Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002710

Physical Location & Seq

Genomic Coordinates Forward (+)

29494242 .. 29495856

Gene Structure 1615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G300100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGATCCCTGGGACCAAAAGTACAAGAAGCAAAAAGTTGATCAAGAAATTTAGAGAGAAAATGTACGTGACAAGGCCTCTTTCTATGTATCTAAGGGACCCTTCCATGGTCACCTTGCCACCCCCAGAGGGTCCAAACTCAGGTATTTTGGTTATCCAGGATGAAGAAGCGGAGCCAACAGTTTGCTTTGGTTTGTGTAAAGGCCACGAGCTCCATGACCTGCCTTTCCCTCAGAACAAGAATCTAAAGCTTCGCTATTCCACAGGAGTGGGAGAAAACCGACATGTTTCTCATTTCTACACTGCCTTCATTCCAGTTCTTAACCAGCCATTGGCTTCGAATCGGTACTATGCTATACAGTCGCGTGGAAGGCTTAAAGGGCAAGCATACACCTGCTCAACAGAGGAGGACTTGGGAACCTGCTGCTTCTGCACTTTTGTAAAGGACGTACCCTCACAGCCTTTCAATCCCAATAACATATACCAGCAATTTGAGATCCAGCTCAAAGGAAGATTCAATCGTGGCTTTGTTGCCAAAGCCATAGCTTCAGATGGGTACACTCCGAAGTTTCTTGGAAGAAAAGGGTGGGAAATATATACCTCAACTCCTCGTGACTTCGATTTAGGTGAAGCACGAGGTCTTGACACTGCACTACGTGTCCGCCTTCCAGATTTTGACTTCCCATTATCGCTTACAAGCTCGAACCCCGTGGTTGTGGGGAAGTGGTATTGTCCCTTCATGTTCATTAAGGAGGGTACACCAAAAGATCAAATGAGTAGGACCAGGTATTATGAGATGACACTTGAGCAAAGATGGGAACAAATATTTGCATGTGACAGTAGTAATAAGGAAGGCAACGCTGTGGTTGTTGATGTTTCTGTGCAAAGTGAGTATGTTGCTGTTGCTGGGAATGTGGAAGCTGTGCATGAAGAGAGGGATGTGGCTAATGGGCTTATGTGGTATAAGGGTTTTAACAATGTGGGAGGAGAGAGCGGTGTCGGGTTGAGCTTAGCAATTGTGGAGAGGATGAAGTGGGAGCAGCAAAGGTTTGGGTGGTTTGTGGGGAATGAGAGGCAAGTGAGAGTGAATAAAGTAGAGGAGTTTGGGGGAATGGGAGGGTGGAGGAGATTTAGTTGCTATGTTTTGGTTGAGAGGTTTGTATTGAAAAGAATGGATGGAAGCGTGGTCCTAACTCATGGTTTTAGACACACTCATCATATCAGGAGCAAATGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

413

Amino Acids

47.13

Weight (kDa)

8.99

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13470 AT1G13480 AT1G13490 AT1G13490 AT1G13500 AT1G13510 AT1G13520 AT1G13530 AT1G13540 AT1G13550
fragaria_vesca	FvH4_4g28550 FvH4_4g28552 FvH4_4g28553
malus_domestica	MD13G1051700.v1.1 MD13G1051900.v1.1 MD13G1052000.v1.1 MD16G1057800.v1.1
prunus_persica	Prupe.1G300000_v2.0.a1 Prupe.1G300100_v2.0.a1
pyrus_communis	pycom13g04620 pycom16g05060
rosa_chinensis	RchiOBHm_Chr4g0436651 RchiOBHm_Chr4g0436661
rosa_multiflora	Rmu_sc0003130.1_g000017 Rmu_sc0003130.1_g000018
rosa_roxburghii	Rroxscaffold_5G00377730 Rroxscaffold_5G00377740
rosa_rugosa	Rorug04G0294900 Rorug04G0295000
rosa_samantha	Rh4AG349400 Rh4AG349500 Rh4BG358100 Rh4BG358200 Rh4CG372500 Rh4CG372600 Rh4DG352300 Rh4DG352400
rosa_wichuraiana	Rw4G030560 Rw4G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	401
Acc36I	ACCTGC	3 cut(s)	228, 401, 428
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccBSI	CCGCTC	1 cut(s)	993
AccII	CGCG	1 cut(s)	364
AciI	CCGC	3 cut(s)	170, 661, 993
AclWI	GGATC	1 cut(s)	490
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	531
AdeI	CACNNNGTG	1 cut(s)	656
AfaI	GTAC	6 cut(s)	22, 65, 347, 450, 557, 757
AfiI	CCNNNNNNNGG	4 cut(s)	106, 128, 140, 331
AflIII	ACRYGT	2 cut(s)	283, 655
AgsI	TTSAA	3 cut(s)	466, 517, 1165
AjnI	CCWGG	3 cut(s)	7, 156, 782
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	7 cut(s)	211, 250, 502, 545, 699, 920, 1008
AluI	AGCT	7 cut(s)	211, 250, 502, 545, 699, 920, 1008
Alw21I	GWGCWC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	490
AoxI	GGCC	2 cut(s)	74, 202
ApeKI	GCWGC	2 cut(s)	423, 1039
ApoI	RAATTY	1 cut(s)	47
AspS9I	GGNCC	5 cut(s)	12, 97, 131, 780, 1186
AsuHPI	GGTGA	2 cut(s)	103, 638
AsuII	TTCGAA	1 cut(s)	338
AvaII	GGWCC	5 cut(s)	12, 97, 131, 780, 1186
BanII	GRGCYC	1 cut(s)	213
BarI	GAAGNNNNNNTAC	2 cut(s)	719, 751
BauI	CACGAG	3 cut(s)	206, 609, 633
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	410, 1051
BccI	CCATC	3 cut(s)	545, 807, 1169
BciT130I	CCWGG	3 cut(s)	9, 158, 784
BclI	TGATCA	1 cut(s)	39
BfuAI	ACCTGC	3 cut(s)	228, 401, 428
BisI	GCNGC	2 cut(s)	424, 1040
BlpI	GCTNAGC	1 cut(s)	1009
BlsI	GCNGC	2 cut(s)	425, 1041
Bme1390I	CCNGG	3 cut(s)	9, 158, 784
Bme18I	GGWCC	5 cut(s)	12, 97, 131, 780, 1186
BmgT120I	GGNCC	5 cut(s)	12, 97, 131, 780, 1186
BmiI	GGNNCC	6 cut(s)	13, 98, 99, 132, 174, 418
BmrFI	CCNGG	3 cut(s)	9, 158, 784
Bpu1102I	GCTNAGC	1 cut(s)	1009
Bpu14I	TTCGAA	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	824
BsaAI	YACGTR	2 cut(s)	67, 656
BsaJI	CCNNGG	4 cut(s)	7, 8, 105, 708
BsaXI	ACNNNNNCTCC	4 cut(s)	589, 619, 1117, 1147
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 128, 140, 331
Bse1I	ACTGG	1 cut(s)	314
BseBI	CCWGG	3 cut(s)	9, 158, 784
BseDI	CCNNGG	4 cut(s)	7, 8, 105, 708
BseGI	GGATG	4 cut(s)	166, 943, 1032, 1180
BseLI	CCNNNNNNNGG	4 cut(s)	106, 128, 140, 331
BseMII	CTCAG	2 cut(s)	153, 245
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	5 cut(s)	419, 597, 999, 1112, 1138
BseXI	GCAGC	2 cut(s)	410, 1051
BseYI	CCCAGC	1 cut(s)	905
BsgI	GTGCAG	2 cut(s)	415, 633
Bsh1236I	CGCG	1 cut(s)	364
BshFI	GGCC	2 cut(s)	76, 204
BsiHKAI	GWGCWC	1 cut(s)	213
BslFI	GGGAC	3 cut(s)	25, 110, 717
BslI	CCNNNNNNNGG	4 cut(s)	106, 128, 140, 331
BsmFI	GGGAC	3 cut(s)	25, 110, 717
BsnI	GGCC	2 cut(s)	76, 204
Bsp119I	TTCGAA	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	4 cut(s)	3, 39, 495, 766
Bsp1720I	GCTNAGC	1 cut(s)	1009
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	3 cut(s)	170, 661, 993
BspANI	GGCC	2 cut(s)	76, 204
BspCNI	CTCAG	2 cut(s)	152, 244
BspFNI	CGCG	1 cut(s)	364
BspLI	GGNNCC	6 cut(s)	13, 98, 99, 132, 174, 418
BspMI	ACCTGC	3 cut(s)	228, 401, 428
BspPI	GGATC	1 cut(s)	490
BspT104I	TTCGAA	1 cut(s)	338
BsrBI	CCGCTC	1 cut(s)	993
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	4 cut(s)	7, 8, 105, 708
BssMI	GATC	4 cut(s)	3, 39, 495, 766
BssSI	CACGAG	3 cut(s)	206, 609, 633
BssT1I	CCWWGG	1 cut(s)	105
Bst2BI	CACGAG	3 cut(s)	206, 609, 633
Bst2UI	CCWGG	3 cut(s)	9, 158, 784
Bst4CI	ACNGT	3 cut(s)	181, 360, 839
Bst6I	CTCTTC	1 cut(s)	924
BstBAI	YACGTR	2 cut(s)	67, 656
BstBI	TTCGAA	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	4 cut(s)	92, 139, 231, 1009
BstDSI	CCRYGG	2 cut(s)	105, 708
BstEII	GGTNACC	1 cut(s)	109
BstF5I	GGATG	4 cut(s)	166, 943, 1032, 1180
BstFNI	CGCG	1 cut(s)	364
BstKTI	GATC	4 cut(s)	6, 42, 498, 769
BstMBI	GATC	4 cut(s)	3, 39, 495, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	370, 379, 429
BstNI	CCWGG	3 cut(s)	9, 158, 784
BstNSI	RCATGY	2 cut(s)	287, 834
BstPI	GGTNACC	1 cut(s)	109
BstSCI	CCNGG	3 cut(s)	7, 156, 782
BstUI	CGCG	1 cut(s)	364
BstV1I	GCAGC	2 cut(s)	410, 1051
BstX2I	RGATCY	1 cut(s)	495
BstXI	CCANNNNNNTGG	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	495
BsuRI	GGCC	2 cut(s)	76, 204
BtgI	CCRYGG	2 cut(s)	105, 708
BtsCI	GGATG	4 cut(s)	166, 943, 1032, 1180
BtsI	GCAGTG	2 cut(s)	300, 645
BtsIMutI	CAGTG	2 cut(s)	300, 645
BveI	ACCTGC	3 cut(s)	228, 401, 428
Cac8I	GCNNGC	1 cut(s)	384
Cfr13I	GGNCC	5 cut(s)	12, 97, 131, 780, 1186
CsiI	ACCWGGT	1 cut(s)	782
Csp6I	GTAC	6 cut(s)	21, 64, 346, 449, 556, 756
CviAII	CATG	7 cut(s)	106, 215, 284, 739, 831, 926, 1196
CviQI	GTAC	6 cut(s)	21, 64, 346, 449, 556, 756
DdeI	CTNAG	4 cut(s)	92, 139, 231, 1009
DpnI	GATC	4 cut(s)	5, 41, 497, 768
DpnII	GATC	4 cut(s)	3, 39, 495, 766
DraIII	CACNNNGTG	1 cut(s)	656
Eam1104I	CTCTTC	1 cut(s)	924
EarI	CTCTTC	1 cut(s)	924
EciI	GGCGGA	1 cut(s)	650
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	213
Eco47I	GGWCC	5 cut(s)	12, 97, 131, 780, 1186
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	531
Eco91I	GGTNACC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	97
EcoO65I	GGTNACC	1 cut(s)	109
EcoRII	CCWGG	3 cut(s)	7, 156, 782
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	7 cut(s)	109, 218, 287, 742, 834, 929, 1199
FalI	AAGNNNNNCTT	2 cut(s)	85, 117
FaqI	GGGAC	3 cut(s)	25, 110, 717
FatI	CATG	7 cut(s)	105, 214, 283, 738, 830, 925, 1195
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	424, 1040
FokI	GGATG	4 cut(s)	173, 950, 1039, 1187
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	424, 1040
GluI	GCNGC	2 cut(s)	424, 1040
GsaI	CCCAGC	1 cut(s)	909
HaeIII	GGCC	2 cut(s)	76, 204
Hin1II	CATG	7 cut(s)	109, 218, 287, 742, 834, 929, 1199
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	3 cut(s)	241, 340, 513
HphI	GGTGA	2 cut(s)	103, 638
Hpy166II	GTNNAC	2 cut(s)	558, 758
Hpy188I	TCNGA	3 cut(s)	234, 550, 564
Hpy188III	TCNNGA	5 cut(s)	43, 611, 641, 668, 1222
Hpy8I	GTNNAC	2 cut(s)	558, 758
HpyAV	CCTTC	6 cut(s)	111, 316, 363, 674, 745, 845
HpyCH4III	ACNGT	3 cut(s)	181, 360, 839
HpyCH4IV	ACGT	3 cut(s)	66, 447, 655
HpyCH4V	TGCA	5 cut(s)	432, 650, 830, 883, 925
HpyF10VI	GCNNNNNNNGC	3 cut(s)	370, 379, 429
HpyF3I	CTNAG	4 cut(s)	92, 139, 231, 1009
HpySE526I	ACGT	3 cut(s)	66, 447, 655
Hsp92II	CATG	7 cut(s)	109, 218, 287, 742, 834, 929, 1199
KflI	GGGWCCC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	4 cut(s)	3, 39, 495, 766
LmnI	GCTCC	4 cut(s)	172, 216, 1036, 1224
Lsp1109I	GCAGC	2 cut(s)	410, 1051
MabI	ACCWGGT	1 cut(s)	782
MaeII	ACGT	3 cut(s)	66, 447, 655
MaeIII	GTNAC	4 cut(s)	67, 109, 611, 833
MalI	GATC	4 cut(s)	5, 41, 497, 768
MbiI	CCGCTC	1 cut(s)	993
MboI	GATC	4 cut(s)	3, 39, 495, 766
MboII	GAAGA	4 cut(s)	176, 522, 588, 941
MfeI	CAATTG	1 cut(s)	1014
MflI	RGATCY	1 cut(s)	495
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	3 cut(s)	47, 488, 1014
MseI	TTAA	4 cut(s)	321, 375, 747, 972
MslI	CAYNNNNRTG	1 cut(s)	266
MspR9I	CCNGG	3 cut(s)	9, 158, 784
MunI	CAATTG	1 cut(s)	1014
MvaI	CCWGG	3 cut(s)	9, 158, 784
MvnI	CGCG	1 cut(s)	364
MwoI	GCNNNNNNNGC	3 cut(s)	370, 379, 429
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	4 cut(s)	3, 39, 495, 766
NlaIII	CATG	7 cut(s)	109, 218, 287, 742, 834, 929, 1199
NlaIV	GGNNCC	6 cut(s)	13, 98, 99, 132, 174, 418
NmuCI	GTSAC	4 cut(s)	67, 109, 611, 833
NspI	RCATGY	2 cut(s)	287, 834
NspV	TTCGAA	1 cut(s)	338
OliI	CACNNNNGTG	1 cut(s)	266
PaqCI	CACCTGC	1 cut(s)	401
PasI	CCCWGGG	1 cut(s)	8
PceI	AGGCCT	1 cut(s)	76
PciI	ACATGT	1 cut(s)	283
PfeI	GAWTC	3 cut(s)	241, 340, 513
PflMI	CCANNNNNTGG	1 cut(s)	331
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	2 cut(s)	425, 1041
Ppu21I	YACGTR	2 cut(s)	67, 656
PpuMI	RGGWCCY	1 cut(s)	97
PscI	ACATGT	1 cut(s)	283
Psp124BI	GAGCTC	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	97
Psp6I	CCWGG	3 cut(s)	7, 156, 782
PspEI	GGTNACC	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	905
PspGI	CCWGG	3 cut(s)	7, 156, 782
PspN4I	GGNNCC	6 cut(s)	13, 98, 99, 132, 174, 418
PspPI	GGNCC	5 cut(s)	12, 97, 131, 780, 1186
PspPPI	RGGWCCY	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	495
RsaI	GTAC	6 cut(s)	22, 65, 347, 450, 557, 757
RsaNI	GTAC	6 cut(s)	21, 64, 346, 449, 556, 756
RseI	CAYNNNNRTG	1 cut(s)	266
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	4 cut(s)	321, 375, 747, 972
SatI	GCNGC	2 cut(s)	424, 1040
Sau3AI	GATC	4 cut(s)	3, 39, 495, 766
Sau96I	GGNCC	5 cut(s)	12, 97, 131, 780, 1186
ScrFI	CCNGG	3 cut(s)	9, 158, 784
SduI	GDGCHC	1 cut(s)	213
SexAI	ACCWGGT	1 cut(s)	782
SfuI	TTCGAA	1 cut(s)	338
SinI	GGWCC	5 cut(s)	12, 97, 131, 780, 1186
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
Sse9I	AATT	3 cut(s)	47, 488, 1014
SseBI	AGGCCT	1 cut(s)	76
SsiI	CCGC	3 cut(s)	170, 661, 993
SspI	AATATT	1 cut(s)	825
SstI	GAGCTC	1 cut(s)	213
StuI	AGGCCT	1 cut(s)	76
StyD4I	CCNGG	3 cut(s)	7, 156, 782
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	3 cut(s)	181, 360, 839
TaiI	ACGT	3 cut(s)	69, 450, 658
TaqI	TCGA	3 cut(s)	338, 618, 701
TasI	AATT	3 cut(s)	47, 488, 1014
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	3 cut(s)	241, 340, 513
Tru1I	TTAA	4 cut(s)	321, 375, 747, 972
Tru9I	TTAA	4 cut(s)	321, 375, 747, 972
TscAI	CASTG	2 cut(s)	307, 652
TseFI	GTSAC	4 cut(s)	67, 109, 611, 833
TseI	GCWGC	2 cut(s)	423, 1039
Tsp45I	GTSAC	4 cut(s)	67, 109, 611, 833
TspDTI	ATGAA	6 cut(s)	177, 298, 727, 733, 942, 1043
TspRI	CASTG	2 cut(s)	307, 652
Van91I	CCANNNNNTGG	1 cut(s)	331
VpaK11BI	GGWCC	5 cut(s)	12, 97, 131, 780, 1186
XapI	RAATTY	1 cut(s)	47
XceI	RCATGY	2 cut(s)	287, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.