Rh4CG372600

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002710
Physical Location & Seq
Reverse (-)
62725548 .. 62726846
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG372600.1

Sequence Viewer

Length: 1101 bp
ATGTATGTGACAAGACCTCTCTCATTGTACAAAAAGTCTCCTGCTGATCTTTCATTGCCTCCTCCTGAAGGTCCAAATTCTGGTATTCTTGTTATCCAAGATGAAGAACCCAAGTGCTGTATGAATTTGTTCAAGAGTGATATGATTAAAGACCTGCCTCTCCCTCAGAACAGAAGTCTAGAGCTTTACTATGCACAAGGGTTTTATCCAATGAGAGAACTTCATTTTTTCAAAGTTCTATTCATCCCAGTTCTCAATCAGCCCCTGTCTTCCAATCAGTACTACGCAATATATCCATTTGGGAAGGATAGAGGGGAAGGGTACACAAGCTCAAAAGAGGATGAAACAGACATGGACCCATGTTGCTTCAGCAGCTGTTCTAATGATGTAAAGCCGCAACGTTTTGATCCCAAAAACCTGTACCAGCAATATCAGATTGATCTTCACAGAAAAATTGTGAACATTTCTGGTGGGTTTGTGGCTAATTCTATGGCTAAAGATGGTTGTCCCCCAGATGCATTGTGGAGAAGAGGGTGGAAACTCACTTGCTCAACGGCACATGAGTTCGAACTAGGGAAGTGGTATTGTCCATTCATGTTTGTCAAGGAAGGCACACCGAAACCGTCGAGAACAATATACTATGAGATGACACTTGAGCAAAGATGGGAACAAATATTTGTGAAGGAGCGTAGTAAGGAACATGATATAGGCAATGCTGTGAATGTGGATGTTGTTGTGCAAAGTGAGGTGGTTGTGGTTGTGCTTGGAGGGAGGGAAGGTGTTTGTGATGAGAAACAAGTGGATGATGATGGGGTGGTGTGGTTTAAGAGTGTCAACAATGTGGATGAAGAGAGAAGGGTCGGGGTGAGCTTAGCGATTGTTGAGAGGATGAAGTGGGAGCAAGAAAGGGTTGGGTGGGTTGGGGGAGATGAAGGCAAAGTGAGAGTGGAGAGAGTTGAGGAATATGGAGGGATGGGTGAGTGGAAGAAGTTTGGTTGTTTTGTATTGGTTGAGAGGTTTGTGTTGAAAAGAATGAATGGGAGCTTGTTAGTTAGCCATGAGTTCAAGCACACTCATCAGATTAAGTGTAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

366

Amino Acids

42.32

Weight (kDa)

5.93

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 123 5.2e-30 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 162
AccB7I CCANNNNNTGG 1 cut(s) 80
AciI CCGC 1 cut(s) 395
AclI AACGTT 1 cut(s) 400
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 2 cut(s) 76, 124
AcuI CTGAAG 2 cut(s) 87, 352
AfaI GTAC 4 cut(s) 29, 281, 323, 422
AfiI CCNNNNNNNGG 2 cut(s) 68, 80
AgsI TTSAA 4 cut(s) 133, 232, 1027, 1066
AluBI AGCT 5 cut(s) 184, 330, 375, 870, 1044
AluI AGCT 5 cut(s) 184, 330, 375, 870, 1044
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 401
AlwNI CAGNNNCTG 2 cut(s) 265, 375
ApeKI GCWGC 1 cut(s) 372
ApoI RAATTY 2 cut(s) 76, 124
Asp700I GAANNNNTTC 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 71, 355
AsuHPI GGTGA 2 cut(s) 877, 989
AsuII TTCGAA 1 cut(s) 567
AvaII GGWCC 2 cut(s) 71, 355
BbsI GAAGAC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 384
BccI CCATC 4 cut(s) 494, 657, 803, 967
BceAI ACGGC 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 2 cut(s) 179, 572
BfuAI ACCTGC 1 cut(s) 162
BisI GCNGC 2 cut(s) 373, 395
BlpI GCTNAGC 1 cut(s) 871
BlsI GCNGC 2 cut(s) 374, 396
BmcAI AGTACT 1 cut(s) 281
Bme18I GGWCC 2 cut(s) 71, 355
BmgT120I GGNCC 2 cut(s) 71, 355
BmiI GGNNCC 1 cut(s) 357
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 505
BmuI ACTGGG 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 261
Bpu1102I GCTNAGC 1 cut(s) 871
Bpu14I TTCGAA 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 674
BsaXI ACNNNNNCTCC 2 cut(s) 763, 793
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 80
Bse1I ACTGG 1 cut(s) 248
Bse3DI GCAATG 2 cut(s) 53, 718
BseGI GGATG 7 cut(s) 243, 346, 733, 808, 850, 894, 978
BseLI CCNNNNNNNGG 2 cut(s) 68, 80
BseMI GCAATG 2 cut(s) 53, 718
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 384
BslFI GGGAC 1 cut(s) 492
BslI CCNNNNNNNGG 2 cut(s) 68, 80
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 492
Bsp119I TTCGAA 1 cut(s) 567
Bsp1407I TGTACA 1 cut(s) 27
Bsp143I GATC 3 cut(s) 46, 406, 439
Bsp1720I GCTNAGC 1 cut(s) 871
BspACI CCGC 1 cut(s) 395
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 357
BspMI ACCTGC 1 cut(s) 162
BspPI GGATC 1 cut(s) 401
BspT104I TTCGAA 1 cut(s) 567
BsrDI GCAATG 2 cut(s) 53, 718
BsrGI TGTACA 1 cut(s) 27
BsrI ACTGG 1 cut(s) 248
BssMI GATC 3 cut(s) 46, 406, 439
Bst4CI ACNGT 1 cut(s) 624
Bst6I CTCTTC 2 cut(s) 523, 843
BstAUI TGTACA 1 cut(s) 27
BstBI TTCGAA 1 cut(s) 567
BstDEI CTNAG 2 cut(s) 165, 871
BstENI CCTNNNNNAGG 1 cut(s) 66
BstF5I GGATG 7 cut(s) 243, 346, 733, 808, 850, 894, 978
BstKTI GATC 3 cut(s) 49, 409, 442
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 3 cut(s) 46, 406, 439
BstMWI GCNNNNNNNGC 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 384
BstV2I GAAGAC 1 cut(s) 261
BtsCI GGATG 7 cut(s) 243, 346, 733, 808, 850, 894, 978
BveI ACCTGC 1 cut(s) 162
CaiI CAGNNNCTG 2 cut(s) 265, 375
Cfr13I GGNCC 2 cut(s) 71, 355
Csp6I GTAC 4 cut(s) 28, 280, 322, 421
CviAII CATG 6 cut(s) 352, 360, 560, 595, 701, 1058
CviQI GTAC 4 cut(s) 28, 280, 322, 421
DdeI CTNAG 2 cut(s) 165, 871
DpnI GATC 3 cut(s) 48, 408, 441
DpnII GATC 3 cut(s) 46, 406, 439
Eam1104I CTCTTC 2 cut(s) 523, 843
EarI CTCTTC 2 cut(s) 523, 843
Eco47I GGWCC 2 cut(s) 71, 355
Eco57I CTGAAG 2 cut(s) 87, 352
EcoNI CCTNNNNNAGG 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 520
FaeI CATG 6 cut(s) 355, 363, 563, 598, 704, 1061
FaqI GGGAC 1 cut(s) 492
FatI CATG 6 cut(s) 351, 359, 559, 594, 700, 1057
Fnu4HI GCNGC 2 cut(s) 373, 395
FokI GGATG 7 cut(s) 230, 353, 740, 815, 857, 901, 985
Fsp4HI GCNGC 2 cut(s) 373, 395
FspBI CTAG 2 cut(s) 179, 572
GluI GCNGC 2 cut(s) 373, 395
Hin1II CATG 6 cut(s) 355, 363, 563, 598, 704, 1061
HincII GTYRAC 1 cut(s) 835
HindII GTYRAC 1 cut(s) 835
HphI GGTGA 2 cut(s) 877, 989
Hpy166II GTNNAC 3 cut(s) 324, 460, 835
Hpy188I TCNGA 3 cut(s) 168, 435, 1080
Hpy188III TCNNGA 4 cut(s) 65, 133, 179, 627
Hpy8I GTNNAC 3 cut(s) 324, 460, 835
Hpy99I CGWCG 1 cut(s) 628
HpyAV CCTTC 8 cut(s) 62, 298, 311, 602, 676, 770, 849, 926
HpyCH4III ACNGT 1 cut(s) 624
HpyCH4IV ACGT 1 cut(s) 400
HpyCH4V TGCA 3 cut(s) 194, 518, 739
HpyF10VI GCNNNNNNNGC 1 cut(s) 372
HpyF3I CTNAG 2 cut(s) 165, 871
HpySE526I ACGT 1 cut(s) 400
Hsp92II CATG 6 cut(s) 355, 363, 563, 598, 704, 1061
Kzo9I GATC 3 cut(s) 46, 406, 439
LmnI GCTCC 3 cut(s) 685, 898, 1041
Lsp1109I GCAGC 1 cut(s) 384
LweI GCATC 1 cut(s) 505
MaeI CTAG 2 cut(s) 179, 572
MaeII ACGT 1 cut(s) 400
MaeIII GTNAC 1 cut(s) 7
MalI GATC 3 cut(s) 48, 408, 441
MboI GATC 3 cut(s) 46, 406, 439
MboII GAAGA 6 cut(s) 116, 261, 434, 540, 860, 997
MluCI AATT 4 cut(s) 76, 124, 453, 484
Mph1103I ATGCAT 1 cut(s) 520
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 3 cut(s) 147, 825, 1083
MspA1I CMGCKG 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 372
NdeII GATC 3 cut(s) 46, 406, 439
NlaIII CATG 6 cut(s) 355, 363, 563, 598, 704, 1061
NlaIV GGNNCC 1 cut(s) 357
NmuCI GTSAC 1 cut(s) 7
NsiI ATGCAT 1 cut(s) 520
NspV TTCGAA 1 cut(s) 567
PdmI GAANNNNTTC 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 2 cut(s) 374, 396
Psp1406I AACGTT 1 cut(s) 400
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 2 cut(s) 71, 355
PstNI CAGNNNCTG 2 cut(s) 265, 375
PvuII CAGCTG 1 cut(s) 375
RsaI GTAC 4 cut(s) 29, 281, 323, 422
RsaNI GTAC 4 cut(s) 28, 280, 322, 421
SaqAI TTAA 3 cut(s) 147, 825, 1083
SatI GCNGC 2 cut(s) 373, 395
Sau3AI GATC 3 cut(s) 46, 406, 439
Sau96I GGNCC 2 cut(s) 71, 355
ScaI AGTACT 1 cut(s) 281
SfaNI GCATC 1 cut(s) 505
SfuI TTCGAA 1 cut(s) 567
SinI GGWCC 2 cut(s) 71, 355
SmlI CTYRAG 1 cut(s) 653
SmoI CTYRAG 1 cut(s) 653
Sse9I AATT 4 cut(s) 76, 124, 453, 484
SsiI CCGC 1 cut(s) 395
SspI AATATT 1 cut(s) 675
SspMI CTAG 2 cut(s) 179, 572
TaaI ACNGT 1 cut(s) 624
TaiI ACGT 1 cut(s) 403
TaqI TCGA 2 cut(s) 567, 626
TasI AATT 4 cut(s) 76, 124, 453, 484
TatI WGTACW 2 cut(s) 27, 279
TauI GCSGC 1 cut(s) 397
Tru1I TTAA 3 cut(s) 147, 825, 1083
Tru9I TTAA 3 cut(s) 147, 825, 1083
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 1 cut(s) 372
Tsp45I GTSAC 1 cut(s) 7
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 71, 355
XagI CCTNNNNNAGG 1 cut(s) 66
XapI RAATTY 2 cut(s) 76, 124
XbaI TCTAGA 1 cut(s) 178
XcmI CCANNNNNNNNNTGG 1 cut(s) 519
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 2 cut(s) 179, 572
ZrmI AGTACT 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.