RchiOBHm_Chr4g0436661

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002710
Physical Location & Seq
Reverse (-)
59913281 .. 59914771
1491 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40498

Sequence Viewer

Length: 1065 bp
ATGTATGTGACAAGACCTCTCTCAGGGTACAAAAAGTCTCCTGCTGATCTTTCATTGCCCCCTCCTGAAGGTCCAAATTCTGGCATTCTTGTTATCCAAGATGAAGAACCCAAGTGCTGCATGAATTTGTTCAAGACTGATATGATTAAAGACCTGCCTCTCCCTCAGAACAGAAGTCTAGAGCTTTACTATGCACAAGGGTTTCATCCAATGAGAGAACTTCATTTTTTCAAAGTTCTATTCATCCCAGTTCTGAATCAGCCCTTGTCTTCCAATCAGTACTACGCAATATATCCATTTGGGAAGGATAGAGGGGAAGGGTACACAAGCTCAAAAGAGGATGAAACAGACATGGACCCATGTTGCTTCAGCAGCTGTTCTAATGATGTAAAGCCGCAACGTTTTGATCCCAAAAACCTGTACCAGCAATATCAGATTGATCTTCACAGAAAACTTGTGAACATTTCTGGTGGGTTTGTGGCTAATTCTATGGCTACAGATGGTTGTCCCCCAGATGCATTGTGGAGAAGAGGGTGGAAACTCACTTGCTCAACGGCACAGGAGTTCGAACTAGGCACACCGAAACCGTCGAGAACAATATACTATGAGATGACACTTGAGCAAAGATGGGAACAAATATTTGTGAAGGAGCGTAATAAGGAACATGATATAGGCAATGCTGTGAATGTGGATGTTGTTGTGCAAAGTGAGGTGGTTGCAGTTGTGCTTGGAGGGAGGGAAGGTGTTTGTGATGAGAAACATGTGGATGATGATGGGGTGGTGTGGTTTAAGAGTGTCAACAATGTGGGTGAAGAGAGAAGGGTCGGGGTGAGCTTAGCGATTGTTGAGAGGATGAAGTGGGAGCAAGAAAGGGTTGGGTGGGTTGGGGGAGATGAAGGCAAAGTGAGAGTGGAGAGAGTTGAGGTATATGGAGGGATGGGTGAGTGGAAGAAGTTTGGTTGTTTTGTATTGGTTGAGAGGTTTGTGTTGAAAAGAATGAATGGGAGCTTGTTAGTTAGCCATGAGTTCAAGCACACTCATCAGATCAAGTGTAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

354

Amino Acids

40.62

Weight (kDa)

5.99

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 123 3.7e-30 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 162
AccB7I CCANNNNNTGG 1 cut(s) 80
AciI CCGC 1 cut(s) 395
AclI AACGTT 1 cut(s) 400
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 2 cut(s) 76, 124
AcuI CTGAAG 2 cut(s) 87, 352
AfaI GTAC 4 cut(s) 29, 281, 323, 422
AfiI CCNNNNNNNGG 3 cut(s) 23, 68, 80
AflIII ACRYGT 1 cut(s) 760
AgsI TTSAA 4 cut(s) 133, 232, 991, 1030
AluBI AGCT 5 cut(s) 184, 330, 375, 834, 1008
AluI AGCT 5 cut(s) 184, 330, 375, 834, 1008
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 401
AlwNI CAGNNNCTG 1 cut(s) 375
ApeKI GCWGC 2 cut(s) 117, 372
ApoI RAATTY 2 cut(s) 76, 124
Asp700I GAANNNNTTC 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 71, 355
AsuHPI GGTGA 3 cut(s) 821, 841, 953
AsuII TTCGAA 1 cut(s) 567
AvaII GGWCC 2 cut(s) 71, 355
BbsI GAAGAC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 104, 384
BccI CCATC 4 cut(s) 494, 621, 767, 931
BceAI ACGGC 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 2 cut(s) 179, 572
BfmI CTRYAG 1 cut(s) 495
BfuAI ACCTGC 1 cut(s) 162
BisI GCNGC 3 cut(s) 118, 373, 395
BlpI GCTNAGC 1 cut(s) 835
BlsI GCNGC 3 cut(s) 119, 374, 396
BmcAI AGTACT 1 cut(s) 281
Bme18I GGWCC 2 cut(s) 71, 355
BmgT120I GGNCC 2 cut(s) 71, 355
BmiI GGNNCC 1 cut(s) 357
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 505
BmuI ACTGGG 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 261
Bpu1102I GCTNAGC 1 cut(s) 835
Bpu14I TTCGAA 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 638
BsaXI ACNNNNNCTCC 2 cut(s) 727, 757
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 68, 80
Bse1I ACTGG 1 cut(s) 248
Bse3DI GCAATG 2 cut(s) 53, 682
BseGI GGATG 7 cut(s) 205, 243, 346, 697, 772, 858, 942
BseLI CCNNNNNNNGG 3 cut(s) 23, 68, 80
BseMI GCAATG 2 cut(s) 53, 682
BseMII CTCAG 2 cut(s) 36, 179
BseNI ACTGG 1 cut(s) 248
BseXI GCAGC 2 cut(s) 104, 384
BslFI GGGAC 1 cut(s) 492
BslI CCNNNNNNNGG 3 cut(s) 23, 68, 80
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 492
BsmI GAATGC 1 cut(s) 84
Bsp119I TTCGAA 1 cut(s) 567
Bsp143I GATC 4 cut(s) 46, 406, 439, 1044
Bsp1720I GCTNAGC 1 cut(s) 835
BspACI CCGC 1 cut(s) 395
BspCNI CTCAG 2 cut(s) 35, 178
BspLI GGNNCC 1 cut(s) 357
BspMI ACCTGC 1 cut(s) 162
BspPI GGATC 1 cut(s) 401
BspT104I TTCGAA 1 cut(s) 567
BsrDI GCAATG 2 cut(s) 53, 682
BsrI ACTGG 1 cut(s) 248
BssMI GATC 4 cut(s) 46, 406, 439, 1044
Bst4CI ACNGT 1 cut(s) 588
Bst6I CTCTTC 2 cut(s) 523, 807
BstBI TTCGAA 1 cut(s) 567
BstDEI CTNAG 3 cut(s) 22, 165, 835
BstENI CCTNNNNNAGG 2 cut(s) 21, 66
BstF5I GGATG 7 cut(s) 205, 243, 346, 697, 772, 858, 942
BstKTI GATC 4 cut(s) 49, 409, 442, 1047
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 4 cut(s) 46, 406, 439, 1044
BstMWI GCNNNNNNNGC 1 cut(s) 372
BstNSI RCATGY 1 cut(s) 764
BstSFI CTRYAG 1 cut(s) 495
BstV1I GCAGC 2 cut(s) 104, 384
BstV2I GAAGAC 1 cut(s) 261
BtsCI GGATG 7 cut(s) 205, 243, 346, 697, 772, 858, 942
BveI ACCTGC 1 cut(s) 162
CaiI CAGNNNCTG 1 cut(s) 375
Cfr13I GGNCC 2 cut(s) 71, 355
Csp6I GTAC 4 cut(s) 28, 280, 322, 421
CviAII CATG 6 cut(s) 121, 352, 360, 665, 761, 1022
CviQI GTAC 4 cut(s) 28, 280, 322, 421
DdeI CTNAG 3 cut(s) 22, 165, 835
DpnI GATC 4 cut(s) 48, 408, 441, 1046
DpnII GATC 4 cut(s) 46, 406, 439, 1044
Eam1104I CTCTTC 2 cut(s) 523, 807
EarI CTCTTC 2 cut(s) 523, 807
Eco47I GGWCC 2 cut(s) 71, 355
Eco57I CTGAAG 2 cut(s) 87, 352
EcoNI CCTNNNNNAGG 2 cut(s) 21, 66
EcoT22I ATGCAT 1 cut(s) 520
FaeI CATG 6 cut(s) 124, 355, 363, 668, 764, 1025
FaqI GGGAC 1 cut(s) 492
FatI CATG 6 cut(s) 120, 351, 359, 664, 760, 1021
Fnu4HI GCNGC 3 cut(s) 118, 373, 395
FokI GGATG 7 cut(s) 192, 230, 353, 704, 779, 865, 949
Fsp4HI GCNGC 3 cut(s) 118, 373, 395
FspBI CTAG 2 cut(s) 179, 572
GluI GCNGC 3 cut(s) 118, 373, 395
Hin1II CATG 6 cut(s) 124, 355, 363, 668, 764, 1025
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HinfI GANTC 1 cut(s) 256
HphI GGTGA 3 cut(s) 821, 841, 953
Hpy166II GTNNAC 3 cut(s) 324, 460, 799
Hpy188I TCNGA 4 cut(s) 168, 255, 435, 1044
Hpy188III TCNNGA 4 cut(s) 65, 133, 179, 591
Hpy8I GTNNAC 3 cut(s) 324, 460, 799
Hpy99I CGWCG 1 cut(s) 592
HpyAV CCTTC 7 cut(s) 62, 298, 311, 640, 734, 813, 890
HpyCH4III ACNGT 1 cut(s) 588
HpyCH4IV ACGT 1 cut(s) 400
HpyCH4V TGCA 5 cut(s) 120, 194, 518, 703, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 372
HpyF3I CTNAG 3 cut(s) 22, 165, 835
HpySE526I ACGT 1 cut(s) 400
Hsp92II CATG 6 cut(s) 124, 355, 363, 668, 764, 1025
Kzo9I GATC 4 cut(s) 46, 406, 439, 1044
LmnI GCTCC 3 cut(s) 649, 862, 1005
Lsp1109I GCAGC 2 cut(s) 104, 384
LweI GCATC 1 cut(s) 505
MaeI CTAG 2 cut(s) 179, 572
MaeII ACGT 1 cut(s) 400
MaeIII GTNAC 1 cut(s) 7
MalI GATC 4 cut(s) 48, 408, 441, 1046
MboI GATC 4 cut(s) 46, 406, 439, 1044
MboII GAAGA 6 cut(s) 116, 261, 434, 540, 824, 961
MluCI AATT 3 cut(s) 76, 124, 484
Mph1103I ATGCAT 1 cut(s) 520
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 2 cut(s) 147, 789
MslI CAYNNNNRTG 1 cut(s) 765
MspA1I CMGCKG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 372
NdeII GATC 4 cut(s) 46, 406, 439, 1044
NlaIII CATG 6 cut(s) 124, 355, 363, 668, 764, 1025
NlaIV GGNNCC 1 cut(s) 357
NmuCI GTSAC 1 cut(s) 7
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 1 cut(s) 764
NspV TTCGAA 1 cut(s) 567
PciI ACATGT 1 cut(s) 760
PctI GAATGC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 256
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 3 cut(s) 119, 374, 396
PscI ACATGT 1 cut(s) 760
Psp1406I AACGTT 1 cut(s) 400
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 2 cut(s) 71, 355
PstNI CAGNNNCTG 1 cut(s) 375
PvuII CAGCTG 1 cut(s) 375
RsaI GTAC 4 cut(s) 29, 281, 323, 422
RsaNI GTAC 4 cut(s) 28, 280, 322, 421
RseI CAYNNNNRTG 1 cut(s) 765
SaqAI TTAA 2 cut(s) 147, 789
SatI GCNGC 3 cut(s) 118, 373, 395
Sau3AI GATC 4 cut(s) 46, 406, 439, 1044
Sau96I GGNCC 2 cut(s) 71, 355
ScaI AGTACT 1 cut(s) 281
SfaNI GCATC 1 cut(s) 505
SfcI CTRYAG 1 cut(s) 495
SfuI TTCGAA 1 cut(s) 567
SinI GGWCC 2 cut(s) 71, 355
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
Sse9I AATT 3 cut(s) 76, 124, 484
SsiI CCGC 1 cut(s) 395
SspI AATATT 1 cut(s) 639
SspMI CTAG 2 cut(s) 179, 572
TaaI ACNGT 1 cut(s) 588
TaiI ACGT 1 cut(s) 403
TaqI TCGA 2 cut(s) 567, 590
TasI AATT 3 cut(s) 76, 124, 484
TatI WGTACW 1 cut(s) 279
TauI GCSGC 1 cut(s) 397
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 2 cut(s) 147, 789
Tru9I TTAA 2 cut(s) 147, 789
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 2 cut(s) 117, 372
Tsp45I GTSAC 1 cut(s) 7
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 71, 355
XagI CCTNNNNNAGG 2 cut(s) 21, 66
XapI RAATTY 2 cut(s) 76, 124
XbaI TCTAGA 1 cut(s) 178
XceI RCATGY 1 cut(s) 764
XcmI CCANNNNNNNNNTGG 1 cut(s) 519
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 2 cut(s) 179, 572
ZrmI AGTACT 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.