Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002710

Physical Location & Seq

Genomic Coordinates Reverse (-)

3693331 .. 3694044

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1051900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCAATCAATTTGGGGGTTTTGTTGCCAAATCCAAGCTTCAGACGGGTACCCTCCAAAATTTCTTGGAAGAAAAGGGTGGGAAATACGCACCTCAACTCCCCGTGACTTCCATTTAGGTGAAGCGCTGGGTCTAGACGCTAAGCTACGCGCCCGTCTTCCAGATTTCAACTTCCCATTATCACTTACAAGCTCGAATCCTGTGGTTGTGGGGAAGTGGTATTGCCCCTTCATGTTTGTTAAGGAGGGAACACCTAAAGATCAAATGAGTAGGACAAGGTTTTACGAGATGACACTTGAGCAAAGATGGGAACAAATATTCGCATGTGACGGTATTTATAGCGAAGGCAACGCCGTGGTGGTTGATGTTTTTGTTCAAAACGAGTCTGTTGCTGTTGGTGGGAACGCGGAAGCTGTGCATGAGGAGATGGATGTGGCTAATGGGGTTATGTGGTATAGGGGTTTAGACAATGTGGGGTTGAGCTTAAGAATTGTGGAGAGGATGAAATGGGAGCAACAAAGGTTTGGATGGTTTGGAGGGAACGAGAGGCAAGTAAGAGTGAAAAAAGTAGAGGAGTTTGGAGGGGTGTATAAGTGGAGAAAATTTGGTTGCTATGTTTTGGTGGAGAGGTTTGTGCTGAAAAGAATGGATGGAAGCTTGGTGCTAACTTACGATTTCAGACACACACATCATATTCGGAGCACATGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

238

Amino Acids

27.57

Weight (kDa)

8.24

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13470 AT1G13480 AT1G13490 AT1G13490 AT1G13500 AT1G13510 AT1G13520 AT1G13530 AT1G13540 AT1G13550
fragaria_vesca	FvH4_4g28550 FvH4_4g28552 FvH4_4g28553
malus_domestica	MD13G1051700.v1.1 MD13G1051900.v1.1 MD13G1052000.v1.1 MD16G1057800.v1.1
prunus_persica	Prupe.1G300000_v2.0.a1 Prupe.1G300100_v2.0.a1
pyrus_communis	pycom13g04620 pycom16g05060
rosa_chinensis	RchiOBHm_Chr4g0436651 RchiOBHm_Chr4g0436661
rosa_multiflora	Rmu_sc0003130.1_g000017 Rmu_sc0003130.1_g000018
rosa_roxburghii	Rroxscaffold_5G00377730 Rroxscaffold_5G00377740
rosa_rugosa	Rorug04G0294900 Rorug04G0295000
rosa_samantha	Rh4AG349400 Rh4AG349500 Rh4BG358100 Rh4BG358200 Rh4CG372500 Rh4CG372600 Rh4DG352300 Rh4DG352400
rosa_wichuraiana	Rw4G030560 Rw4G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	48
AccB1I	GGYRCC	1 cut(s)	48
AccII	CGCG	2 cut(s)	150, 407
AciI	CCGC	1 cut(s)	407
AcsI	RAATTY	2 cut(s)	59, 602
AcuI	CTGAAG	1 cut(s)	24
AfaI	GTAC	1 cut(s)	50
AfeI	AGCGCT	1 cut(s)	126
AflII	CTTAAG	1 cut(s)	484
AgsI	TTSAA	2 cut(s)	169, 377
AluBI	AGCT	6 cut(s)	38, 145, 192, 413, 483, 657
AluI	AGCT	6 cut(s)	38, 145, 192, 413, 483, 657
Alw21I	GWGCWC	1 cut(s)	704
Aor51HI	AGCGCT	1 cut(s)	126
ApoI	RAATTY	2 cut(s)	59, 602
Asp718I	GGTACC	1 cut(s)	48
AspLEI	GCGC	2 cut(s)	127, 152
AsuHPI	GGTGA	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	48
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	704
BccI	CCATC	4 cut(s)	300, 421, 522, 644
BceAI	ACGGC	1 cut(s)	338
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BfaI	CTAG	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	128
BfrI	CTTAAG	1 cut(s)	484
BlpI	GCTNAGC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	149
Bpu1102I	GCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	354
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	4 cut(s)	436, 507, 533, 655
BseRI	GAGGAG	2 cut(s)	437, 587
BseYI	CCCAGC	1 cut(s)	127
Bsh1236I	CGCG	2 cut(s)	150, 407
BshNI	GGYRCC	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	704
Bsp1286I	GDGCHC	1 cut(s)	704
Bsp143I	GATC	1 cut(s)	259
Bsp1720I	GCTNAGC	1 cut(s)	141
BspACI	CCGC	1 cut(s)	407
BspFNI	CGCG	2 cut(s)	150, 407
BspLI	GGNNCC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	48
BspTI	CTTAAG	1 cut(s)	484
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	332
BstAFI	CTTAAG	1 cut(s)	484
BstDEI	CTNAG	1 cut(s)	141
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	4 cut(s)	436, 507, 533, 655
BstFNI	CGCG	2 cut(s)	150, 407
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	2 cut(s)	127, 152
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstNSI	RCATGY	1 cut(s)	327
BstUI	CGCG	2 cut(s)	150, 407
BstV2I	GAAGAC	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	4 cut(s)	436, 507, 533, 655
CfoI	GCGC	2 cut(s)	127, 152
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	4 cut(s)	232, 324, 419, 705
CviJI	RGCY	7 cut(s)	38, 145, 192, 413, 437, 483, 657
CviKI_1	RGCY	7 cut(s)	38, 145, 192, 413, 437, 483, 657
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eco47III	AGCGCT	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	24
FaeI	CATG	4 cut(s)	235, 327, 422, 708
FatI	CATG	4 cut(s)	231, 323, 418, 704
FokI	GGATG	4 cut(s)	443, 514, 540, 662
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	2 cut(s)	126, 151
GsaI	CCCAGC	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	128
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	2 cut(s)	127, 152
Hin1II	CATG	4 cut(s)	235, 327, 422, 708
Hin6I	GCGC	2 cut(s)	125, 150
HinP1I	GCGC	2 cut(s)	125, 150
HindIII	AAGCTT	2 cut(s)	36, 655
HinfI	GANTC	2 cut(s)	196, 383
HphI	GGTGA	1 cut(s)	131
Hpy188I	TCNGA	3 cut(s)	43, 680, 699
Hpy188III	TCNNGA	2 cut(s)	134, 161
HpyAV	CCTTC	2 cut(s)	238, 338
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	2 cut(s)	4, 418
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	4 cut(s)	235, 327, 422, 708
HspAI	GCGC	2 cut(s)	125, 150
KpnI	GGTACC	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	2 cut(s)	511, 699
LpnPI	CCDG	3 cut(s)	113, 174, 213
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	2 cut(s)	104, 326
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	2 cut(s)	81, 149
MhlI	GDGCHC	1 cut(s)	704
MluCI	AATT	4 cut(s)	9, 59, 489, 602
MlyI	GAGTC	1 cut(s)	392
MseI	TTAA	2 cut(s)	240, 485
MslI	CAYNNNNRTG	2 cut(s)	117, 709
MspCI	CTTAAG	1 cut(s)	484
MvnI	CGCG	2 cut(s)	150, 407
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	4 cut(s)	235, 327, 422, 708
NlaIV	GGNNCC	1 cut(s)	50
NmuCI	GTSAC	2 cut(s)	104, 326
NspI	RCATGY	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PspFI	CCCAGC	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	50
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	2 cut(s)	117, 709
SaqAI	TTAA	2 cut(s)	240, 485
Sau3AI	GATC	1 cut(s)	259
SchI	GAGTC	1 cut(s)	392
SduI	GDGCHC	1 cut(s)	704
SmiMI	CAYNNNNRTG	2 cut(s)	117, 709
SmlI	CTYRAG	2 cut(s)	296, 484
SmoI	CTYRAG	2 cut(s)	296, 484
Sse9I	AATT	4 cut(s)	9, 59, 489, 602
SsiI	CCGC	1 cut(s)	407
SspI	AATATT	1 cut(s)	318
SspMI	CTAG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	1 cut(s)	194
TasI	AATT	4 cut(s)	9, 59, 489, 602
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	2 cut(s)	240, 485
Tru9I	TTAA	2 cut(s)	240, 485
TseFI	GTSAC	2 cut(s)	104, 326
Tsp45I	GTSAC	2 cut(s)	104, 326
TspDTI	ATGAA	2 cut(s)	220, 518
Vha464I	CTTAAG	1 cut(s)	484
XapI	RAATTY	2 cut(s)	59, 602
XbaI	TCTAGA	1 cut(s)	133
XceI	RCATGY	1 cut(s)	327
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.