 331, 364, 598, 638, 694, 703, 765
CviQI	GTAC	3 cut(s)	540, 563, 628
DdeI	CTNAG	1 cut(s)	500
DpnI	GATC	6 cut(s)	114, 591, 596, 636, 698, 763
DpnII	GATC	6 cut(s)	112, 589, 594, 634, 696, 761
EaeI	YGGCCR	2 cut(s)	401, 690
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	669
Eco47I	GGWCC	1 cut(s)	680
Eco57I	CTGAAG	1 cut(s)	405
EcoRII	CCWGG	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	669
FaeI	CATG	8 cut(s)	160, 334, 367, 601, 641, 697, 706, 768
FatI	CATG	8 cut(s)	156, 330, 363, 597, 637, 693, 702, 764
FbaI	TGATCA	2 cut(s)	589, 634
Fnu4HI	GCNGC	5 cut(s)	121, 234, 352, 410, 555
FokI	GGATG	7 cut(s)	84, 216, 224, 487, 536, 599, 733
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	5 cut(s)	121, 234, 352, 410, 555
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	5 cut(s)	121, 234, 352, 410, 555
GsuI	CTGGAG	1 cut(s)	509
HaeIII	GGCC	3 cut(s)	360, 403, 692
HapII	CCGG	4 cut(s)	85, 463, 689, 725
HgaI	GACGC	1 cut(s)	501
Hin1I	GRCGYC	1 cut(s)	512
Hin1II	CATG	8 cut(s)	160, 334, 367, 601, 641, 697, 706, 768
HinfI	GANTC	2 cut(s)	395, 601
HpaII	CCGG	4 cut(s)	85, 463, 689, 725
HphI	GGTGA	2 cut(s)	159, 277
Hpy188I	TCNGA	6 cut(s)	311, 501, 517, 594, 606, 761
Hpy188III	TCNNGA	7 cut(s)	69, 242, 341, 598, 621, 638, 765
Hpy99I	CGWCG	2 cut(s)	182, 724
HpyAV	CCTTC	2 cut(s)	259, 338
HpyCH4III	ACNGT	3 cut(s)	223, 419, 544
HpyCH4IV	ACGT	2 cut(s)	40, 756
HpyCH4V	TGCA	3 cut(s)	336, 354, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	357, 409
HpyF3I	CTNAG	1 cut(s)	500
HpySE526I	ACGT	2 cut(s)	40, 756
Hsp92I	GRCGYC	1 cut(s)	512
Hsp92II	CATG	8 cut(s)	160, 334, 367, 601, 641, 697, 706, 768
Ksp22I	TGATCA	2 cut(s)	589, 634
Kzo9I	GATC	6 cut(s)	112, 589, 594, 634, 696, 761
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	1 cut(s)	490
Lsp1109I	GCAGC	5 cut(s)	132, 220, 338, 421, 566
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	2 cut(s)	40, 756
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	6 cut(s)	114, 591, 596, 636, 698, 763
MboI	GATC	6 cut(s)	112, 589, 594, 634, 696, 761
MboII	GAAGA	3 cut(s)	107, 156, 398
MhlI	GDGCHC	2 cut(s)	487, 669
MlsI	TGGCCA	1 cut(s)	403
MluCI	AATT	3 cut(s)	52, 614, 660
MluNI	TGGCCA	1 cut(s)	403
MlyI	GAGTC	1 cut(s)	389
Mox20I	TGGCCA	1 cut(s)	403
MscI	TGGCCA	1 cut(s)	403
MseI	TTAA	1 cut(s)	659
MslI	CAYNNNNRTG	1 cut(s)	707
Msp20I	TGGCCA	1 cut(s)	403
MspA1I	CMGCKG	2 cut(s)	557, 569
MspI	CCGG	4 cut(s)	85, 463, 689, 725
MspR9I	CCNGG	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	400
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	357, 409
NdeII	GATC	6 cut(s)	112, 589, 594, 634, 696, 761
NlaIII	CATG	8 cut(s)	160, 334, 367, 601, 641, 697, 706, 768
NspI	RCATGY	2 cut(s)	334, 367
PagI	TCATGA	3 cut(s)	597, 637, 764
PciI	ACATGT	2 cut(s)	330, 363
PciSI	GCTCTTC	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	601
PflMI	CCANNNNNTGG	1 cut(s)	200
PkrI	GCNGC	5 cut(s)	122, 235, 353, 411, 556
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
PscI	ACATGT	2 cut(s)	330, 363
Psp1406I	AACGTT	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	680
PstI	CTGCAG	1 cut(s)	356
PstNI	CAGNNNCTG	1 cut(s)	499
PvuII	CAGCTG	2 cut(s)	557, 569
RsaI	GTAC	3 cut(s)	541, 564, 629
RsaNI	GTAC	3 cut(s)	540, 563, 628
RseI	CAYNNNNRTG	1 cut(s)	707
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	659
SatI	GCNGC	5 cut(s)	121, 234, 352, 410, 555
Sau3AI	GATC	6 cut(s)	112, 589, 594, 634, 696, 761
Sau96I	GGNCC	1 cut(s)	680
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	2 cut(s)	487, 669
SfaNI	GCATC	1 cut(s)	465
SfcI	CTRYAG	2 cut(s)	352, 558
SgrAI	CRCCGGYG	1 cut(s)	724
SinI	GGWCC	1 cut(s)	680
SmiMI	CAYNNNNRTG	1 cut(s)	707
Sse9I	AATT	3 cut(s)	52, 614, 660
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	398
TaaI	ACNGT	3 cut(s)	223, 419, 544
TaiI	ACGT	2 cut(s)	43, 759
TaqI	TCGA	2 cut(s)	135, 252
TaqII	GACCGA	1 cut(s)	198
TasI	AATT	3 cut(s)	52, 614, 660
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TscAI	CASTG	1 cut(s)	492
TseI	GCWGC	5 cut(s)	120, 233, 351, 409, 554
TspDTI	ATGAA	3 cut(s)	483, 588, 614
TspRI	CASTG	1 cut(s)	492
Van91I	CCANNNNNTGG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	680
XceI	RCATGY	2 cut(s)	334, 367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	201
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.