Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00723

Orthogroup ID

OG0001565

Physical Location & Seq

Genomic Coordinates Forward (+)

5693 .. 8211

Gene Structure 2519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G015650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCCGTTGCTTTGTTTTCTTTCTCGTTTGTTTAATGACTGCTTTTGTAGCCTAGAAAAAAGGTCGATCATCAATCCGATCATGTCATCTGTTCTAGCACGAACAGGGCGACATCGCCAACGTTATGAGAACAATTTTCGCCTTGTTTCTGGATGTATCCCTTACCGGATAACAGAAGACATCAATGATGAGGATCATAGCAGCAGCAGCAATACCCATATTGAAAACAAGATACAAGTTCTCATGGTTTCTTCACCTGACCGCGACGACCGAGTGTTCCCTAAAGGTGGATGGGAGGATGATGAGACTGTTTTAGAAGCTGCTTGTCGGGAAGCTTTCGAGGAATCAGGGGTGAAAGGAACACTAAGAGAAACTCCTCTGGGAGTTTGGGAGTTCAGAAGCAAAAGTAGGCAGAACATGTGCAGCCTGGAAGGAGGCTGCAGAGGCTACATGTTTGCATTAGAGGTAACTGAAGAGCTTGACACCTGGCCAGAGCAGCAAAACCGTGATAGAGAATGGCTAAACATAAAGGAGGCATTTAGAGTGTGCCGGTATGAATGGATGCGTAGGGCACTGGAGCAGTTTCTGAGAGTTATGGCGTCAGATAAGGATGATGATGATGATGATGGTACTGTGGTAAAAGCAGCTGTAGTACCAGCTGATGAAGTCGATCAGATCATGAATCAGATGACAGAATTATCAGGAGAGTACGATGATCATGAGAATACATTAGATGAGGACTTAATTGAGCCCGAACCTTGTGGTCCTCGTCCAGCCATGATCTCCATGCCAATGCCATTGCCGTCGCCGGTGTTATCGTTGCCATTGTCATCCAGCAACGTCAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

283

Amino Acids

32.47

Weight (kDa)

4.61

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	79 - 193	6.3e-11	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12880 AT3G26690 AT3G26690
fragaria_vesca	FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_4g22330 FvH4_6g54400
malus_domestica	MD09G1001600.v1.1 MD13G1132800.v1.1 MD16G1143100.v1.1 MD17G1005200.v1.1
prunus_persica	Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.1G212800_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1 Prupe.3G314600_v2.0.a1
pyrus_communis	pycom111g00130 pycom13g11530 pycom16g11320 pycom17g00140
rosa_chinensis	RchiOBHm_Chr2g0176631 RchiOBHm_Chr4g0428561
rosa_laevigata	RLG00000007142 RLG00000022431
rosa_multiflora	Rmu_sc0001417.1_g000015 Rmu_sc0002072.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076250 Rroxscaffold_5G00370270
rosa_rugosa	Rorug02G0597000 Rorug02G0597100 Rorug02G0597200 Rorug02G0597300 Rorug04G0226300 Rorug04G0226400
rosa_samantha	Rh2AG674600 Rh2BG685700 Rh2CG649000 Rh2DG699900 Rh4AG283900 Rh4BG289600 Rh4CG305500 Rh4DG286600
rosa_wichuraiana	Rw0G015650 Rw2G055360 Rw4G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	264
AciI	CCGC	1 cut(s)	262
AclI	AACGTT	1 cut(s)	121
AclWI	GGATC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	599
AfaI	GTAC	3 cut(s)	631, 654, 710
AfiI	CCNNNNNNNGG	1 cut(s)	287
AflIII	ACRYGT	2 cut(s)	417, 450
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	2 cut(s)	426, 485
AluBI	AGCT	5 cut(s)	320, 335, 478, 647, 659
AluI	AGCT	5 cut(s)	320, 335, 478, 647, 659
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	201
AlwNI	CAGNNNCTG	1 cut(s)	586
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	8 cut(s)	201, 204, 207, 320, 423, 438, 496, 644
AspS9I	GGNCC	1 cut(s)	764
AsuHPI	GGTGA	2 cut(s)	246, 364
AvaII	GGWCC	1 cut(s)	764
BaeGI	GKGCMC	1 cut(s)	574
BaeI	ACNNNNGTAYC	2 cut(s)	621, 654
BalI	TGGCCA	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	753
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	8 cut(s)	213, 216, 219, 307, 425, 435, 508, 656
BccI	CCATC	2 cut(s)	285, 620
BceAI	ACGGC	1 cut(s)	787
BciT130I	CCWGG	2 cut(s)	428, 487
BciVI	GTATCC	1 cut(s)	167
BclI	TGATCA	1 cut(s)	715
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	2 cut(s)	53, 95
BfmI	CTRYAG	2 cut(s)	439, 648
BfuI	GTATCC	1 cut(s)	167
BisI	GCNGC	8 cut(s)	202, 205, 208, 321, 424, 439, 497, 645
BlsI	GCNGC	8 cut(s)	203, 206, 209, 322, 425, 440, 498, 646
Bme1390I	CCNGG	2 cut(s)	428, 487
Bme18I	GGWCC	1 cut(s)	764
BmgT120I	GGNCC	1 cut(s)	764
BmrFI	CCNGG	2 cut(s)	428, 487
BmsI	GCATC	1 cut(s)	552
BpiI	GAAGAC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	596
BsaBI	GATNNNNATC	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	599
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	2 cut(s)	549, 808
Bse1I	ACTGG	1 cut(s)	579
Bse3DI	GCAATG	1 cut(s)	797
Bse8I	GATNNNNATC	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	428, 487
BseGI	GGATG	6 cut(s)	158, 296, 304, 567, 616, 830
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMI	GCAATG	1 cut(s)	797
BseMII	CTCAG	1 cut(s)	578
BseNI	ACTGG	1 cut(s)	579
BseRI	GAGGAG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	8 cut(s)	213, 216, 219, 307, 425, 435, 508, 656
BsgI	GTGCAG	1 cut(s)	442
Bsh1236I	CGCG	1 cut(s)	264
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	1 cut(s)	490
BsiEI	CGRYCG	1 cut(s)	271
BsiSI	CCGG	3 cut(s)	166, 550, 809
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	490
Bsp1286I	GDGCHC	2 cut(s)	574, 753
Bsp143I	GATC	8 cut(s)	66, 78, 193, 670, 675, 715, 780, 845
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	1 cut(s)	579
BspFNI	CGCG	1 cut(s)	264
BspHI	TCATGA	3 cut(s)	678, 718, 848
BspMAI	CTGCAG	1 cut(s)	443
BspPI	GGATC	1 cut(s)	201
BspQI	GCTCTTC	1 cut(s)	468
BsrDI	GCAATG	1 cut(s)	797
BsrFI	RCCGGY	2 cut(s)	549, 808
BsrI	ACTGG	1 cut(s)	579
BssAI	RCCGGY	2 cut(s)	549, 808
BssMI	GATC	8 cut(s)	66, 78, 193, 670, 675, 715, 780, 845
BssNI	GRCGYC	1 cut(s)	599
Bst2UI	CCWGG	2 cut(s)	428, 487
Bst4CI	ACNGT	3 cut(s)	310, 506, 634
Bst6I	CTCTTC	1 cut(s)	468
BstACI	GRCGYC	1 cut(s)	599
BstDEI	CTNAG	2 cut(s)	365, 587
BstF5I	GGATG	6 cut(s)	158, 296, 304, 567, 616, 830
BstFNI	CGCG	1 cut(s)	264
BstKTI	GATC	8 cut(s)	69, 81, 196, 673, 678, 718, 783, 848
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	8 cut(s)	66, 78, 193, 670, 675, 715, 780, 845
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 207, 444, 496
BstNI	CCWGG	2 cut(s)	428, 487
BstNSI	RCATGY	2 cut(s)	421, 454
BstSCI	CCNGG	2 cut(s)	426, 485
BstSFI	CTRYAG	2 cut(s)	439, 648
BstSLI	GKGCMC	1 cut(s)	574
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	8 cut(s)	213, 216, 219, 307, 425, 435, 508, 656
BstV2I	GAAGAC	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	490
BtgZI	GCGATG	1 cut(s)	98
BtsCI	GGATG	6 cut(s)	158, 296, 304, 567, 616, 830
BtsIMutI	CAGTG	1 cut(s)	572
CaiI	CAGNNNCTG	1 cut(s)	586
CciI	TCATGA	3 cut(s)	678, 718, 848
Cfr10I	RCCGGY	2 cut(s)	549, 808
Cfr13I	GGNCC	1 cut(s)	764
CseI	GACGC	1 cut(s)	588
Csp6I	GTAC	3 cut(s)	630, 653, 709
CviAII	CATG	9 cut(s)	82, 244, 418, 451, 679, 719, 778, 787, 849
CviQI	GTAC	3 cut(s)	630, 653, 709
DdeI	CTNAG	2 cut(s)	365, 587
DpnI	GATC	8 cut(s)	68, 80, 195, 672, 677, 717, 782, 847
DpnII	GATC	8 cut(s)	66, 78, 193, 670, 675, 715, 780, 845
EaeI	YGGCCR	1 cut(s)	488
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco24I	GRGCYC	1 cut(s)	753
Eco47I	GGWCC	1 cut(s)	764
Eco57I	CTGAAG	1 cut(s)	492
EcoRII	CCWGG	2 cut(s)	426, 485
EcoT38I	GRGCYC	1 cut(s)	753
FaeI	CATG	9 cut(s)	85, 247, 421, 454, 682, 722, 781, 790, 852
FatI	CATG	9 cut(s)	81, 243, 417, 450, 678, 718, 777, 786, 848
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	8 cut(s)	202, 205, 208, 321, 424, 439, 497, 645
FokI	GGATG	6 cut(s)	165, 303, 311, 574, 623, 817
FriOI	GRGCYC	1 cut(s)	753
Fsp4HI	GCNGC	8 cut(s)	202, 205, 208, 321, 424, 439, 497, 645
FspBI	CTAG	2 cut(s)	53, 95
GluI	GCNGC	8 cut(s)	202, 205, 208, 321, 424, 439, 497, 645
GsuI	CTGGAG	1 cut(s)	596
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	3 cut(s)	166, 550, 809
HgaI	GACGC	1 cut(s)	588
Hin1I	GRCGYC	1 cut(s)	599
Hin1II	CATG	9 cut(s)	85, 247, 421, 454, 682, 722, 781, 790, 852
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	2 cut(s)	344, 682
HpaII	CCGG	3 cut(s)	166, 550, 809
HphI	GGTGA	2 cut(s)	246, 364
Hpy188I	TCNGA	7 cut(s)	78, 398, 588, 604, 675, 687, 845
Hpy188III	TCNNGA	6 cut(s)	150, 329, 679, 702, 719, 849
Hpy99I	CGWCG	2 cut(s)	269, 808
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	3 cut(s)	310, 506, 634
HpyCH4IV	ACGT	2 cut(s)	121, 840
HpyCH4V	TGCA	3 cut(s)	423, 441, 458
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 207, 444, 496
HpyF3I	CTNAG	2 cut(s)	365, 587
HpySE526I	ACGT	2 cut(s)	121, 840
Hsp92I	GRCGYC	1 cut(s)	599
Hsp92II	CATG	9 cut(s)	85, 247, 421, 454, 682, 722, 781, 790, 852
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	8 cut(s)	66, 78, 193, 670, 675, 715, 780, 845
LguI	GCTCTTC	1 cut(s)	468
LmnI	GCTCC	1 cut(s)	577
Lsp1109I	GCAGC	8 cut(s)	213, 216, 219, 307, 425, 435, 508, 656
LweI	GCATC	1 cut(s)	552
MaeI	CTAG	2 cut(s)	53, 95
MaeII	ACGT	2 cut(s)	121, 840
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	8 cut(s)	68, 80, 195, 672, 677, 717, 782, 847
MboI	GATC	8 cut(s)	66, 78, 193, 670, 675, 715, 780, 845
MboII	GAAGA	3 cut(s)	188, 243, 485
MhlI	GDGCHC	2 cut(s)	574, 753
MlsI	TGGCCA	1 cut(s)	490
MluCI	AATT	3 cut(s)	133, 695, 744
MluNI	TGGCCA	1 cut(s)	490
Mox20I	TGGCCA	1 cut(s)	490
MscI	TGGCCA	1 cut(s)	490
MseI	TTAA	2 cut(s)	33, 743
MslI	CAYNNNNRTG	1 cut(s)	791
Msp20I	TGGCCA	1 cut(s)	490
MspA1I	CMGCKG	2 cut(s)	647, 659
MspI	CCGG	3 cut(s)	166, 550, 809
MspR9I	CCNGG	2 cut(s)	428, 487
MvaI	CCWGG	2 cut(s)	428, 487
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	4 cut(s)	48, 207, 444, 496
NdeII	GATC	8 cut(s)	66, 78, 193, 670, 675, 715, 780, 845
NlaIII	CATG	9 cut(s)	85, 247, 421, 454, 682, 722, 781, 790, 852
NspI	RCATGY	2 cut(s)	421, 454
PagI	TCATGA	3 cut(s)	678, 718, 848
PciI	ACATGT	2 cut(s)	417, 450
PciSI	GCTCTTC	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	344, 682
PkrI	GCNGC	8 cut(s)	203, 206, 209, 322, 425, 440, 498, 646
PscI	ACATGT	2 cut(s)	417, 450
Psp1406I	AACGTT	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	426, 485
PspGI	CCWGG	2 cut(s)	426, 485
PspPI	GGNCC	1 cut(s)	764
PstI	CTGCAG	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	586
PvuII	CAGCTG	2 cut(s)	647, 659
RsaI	GTAC	3 cut(s)	631, 654, 710
RsaNI	GTAC	3 cut(s)	630, 653, 709
RseI	CAYNNNNRTG	1 cut(s)	791
SapI	GCTCTTC	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	33, 743
SatI	GCNGC	8 cut(s)	202, 205, 208, 321, 424, 439, 497, 645
Sau3AI	GATC	8 cut(s)	66, 78, 193, 670, 675, 715, 780, 845
Sau96I	GGNCC	1 cut(s)	764
ScrFI	CCNGG	2 cut(s)	428, 487
SduI	GDGCHC	2 cut(s)	574, 753
SfaNI	GCATC	1 cut(s)	552
SfcI	CTRYAG	2 cut(s)	439, 648
SgrAI	CRCCGGYG	1 cut(s)	808
SinI	GGWCC	1 cut(s)	764
SmiMI	CAYNNNNRTG	1 cut(s)	791
Sse9I	AATT	3 cut(s)	133, 695, 744
SsiI	CCGC	1 cut(s)	262
SspMI	CTAG	2 cut(s)	53, 95
StyD4I	CCNGG	2 cut(s)	426, 485
TaaI	ACNGT	3 cut(s)	310, 506, 634
TaiI	ACGT	2 cut(s)	124, 843
TaqI	TCGA	3 cut(s)	65, 339, 669
TaqII	GACCGA	1 cut(s)	285
TasI	AATT	3 cut(s)	133, 695, 744
TfiI	GAWTC	2 cut(s)	344, 682
Tru1I	TTAA	2 cut(s)	33, 743
Tru9I	TTAA	2 cut(s)	33, 743
TscAI	CASTG	1 cut(s)	579
TseI	GCWGC	8 cut(s)	201, 204, 207, 320, 423, 438, 496, 644
TspDTI	ATGAA	3 cut(s)	570, 678, 695
TspRI	CASTG	1 cut(s)	579
VpaK11BI	GGWCC	1 cut(s)	764
XceI	RCATGY	2 cut(s)	421, 454
XspI	CTAG	2 cut(s)	53, 95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.