AT1G13490

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002710
Physical Location & Seq
Reverse (-)
4624564 .. 4626166
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13490.2

Sequence Viewer

Length: 1092 bp
ATGTATGTAACAAAGCGTTTGTCTGAATATCAGAAAAACCCATCGGAGCTAACATCGCTTCCGACAGAAGGTCCAAACTCCGGAGTATTGGTGATTCAAGACGAAGAATCACGGACTCCATGCTGCTTTGGAAAATGCTTTGATTGGAAACTCCATGGTTTGCCGTTTCCTCAGAACACAAAAGTCACCGTCAGATTCCAAGTGGGAAAGGTTGTCTATCTTGACCCGGTCGCTTTCATCCCCGTTCTTCATCAGCCACTTTCCTCCAATCTTTACTACGTTATAAGACAAAGCGGGAAACAAACTGGTTTTATCCCTGATGCTGATCCAAGGCCTCTGGATCCTTTTGACATATACCAACAATTTGAGATCCATCAAAGAGGATCATCAAACCAGAAGTTTTTTGCTACATCTGTTGCTTCAGAAGGGATACCACCTCAGTTCCTGACGAGAAAAGGTTGGGTGGCTGCTTCCTTGCCTTTCGAAGAATATGGTTTGATTGATGATGCAAAGGGTGTAGTTGATGCAAAGCTTCGCTATGAGCTTCCTGATTTAGATAAGAGCGTTGTAGTTGGGAAATGGTATGTTCCGTTCTTGTTTGTTAAGGAAGGTGGTGATGCAAACGATCAGATGAATAAATCAATGTATTATAGTATGACGCTTCAGCAAAGATTTGAAGAGGTTTTCTTCTGTGAAAACATTGGCAACAATAAACATTTTGAGGTTGTAGTTGATGTGGAGGTAGAAACAGAAGTGGTTAAGCTTGAAGGAGACAAGATTGCAAGAGAGACAAAAGGTGTGAACTCAGATGGAGTTGTGTGGTTTAGTGTCTCAGGGACTCAGAAGATTGGTCTTGGGTCTGTGGTCTTGGAGAGGATGAAATGGGAAGAGGAGAGGTTTGGATGGTCAAAGAAAGATGAACTAAGGTCTAGCATTAAGAGAACTGAGAAATTTGAAGGTGGTGGACCACATTGGAAGAGTTATAGATGCTATGTACTGGTAGAGACCTTTGAACTGAAGAGAACTGATGGGAGTTTGGTATTGACATATGAGTTTAAACATGTTGATAAGTTGAAGAGCAAGTGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

363

Amino Acids

41.61

Weight (kDa)

5.99

Isoelectric Point (pI)

33.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 119 1.9e-37 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AccIII TCCGGA 1 cut(s) 80
AciI CCGC 1 cut(s) 294
AclWI GGATC 5 cut(s) 320, 335, 348, 364, 391
AcsI RAATTY 1 cut(s) 950
AcuI CTGAAG 3 cut(s) 405, 647, 1037
AfaI GTAC 1 cut(s) 996
AfiI CCNNNNNNNGG 2 cut(s) 68, 80
AflIII ACRYGT 1 cut(s) 1060
AgsI TTSAA 6 cut(s) 98, 677, 767, 956, 1013, 1075
AhdI GACNNNNNGTC 1 cut(s) 69
AluBI AGCT 4 cut(s) 49, 532, 544, 763
AluI AGCT 4 cut(s) 49, 532, 544, 763
Alw26I GTCTC 4 cut(s) 765, 782, 835, 998
AlwI GGATC 5 cut(s) 320, 335, 348, 364, 391
AlwNI CAGNNNCTG 1 cut(s) 445
Aor13HI TCCGGA 1 cut(s) 80
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 2 cut(s) 123, 467
ApoI RAATTY 1 cut(s) 950
ArsI GACNNNNNNTTYG 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 71, 965
AsuC2I CCSGG 1 cut(s) 227
AsuHPI GGTGA 3 cut(s) 103, 178, 626
AsuII TTCGAA 1 cut(s) 483
AvaII GGWCC 2 cut(s) 71, 965
BamHI GGATCC 1 cut(s) 340
BbvI GCAGC 2 cut(s) 110, 454
BccI CCATC 5 cut(s) 49, 381, 803, 897, 1022
BceAI ACGGC 1 cut(s) 148
BciVI GTATCC 1 cut(s) 423
BcnI CCSGG 1 cut(s) 227
BcoDI GTCTC 4 cut(s) 765, 782, 835, 998
BfaI CTAG 1 cut(s) 930
BfuI GTATCC 1 cut(s) 423
BisI GCNGC 2 cut(s) 124, 468
BlsI GCNGC 2 cut(s) 125, 469
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 2 cut(s) 71, 965
BmeRI GACNNNNNGTC 1 cut(s) 69
BmgT120I GGNCC 2 cut(s) 71, 965
BmiI GGNNCC 1 cut(s) 342
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 5 cut(s) 310, 496, 514, 607, 977
Bpu14I TTCGAA 1 cut(s) 483
BpuMI CCSGG 1 cut(s) 227
BsaBI GATNNNNATC 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 998
BsaJI CCNNGG 2 cut(s) 154, 329
BsaWI WCCGGW 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 80
Bse1I ACTGG 2 cut(s) 310, 1002
Bse8I GATNNNNATC 1 cut(s) 324
BseAI TCCGGA 1 cut(s) 80
BseDI CCNNGG 2 cut(s) 154, 329
BseGI GGATG 3 cut(s) 237, 882, 908
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 68, 80
BseMII CTCAG 6 cut(s) 185, 452, 819, 846, 854, 936
BseNI ACTGG 2 cut(s) 310, 1002
BseRI GAGGAG 1 cut(s) 905
BseXI GCAGC 2 cut(s) 110, 454
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 1 cut(s) 334
BsiEI CGRYCG 1 cut(s) 231
BsiSI CCGG 2 cut(s) 81, 227
BslFI GGGAC 1 cut(s) 850
BslI CCNNNNNNNGG 2 cut(s) 68, 80
BsmAI GTCTC 4 cut(s) 765, 782, 835, 998
BsmFI GGGAC 1 cut(s) 850
BsnI GGCC 1 cut(s) 334
Bso31I GGTCTC 1 cut(s) 998
Bsp119I TTCGAA 1 cut(s) 483
Bsp13I TCCGGA 1 cut(s) 80
Bsp143I GATC 5 cut(s) 325, 340, 369, 383, 625
Bsp19I CCATGG 1 cut(s) 154
BspACI CCGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 6 cut(s) 184, 451, 818, 845, 853, 937
BspEI TCCGGA 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 342
BspPI GGATC 5 cut(s) 320, 335, 348, 364, 391
BspQI GCTCTTC 1 cut(s) 1070
BspT104I TTCGAA 1 cut(s) 483
BspTNI GGTCTC 1 cut(s) 998
BsrI ACTGG 2 cut(s) 310, 1002
BssECI CCNNGG 2 cut(s) 154, 329
BssMI GATC 5 cut(s) 325, 340, 369, 383, 625
BssT1I CCWWGG 2 cut(s) 154, 329
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 5 cut(s) 672, 882, 971, 1013, 1070
BstBI TTCGAA 1 cut(s) 483
BstDEI CTNAG 7 cut(s) 171, 438, 805, 832, 840, 923, 945
BstDSI CCRYGG 1 cut(s) 154
BstF5I GGATG 3 cut(s) 237, 882, 908
BstKTI GATC 5 cut(s) 328, 343, 372, 386, 628
BstMAI GTCTC 4 cut(s) 765, 782, 835, 998
BstMBI GATC 5 cut(s) 325, 340, 369, 383, 625
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstNSI RCATGY 1 cut(s) 1064
BstSCI CCNGG 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 110, 454
BstX2I RGATCY 2 cut(s) 340, 369
BstYI RGATCY 2 cut(s) 340, 369
BsuI GTATCC 1 cut(s) 423
BsuRI GGCC 1 cut(s) 334
BtgI CCRYGG 1 cut(s) 154
BtgZI GCGATG 1 cut(s) 39
BtsCI GGATG 3 cut(s) 237, 882, 908
CaiI CAGNNNCTG 1 cut(s) 445
Cfr13I GGNCC 2 cut(s) 71, 965
CseI GACGC 1 cut(s) 667
Csp6I GTAC 1 cut(s) 995
CviAII CATG 3 cut(s) 120, 155, 1061
CviJI RGCY 7 cut(s) 49, 256, 334, 467, 532, 544, 763
CviKI_1 RGCY 7 cut(s) 49, 256, 334, 467, 532, 544, 763
CviQI GTAC 1 cut(s) 995
DdeI CTNAG 7 cut(s) 171, 438, 805, 832, 840, 923, 945
DpnI GATC 5 cut(s) 327, 342, 371, 385, 627
DpnII GATC 5 cut(s) 325, 340, 369, 383, 625
DraI TTTAAA 1 cut(s) 1057
DriI GACNNNNNGTC 1 cut(s) 69
Eam1104I CTCTTC 5 cut(s) 672, 882, 971, 1013, 1070
Eam1105I GACNNNNNGTC 1 cut(s) 69
EarI CTCTTC 5 cut(s) 672, 882, 971, 1013, 1070
Eco130I CCWWGG 2 cut(s) 154, 329
Eco147I AGGCCT 1 cut(s) 334
Eco31I GGTCTC 1 cut(s) 998
Eco47I GGWCC 2 cut(s) 71, 965
Eco57I CTGAAG 3 cut(s) 405, 647, 1037
EcoT14I CCWWGG 2 cut(s) 154, 329
ErhI CCWWGG 2 cut(s) 154, 329
FaeI CATG 3 cut(s) 123, 158, 1064
FaqI GGGAC 1 cut(s) 850
FatI CATG 3 cut(s) 119, 154, 1060
FauI CCCGC 1 cut(s) 287
FauNDI CATATG 1 cut(s) 1048
Fnu4HI GCNGC 2 cut(s) 124, 468
FokI GGATG 3 cut(s) 224, 889, 915
Fsp4HI GCNGC 2 cut(s) 124, 468
FspBI CTAG 1 cut(s) 930
GluI GCNGC 2 cut(s) 124, 468
HaeIII GGCC 1 cut(s) 334
HapII CCGG 2 cut(s) 81, 227
HgaI GACGC 1 cut(s) 667
Hin1II CATG 3 cut(s) 123, 158, 1064
HindIII AAGCTT 2 cut(s) 530, 761
HinfI GANTC 5 cut(s) 94, 107, 115, 195, 838
HpaII CCGG 2 cut(s) 81, 227
HphI GGTGA 3 cut(s) 103, 178, 626
Hpy166II GTNNAC 2 cut(s) 802, 965
Hpy188III TCNNGA 6 cut(s) 81, 98, 221, 338, 445, 548
Hpy8I GTNNAC 2 cut(s) 802, 965
HpyAV CCTTC 5 cut(s) 62, 419, 602, 761, 950
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 4 cut(s) 509, 527, 620, 782
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HpyF3I CTNAG 7 cut(s) 171, 438, 805, 832, 840, 923, 945
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 3 cut(s) 123, 158, 1064
Kpn2I TCCGGA 1 cut(s) 80
Kzo9I GATC 5 cut(s) 325, 340, 369, 383, 625
LguI GCTCTTC 1 cut(s) 1070
LmnI GCTCC 1 cut(s) 46
Lsp1109I GCAGC 2 cut(s) 110, 454
LweI GCATC 5 cut(s) 310, 496, 514, 607, 977
MaeI CTAG 1 cut(s) 930
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 2 cut(s) 7, 184
MalI GATC 5 cut(s) 327, 342, 371, 385, 627
MboI GATC 5 cut(s) 325, 340, 369, 383, 625
MflI RGATCY 2 cut(s) 340, 369
MluCI AATT 2 cut(s) 362, 950
MlyI GAGTC 2 cut(s) 109, 832
MmeI TCCRAC 1 cut(s) 86
MroI TCCGGA 1 cut(s) 80
MseI TTAA 4 cut(s) 603, 759, 936, 1056
MspI CCGG 2 cut(s) 81, 227
MspR9I CCNGG 1 cut(s) 227
MssI GTTTAAAC 1 cut(s) 1057
MwoI GCNNNNNNNGC 1 cut(s) 55
NciI CCSGG 1 cut(s) 227
NcoI CCATGG 1 cut(s) 154
NdeI CATATG 1 cut(s) 1048
NdeII GATC 5 cut(s) 325, 340, 369, 383, 625
NlaIII CATG 3 cut(s) 123, 158, 1064
NlaIV GGNNCC 1 cut(s) 342
NmuCI GTSAC 1 cut(s) 184
NspI RCATGY 1 cut(s) 1064
NspV TTCGAA 1 cut(s) 483
PceI AGGCCT 1 cut(s) 334
PciI ACATGT 1 cut(s) 1060
PciSI GCTCTTC 1 cut(s) 1070
PfeI GAWTC 3 cut(s) 94, 107, 195
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 2 cut(s) 125, 469
PleI GAGTC 2 cut(s) 109, 832
PmeI GTTTAAAC 1 cut(s) 1057
PpsI GAGTC 2 cut(s) 109, 832
PscI ACATGT 1 cut(s) 1060
PsiI TTATAA 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 2 cut(s) 71, 965
PsrI GAACNNNNNNTAC 2 cut(s) 575, 607
PstNI CAGNNNCTG 1 cut(s) 445
PsuI RGATCY 2 cut(s) 340, 369
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 1 cut(s) 996
RsaNI GTAC 1 cut(s) 995
SapI GCTCTTC 1 cut(s) 1070
SaqAI TTAA 4 cut(s) 603, 759, 936, 1056
SatI GCNGC 2 cut(s) 124, 468
Sau3AI GATC 5 cut(s) 325, 340, 369, 383, 625
Sau96I GGNCC 2 cut(s) 71, 965
SchI GAGTC 2 cut(s) 109, 832
ScrFI CCNGG 1 cut(s) 227
SfaNI GCATC 5 cut(s) 310, 496, 514, 607, 977
SfuI TTCGAA 1 cut(s) 483
SinI GGWCC 2 cut(s) 71, 965
Sse9I AATT 2 cut(s) 362, 950
SseBI AGGCCT 1 cut(s) 334
SsiI CCGC 1 cut(s) 294
SspMI CTAG 1 cut(s) 930
StuI AGGCCT 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 225
StyI CCWWGG 2 cut(s) 154, 329
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 483
TasI AATT 2 cut(s) 362, 950
TatI WGTACW 1 cut(s) 994
TfiI GAWTC 3 cut(s) 94, 107, 195
Tru1I TTAA 4 cut(s) 603, 759, 936, 1056
Tru9I TTAA 4 cut(s) 603, 759, 936, 1056
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 123, 467
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 5 cut(s) 226, 239, 647, 893, 933
TspGWI ACGGA 2 cut(s) 127, 579
Tth111I GACNNNGTC 1 cut(s) 227
VpaK11BI GGWCC 2 cut(s) 71, 965
XapI RAATTY 1 cut(s) 950
XceI RCATGY 1 cut(s) 1064
XspI CTAG 1 cut(s) 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.