AT1G13470

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002710
Physical Location & Seq
Reverse (-)
4620101 .. 4621585
1485 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13470.1

Sequence Viewer

Length: 1140 bp
ATGTATGTTACGAGGCGTTTGTCGGAATACCAAAGAAACAGATCGGAGTTGCCGGAAAGTCCAAACTCCGGCGTACTTATAATTCAAGATGAAGAGTCAAGGCCAACTTGTTGCTTCGGATCTTGCTACCGGGCTACACTCAAAGGCTTACCTTTCCCACAGAACGCGAACCTGATTGTATCTGAAAGCCGCATATTTCTTAACCAGACGATTACTTATATAGATCCTGTCGTTTTCATTCCTGTTCTTGATCAACCCTTATCTTCAAACCGTTACTATGTCATTAAACGAGGCGGGAAACACTCAGGAAAAGCTTCGGCTAATGCGAAAGAGGAAGACAGAGTCCCCTGCTGTTTTTGTTTCAGCTATGTTCCTGAAGCTAAGCCACAAGAAGCAGATCCTAATGACATATATCAGCAATTCCAGATCCATCAAAAACGATCATCATCTCGCTATTACACTGCCACTTCTGTTGCTCCTAACGGGAAACCACCAGAGTTTCTTAAGAGAAAGTATTGGAACGCTGAGTACTCGACATCTGAGGACTTTGGTCTAAAAGATGATGCAAAAGGTATTTACACTGAGATTCGTTCTGAGCTTCCTAGTGATTTTAATACAAGCGTTGTGGTAGGAAAATGGTATGTCCCTTTCATATTTGTGAAGGAAGGAAATGCAAAGGATCAGCTTAAGAGCTCAGCTTATTACAGCATGATTCTTCTACAAAGATGGGAGGAGGTTTACTCTTGTGAAAACGCTTACAACGAAAACCGCGAGGTTGTAGTTGATGTTGAAGTGGAACCAGAAGTTGTGAAGCTTGAGGGACAAGAAATTGGGAAAAATACAAAAAGGGTGGATGAAAATGGGGTTTTTTGGTTTGCGGTTGCAGAGAAGAGGATAGGTTTGAGATCTGTGGTCATGGAGAGGATGAAATGGGAAGAGGAGAGATTCGGGTGGAAGATTGAACCGCAAAGAGCAGTGGTTAAGAAATCTGAGAGATTTAATGGAGGCGGTTCGAATTGGAAGAGTTATAGATGTTATGTGTTGGTGGAGAGCTTTGAATTGAGGAGAAAGGATAAGAGTTTAGTGTTGACATTTGAGTTTAAGCATGTTGATAAGTTGAGAACCAAGTGGGAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

379

Amino Acids

44.09

Weight (kDa)

8.44

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 19 - 119 5.4e-40 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
AccII CGCG 2 cut(s) 167, 771
AciI CCGC 6 cut(s) 190, 294, 769, 878, 965, 1008
AclWI GGATC 5 cut(s) 127, 218, 392, 421, 687
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 2 cut(s) 75, 530
AfiI CCNNNNNNNGG 1 cut(s) 68
AflII CTTAAG 2 cut(s) 503, 686
AgsI TTSAA 5 cut(s) 86, 267, 791, 962, 1058
AluBI AGCT 9 cut(s) 314, 366, 380, 598, 685, 693, 698, 814, 1053
AluI AGCT 9 cut(s) 314, 366, 380, 598, 685, 693, 698, 814, 1053
Alw21I GWGCWC 1 cut(s) 695
AlwI GGATC 5 cut(s) 127, 218, 392, 421, 687
AoxI GGCC 1 cut(s) 101
Asp700I GAANNNNTTC 1 cut(s) 313
AsuC2I CCSGG 1 cut(s) 131
AsuII TTCGAA 1 cut(s) 1013
BanII GRGCYC 1 cut(s) 695
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 695
BccI CCATC 2 cut(s) 438, 720
BclI TGATCA 1 cut(s) 250
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 1 cut(s) 603
BfrI CTTAAG 2 cut(s) 503, 686
BglII AGATCT 1 cut(s) 905
BisI GCNGC 1 cut(s) 190
BlpI GCTNAGC 2 cut(s) 381, 694
BlsI GCNGC 1 cut(s) 191
BmcAI AGTACT 1 cut(s) 530
Bme1390I CCNGG 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 798
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 553
BoxI GACNNNNGTC 1 cut(s) 549
BpiI GAAGAC 1 cut(s) 342
BplI GAGNNNNNCTC 2 cut(s) 725, 757
Bpu1102I GCTNAGC 2 cut(s) 381, 694
Bpu14I TTCGAA 1 cut(s) 1013
BpuEI CTTGAG 1 cut(s) 836
BpuMI CCSGG 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 445
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse8I GATNNNNATC 1 cut(s) 445
BseGI GGATG 2 cut(s) 859, 930
BseJI GATNNNNATC 1 cut(s) 445
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 7 cut(s) 318, 516, 531, 573, 585, 708, 981
BseRI GAGGAG 3 cut(s) 746, 953, 1078
Bsh1236I CGCG 2 cut(s) 167, 771
BshFI GGCC 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 695
BsiSI CCGG 3 cut(s) 53, 69, 130
BslFI GGGAC 3 cut(s) 329, 629, 834
BslI CCNNNNNNNGG 1 cut(s) 68
BsmFI GGGAC 3 cut(s) 329, 629, 834
BsnI GGCC 1 cut(s) 103
Bsp119I TTCGAA 1 cut(s) 1013
Bsp1286I GDGCHC 1 cut(s) 695
Bsp143I GATC 9 cut(s) 41, 119, 223, 250, 397, 426, 440, 679, 905
Bsp1720I GCTNAGC 2 cut(s) 381, 694
BspACI CCGC 6 cut(s) 190, 294, 769, 878, 965, 1008
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 7 cut(s) 317, 517, 532, 574, 586, 707, 982
BspFNI CGCG 2 cut(s) 167, 771
BspHI TCATGA 1 cut(s) 1136
BspLI GGNNCC 1 cut(s) 798
BspPI GGATC 5 cut(s) 127, 218, 392, 421, 687
BspT104I TTCGAA 1 cut(s) 1013
BspTI CTTAAG 2 cut(s) 503, 686
BssMI GATC 9 cut(s) 41, 119, 223, 250, 397, 426, 440, 679, 905
Bst4CI ACNGT 1 cut(s) 272
Bst6I CTCTTC 4 cut(s) 87, 884, 930, 1016
BstAFI CTTAAG 2 cut(s) 503, 686
BstBI TTCGAA 1 cut(s) 1013
BstDEI CTNAG 8 cut(s) 304, 381, 525, 540, 582, 594, 694, 990
BstF5I GGATG 2 cut(s) 859, 930
BstFNI CGCG 2 cut(s) 167, 771
BstKTI GATC 9 cut(s) 44, 122, 226, 253, 400, 429, 443, 682, 908
BstMBI GATC 9 cut(s) 41, 119, 223, 250, 397, 426, 440, 679, 905
BstNSI RCATGY 1 cut(s) 1109
BstPAI GACNNNNGTC 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 129
BstUI CGCG 2 cut(s) 167, 771
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 5 cut(s) 119, 223, 397, 426, 905
BstYI RGATCY 5 cut(s) 119, 223, 397, 426, 905
BsuRI GGCC 1 cut(s) 103
BtsCI GGATG 2 cut(s) 859, 930
BtsI GCAGTG 2 cut(s) 459, 981
BtsIMutI CAGTG 3 cut(s) 459, 579, 981
CciI TCATGA 1 cut(s) 1136
Csp6I GTAC 2 cut(s) 74, 529
CspCI CAANNNNNGTGG 6 cut(s) 454, 489, 606, 641, 831, 866
CviAII CATG 4 cut(s) 709, 916, 1106, 1137
CviQI GTAC 2 cut(s) 74, 529
DdeI CTNAG 8 cut(s) 304, 381, 525, 540, 582, 594, 694, 990
DpnI GATC 9 cut(s) 43, 121, 225, 252, 399, 428, 442, 681, 907
DpnII GATC 9 cut(s) 41, 119, 223, 250, 397, 426, 440, 679, 905
Eam1104I CTCTTC 4 cut(s) 87, 884, 930, 1016
EarI CTCTTC 4 cut(s) 87, 884, 930, 1016
Ecl136II GAGCTC 1 cut(s) 693
Eco24I GRGCYC 1 cut(s) 695
Eco53kI GAGCTC 1 cut(s) 693
Eco57I CTGAAG 1 cut(s) 396
EcoICRI GAGCTC 1 cut(s) 693
EcoT38I GRGCYC 1 cut(s) 695
FaeI CATG 4 cut(s) 712, 919, 1109, 1140
FalI AAGNNNNNCTT 2 cut(s) 91, 123
FaqI GGGAC 3 cut(s) 329, 629, 834
FatI CATG 4 cut(s) 708, 915, 1105, 1136
FauI CCCGC 1 cut(s) 287
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 1 cut(s) 190
FokI GGATG 2 cut(s) 866, 937
FriOI GRGCYC 1 cut(s) 695
Fsp4HI GCNGC 1 cut(s) 190
FspBI CTAG 1 cut(s) 603
GluI GCNGC 1 cut(s) 190
HaeIII GGCC 1 cut(s) 103
HapII CCGG 3 cut(s) 53, 69, 130
Hin1II CATG 4 cut(s) 712, 919, 1109, 1140
HincII GTYRAC 1 cut(s) 1089
HindII GTYRAC 1 cut(s) 1089
HindIII AAGCTT 2 cut(s) 312, 812
HinfI GANTC 6 cut(s) 95, 342, 586, 712, 945, 1133
HpaII CCGG 3 cut(s) 53, 69, 130
Hpy166II GTNNAC 2 cut(s) 739, 1089
Hpy188I TCNGA 7 cut(s) 25, 46, 119, 184, 541, 595, 991
Hpy188III TCNNGA 6 cut(s) 86, 248, 306, 374, 424, 1137
Hpy8I GTNNAC 2 cut(s) 739, 1089
HpyAV CCTTC 2 cut(s) 655, 659
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 3 cut(s) 566, 674, 884
HpyF3I CTNAG 8 cut(s) 304, 381, 525, 540, 582, 594, 694, 990
Hsp92II CATG 4 cut(s) 712, 919, 1109, 1140
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 9 cut(s) 41, 119, 223, 250, 397, 426, 440, 679, 905
LmnI GCTCC 1 cut(s) 481
LweI GCATC 1 cut(s) 553
MaeI CTAG 1 cut(s) 603
MaeIII GTNAC 2 cut(s) 7, 272
MalI GATC 9 cut(s) 43, 121, 225, 252, 399, 428, 442, 681, 907
MboI GATC 9 cut(s) 41, 119, 223, 250, 397, 426, 440, 679, 905
MboII GAAGA 8 cut(s) 104, 255, 347, 707, 901, 947, 967, 1033
MflI RGATCY 5 cut(s) 119, 223, 397, 426, 905
MhlI GDGCHC 1 cut(s) 695
MluCI AATT 5 cut(s) 81, 419, 828, 1015, 1058
MlyI GAGTC 2 cut(s) 104, 351
MroXI GAANNNNTTC 1 cut(s) 313
MseI TTAA 8 cut(s) 201, 285, 504, 612, 687, 981, 999, 1101
MslI CAYNNNNRTG 1 cut(s) 656
MspCI CTTAAG 2 cut(s) 503, 686
MspI CCGG 3 cut(s) 53, 69, 130
MspR9I CCNGG 1 cut(s) 131
MvnI CGCG 2 cut(s) 167, 771
NciI CCSGG 1 cut(s) 131
NdeII GATC 9 cut(s) 41, 119, 223, 250, 397, 426, 440, 679, 905
NlaIII CATG 4 cut(s) 712, 919, 1109, 1140
NlaIV GGNNCC 1 cut(s) 798
NspI RCATGY 1 cut(s) 1109
NspV TTCGAA 1 cut(s) 1013
PagI TCATGA 1 cut(s) 1136
PcsI WCGNNNNNNNCGW 3 cut(s) 323, 759, 768
PdmI GAANNNNTTC 1 cut(s) 313
PfeI GAWTC 4 cut(s) 586, 712, 945, 1133
PflFI GACNNNGTC 1 cut(s) 341
PkrI GCNGC 1 cut(s) 191
PleI GAGTC 2 cut(s) 103, 350
PpsI GAGTC 2 cut(s) 103, 350
PshAI GACNNNNGTC 1 cut(s) 549
PsiI TTATAA 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 695
PspN4I GGNNCC 1 cut(s) 798
PsrI GAACNNNNNNTAC 2 cut(s) 512, 544
PsuI RGATCY 5 cut(s) 119, 223, 397, 426, 905
PsyI GACNNNGTC 1 cut(s) 341
RsaI GTAC 2 cut(s) 75, 530
RsaNI GTAC 2 cut(s) 74, 529
RseI CAYNNNNRTG 1 cut(s) 656
SacI GAGCTC 1 cut(s) 695
SaqAI TTAA 8 cut(s) 201, 285, 504, 612, 687, 981, 999, 1101
SatI GCNGC 1 cut(s) 190
Sau3AI GATC 9 cut(s) 41, 119, 223, 250, 397, 426, 440, 679, 905
ScaI AGTACT 1 cut(s) 530
SchI GAGTC 2 cut(s) 104, 351
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 695
SfaNI GCATC 1 cut(s) 553
SfuI TTCGAA 1 cut(s) 1013
SmiMI CAYNNNNRTG 1 cut(s) 656
SmlI CTYRAG 3 cut(s) 503, 686, 815
SmoI CTYRAG 3 cut(s) 503, 686, 815
Sse9I AATT 5 cut(s) 81, 419, 828, 1015, 1058
SsiI CCGC 6 cut(s) 190, 294, 769, 878, 965, 1008
SspMI CTAG 1 cut(s) 603
SstI GAGCTC 1 cut(s) 695
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 272
TaqI TCGA 2 cut(s) 533, 1013
TasI AATT 5 cut(s) 81, 419, 828, 1015, 1058
TatI WGTACW 1 cut(s) 528
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 4 cut(s) 586, 712, 945, 1133
Tru1I TTAA 8 cut(s) 201, 285, 504, 612, 687, 981, 999, 1101
Tru9I TTAA 8 cut(s) 201, 285, 504, 612, 687, 981, 999, 1101
TscAI CASTG 3 cut(s) 466, 586, 981
TspDTI ATGAA 5 cut(s) 105, 226, 640, 870, 941
TspRI CASTG 3 cut(s) 466, 586, 981
Tth111I GACNNNGTC 1 cut(s) 341
Vha464I CTTAAG 2 cut(s) 503, 686
XceI RCATGY 1 cut(s) 1109
XmnI GAANNNNTTC 1 cut(s) 313
XspI CTAG 1 cut(s) 603
ZrmI AGTACT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.