Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003130.1

Orthogroup ID

OG0002710

Physical Location & Seq

Genomic Coordinates Reverse (-)

86006 .. 87304

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003130.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atgtatgtgacaagacctctctcagggtacaaaaagtctcctgctgatctttcattgccccctcctgaaggtccaaattctggcattcttgttatccaagatgaggaacccaagtgctgcatgaatttgttcaagagtgatatgattaaggacctgcctctccctcagaacagaagtctagagctttactatgcacaagggttttatccaatgagagaacttcattttttcaaagttctattcatcccagttctgaatcagcccctgtcttccaatcagtactacgcaatatatccatttgggaaggatagaggggaagggtacacaagctcaaaagaggatgaaacagacatggacccatgttgcttcagcagctgttctaatgatgtaaagccgcaacgttttgatcccaaaaacctgtaccagcaatatcagattgatcttcacagaaaacttgtgaacatttctggtgggtttgtggctaattctatggctacagatggttgtcccccagatgcattgtggagaagagggtggaaactcacttgctcaacggcacaggagttcgaactaggtgatgcaccaggcctagacactactctccgcgcccaacttcctggttttgatttcccattgaataatgtggttgtagggaagtggtattgtccattcatgtttgtcaaggaaggcacaccgaaaccgtcgagaacaatatactatgagatgacacttgagcaaagatgggaacaaatatttgtgaaggagcgtagtaaggaacatgatataggcaatgctgtgaatgtggatgttgttgtgcaaagtgaggtggttgcggttgtgcttggagggagggaaggtgtttgtgatgagaaacatgtggatgatgatggggtggtgtggtttaagagtgtcaacaatgtgggtgaagagagaagggtcggggtgagcttagcgattgttgagaggatgaagtgggagcaagaaagggttgggtgggttgggggagatgaaggcaaagtgagagtggagagagttgaggtatatggagggatgggtgagtggaagaagtttggttgttttgtattggttgagaggtttgtgttgaaaagaatgaatgggagcttgttagttagccatgagttcaagcacactcatcagattaagtgtaaatgggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

392

Amino Acids

44.83

Weight (kDa)

5.79

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13470 AT1G13480 AT1G13490 AT1G13490 AT1G13500 AT1G13510 AT1G13520 AT1G13530 AT1G13540 AT1G13550
fragaria_vesca	FvH4_4g28550 FvH4_4g28552 FvH4_4g28553
malus_domestica	MD13G1051700.v1.1 MD13G1051900.v1.1 MD13G1052000.v1.1 MD16G1057800.v1.1
prunus_persica	Prupe.1G300000_v2.0.a1 Prupe.1G300100_v2.0.a1
pyrus_communis	pycom13g04620 pycom16g05060
rosa_chinensis	RchiOBHm_Chr4g0436651 RchiOBHm_Chr4g0436661
rosa_multiflora	Rmu_sc0003130.1_g000017 Rmu_sc0003130.1_g000018
rosa_roxburghii	Rroxscaffold_5G00377730 Rroxscaffold_5G00377740
rosa_rugosa	Rorug04G0294900 Rorug04G0295000
rosa_samantha	Rh4AG349400 Rh4AG349500 Rh4BG358100 Rh4BG358200 Rh4CG372500 Rh4CG372600 Rh4DG352300 Rh4DG352400
rosa_wichuraiana	Rw4G030560 Rw4G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	162
AccB7I	CCANNNNNTGG	1 cut(s)	80
AccII	CGCG	1 cut(s)	606
AciI	CCGC	3 cut(s)	395, 604, 833
AclI	AACGTT	1 cut(s)	400
AclWI	GGATC	1 cut(s)	401
AcsI	RAATTY	2 cut(s)	76, 124
AcuI	CTGAAG	2 cut(s)	87, 352
AfaI	GTAC	4 cut(s)	29, 281, 323, 422
AfiI	CCNNNNNNNGG	4 cut(s)	23, 68, 80, 103
AflIII	ACRYGT	1 cut(s)	874
AgsI	TTSAA	5 cut(s)	133, 232, 637, 1105, 1144
AjnI	CCWGG	2 cut(s)	583, 616
AluBI	AGCT	5 cut(s)	184, 330, 375, 948, 1122
AluI	AGCT	5 cut(s)	184, 330, 375, 948, 1122
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	401
AlwNI	CAGNNNCTG	2 cut(s)	265, 375
AoxI	GGCC	1 cut(s)	586
ApeKI	GCWGC	2 cut(s)	117, 372
ApoI	RAATTY	2 cut(s)	76, 124
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	608
AspS9I	GGNCC	3 cut(s)	71, 151, 355
AsuHPI	GGTGA	4 cut(s)	587, 935, 955, 1067
AsuII	TTCGAA	1 cut(s)	567
AvaII	GGWCC	3 cut(s)	71, 151, 355
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	104, 384
BccI	CCATC	4 cut(s)	494, 735, 881, 1045
BceAI	ACGGC	1 cut(s)	570
BciT130I	CCWGG	2 cut(s)	585, 618
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	3 cut(s)	179, 572, 590
BfmI	CTRYAG	1 cut(s)	495
BfuAI	ACCTGC	1 cut(s)	162
BisI	GCNGC	3 cut(s)	118, 373, 395
BlpI	GCTNAGC	1 cut(s)	949
BlsI	GCNGC	3 cut(s)	119, 374, 396
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	585, 618
Bme18I	GGWCC	3 cut(s)	71, 151, 355
BmgT120I	GGNCC	3 cut(s)	71, 151, 355
BmiI	GGNNCC	2 cut(s)	108, 357
BmrFI	CCNGG	2 cut(s)	585, 618
BmrI	ACTGGG	1 cut(s)	242
BmsI	GCATC	2 cut(s)	505, 568
BmuI	ACTGGG	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	261
Bpu1102I	GCTNAGC	1 cut(s)	949
Bpu14I	TTCGAA	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	752
BsaXI	ACNNNNNCTCC	2 cut(s)	841, 871
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 68, 80, 103
Bse1I	ACTGG	1 cut(s)	248
Bse3DI	GCAATG	2 cut(s)	53, 796
BseBI	CCWGG	2 cut(s)	585, 618
BseGI	GGATG	6 cut(s)	243, 346, 811, 886, 972, 1056
BseLI	CCNNNNNNNGG	4 cut(s)	23, 68, 80, 103
BseMI	GCAATG	2 cut(s)	53, 796
BseMII	CTCAG	2 cut(s)	36, 179
BseNI	ACTGG	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	104, 384
Bsh1236I	CGCG	1 cut(s)	606
BshFI	GGCC	1 cut(s)	588
BslFI	GGGAC	1 cut(s)	492
BslI	CCNNNNNNNGG	4 cut(s)	23, 68, 80, 103
BsmAI	GTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	492
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	588
Bsp119I	TTCGAA	1 cut(s)	567
Bsp143I	GATC	3 cut(s)	46, 406, 439
Bsp1720I	GCTNAGC	1 cut(s)	949
BspACI	CCGC	3 cut(s)	395, 604, 833
BspANI	GGCC	1 cut(s)	588
BspCNI	CTCAG	2 cut(s)	35, 178
BspFNI	CGCG	1 cut(s)	606
BspLI	GGNNCC	2 cut(s)	108, 357
BspMI	ACCTGC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	401
BspT104I	TTCGAA	1 cut(s)	567
BsrDI	GCAATG	2 cut(s)	53, 796
BsrI	ACTGG	1 cut(s)	248
BssMI	GATC	3 cut(s)	46, 406, 439
Bst2UI	CCWGG	2 cut(s)	585, 618
Bst4CI	ACNGT	1 cut(s)	702
Bst6I	CTCTTC	2 cut(s)	523, 921
BstBI	TTCGAA	1 cut(s)	567
BstDEI	CTNAG	3 cut(s)	22, 165, 949
BstENI	CCTNNNNNAGG	2 cut(s)	21, 66
BstF5I	GGATG	6 cut(s)	243, 346, 811, 886, 972, 1056
BstFNI	CGCG	1 cut(s)	606
BstHHI	GCGC	1 cut(s)	608
BstKTI	GATC	3 cut(s)	49, 409, 442
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	3 cut(s)	46, 406, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	372
BstNI	CCWGG	2 cut(s)	585, 618
BstNSI	RCATGY	1 cut(s)	878
BstSCI	CCNGG	2 cut(s)	583, 616
BstSFI	CTRYAG	1 cut(s)	495
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	2 cut(s)	104, 384
BstV2I	GAAGAC	1 cut(s)	261
BstXI	CCANNNNNNTGG	1 cut(s)	617
BsuRI	GGCC	1 cut(s)	588
BtsCI	GGATG	6 cut(s)	243, 346, 811, 886, 972, 1056
BveI	ACCTGC	1 cut(s)	162
CaiI	CAGNNNCTG	2 cut(s)	265, 375
CfoI	GCGC	1 cut(s)	608
Cfr13I	GGNCC	3 cut(s)	71, 151, 355
Csp6I	GTAC	4 cut(s)	28, 280, 322, 421
CviAII	CATG	7 cut(s)	121, 352, 360, 673, 779, 875, 1136
CviQI	GTAC	4 cut(s)	28, 280, 322, 421
DdeI	CTNAG	3 cut(s)	22, 165, 949
DpnI	GATC	3 cut(s)	48, 408, 441
DpnII	GATC	3 cut(s)	46, 406, 439
Eam1104I	CTCTTC	2 cut(s)	523, 921
EarI	CTCTTC	2 cut(s)	523, 921
Eco147I	AGGCCT	1 cut(s)	588
Eco47I	GGWCC	3 cut(s)	71, 151, 355
Eco57I	CTGAAG	2 cut(s)	87, 352
EcoNI	CCTNNNNNAGG	2 cut(s)	21, 66
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	2 cut(s)	583, 616
EcoT22I	ATGCAT	1 cut(s)	520
FaeI	CATG	7 cut(s)	124, 355, 363, 676, 782, 878, 1139
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	7 cut(s)	120, 351, 359, 672, 778, 874, 1135
Fnu4HI	GCNGC	3 cut(s)	118, 373, 395
FokI	GGATG	6 cut(s)	230, 353, 818, 893, 979, 1063
Fsp4HI	GCNGC	3 cut(s)	118, 373, 395
FspBI	CTAG	3 cut(s)	179, 572, 590
GlaI	GCGC	1 cut(s)	607
GluI	GCNGC	3 cut(s)	118, 373, 395
HaeIII	GGCC	1 cut(s)	588
HhaI	GCGC	1 cut(s)	608
Hin1II	CATG	7 cut(s)	124, 355, 363, 676, 782, 878, 1139
Hin6I	GCGC	1 cut(s)	606
HinP1I	GCGC	1 cut(s)	606
HincII	GTYRAC	1 cut(s)	913
HindII	GTYRAC	1 cut(s)	913
HinfI	GANTC	1 cut(s)	256
HphI	GGTGA	4 cut(s)	587, 935, 955, 1067
Hpy166II	GTNNAC	3 cut(s)	324, 460, 913
Hpy188I	TCNGA	4 cut(s)	168, 255, 435, 1158
Hpy188III	TCNNGA	4 cut(s)	65, 133, 179, 705
Hpy8I	GTNNAC	3 cut(s)	324, 460, 913
Hpy99I	CGWCG	1 cut(s)	706
HpyAV	CCTTC	8 cut(s)	62, 298, 311, 680, 754, 848, 927, 1004
HpyCH4III	ACNGT	1 cut(s)	702
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	5 cut(s)	120, 194, 518, 581, 817
HpyF10VI	GCNNNNNNNGC	1 cut(s)	372
HpyF3I	CTNAG	3 cut(s)	22, 165, 949
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	7 cut(s)	124, 355, 363, 676, 782, 878, 1139
HspAI	GCGC	1 cut(s)	606
Kzo9I	GATC	3 cut(s)	46, 406, 439
LmnI	GCTCC	3 cut(s)	763, 976, 1119
Lsp1109I	GCAGC	2 cut(s)	104, 384
LweI	GCATC	2 cut(s)	505, 568
MaeI	CTAG	3 cut(s)	179, 572, 590
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	3 cut(s)	48, 408, 441
MboI	GATC	3 cut(s)	46, 406, 439
MboII	GAAGA	5 cut(s)	261, 434, 540, 938, 1075
MluCI	AATT	3 cut(s)	76, 124, 484
Mph1103I	ATGCAT	1 cut(s)	520
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	3 cut(s)	147, 903, 1161
MslI	CAYNNNNRTG	1 cut(s)	879
MspA1I	CMGCKG	1 cut(s)	375
MspR9I	CCNGG	2 cut(s)	585, 618
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	2 cut(s)	585, 618
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	1 cut(s)	372
NdeII	GATC	3 cut(s)	46, 406, 439
NlaIII	CATG	7 cut(s)	124, 355, 363, 676, 782, 878, 1139
NlaIV	GGNNCC	2 cut(s)	108, 357
NmuCI	GTSAC	1 cut(s)	7
NsiI	ATGCAT	1 cut(s)	520
NspI	RCATGY	1 cut(s)	878
NspV	TTCGAA	1 cut(s)	567
PceI	AGGCCT	1 cut(s)	588
PciI	ACATGT	1 cut(s)	874
PctI	GAATGC	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	256
PflMI	CCANNNNNTGG	1 cut(s)	80
PkrI	GCNGC	3 cut(s)	119, 374, 396
PpuMI	RGGWCCY	1 cut(s)	151
PscI	ACATGT	1 cut(s)	874
Psp1406I	AACGTT	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	583, 616
PspGI	CCWGG	2 cut(s)	583, 616
PspN4I	GGNNCC	2 cut(s)	108, 357
PspPI	GGNCC	3 cut(s)	71, 151, 355
PspPPI	RGGWCCY	1 cut(s)	151
PstNI	CAGNNNCTG	2 cut(s)	265, 375
PvuII	CAGCTG	1 cut(s)	375
RsaI	GTAC	4 cut(s)	29, 281, 323, 422
RsaNI	GTAC	4 cut(s)	28, 280, 322, 421
RseI	CAYNNNNRTG	1 cut(s)	879
SaqAI	TTAA	3 cut(s)	147, 903, 1161
SatI	GCNGC	3 cut(s)	118, 373, 395
Sau3AI	GATC	3 cut(s)	46, 406, 439
Sau96I	GGNCC	3 cut(s)	71, 151, 355
ScaI	AGTACT	1 cut(s)	281
ScrFI	CCNGG	2 cut(s)	585, 618
SfaNI	GCATC	2 cut(s)	505, 568
SfcI	CTRYAG	1 cut(s)	495
SfuI	TTCGAA	1 cut(s)	567
SinI	GGWCC	3 cut(s)	71, 151, 355
SmiMI	CAYNNNNRTG	1 cut(s)	879
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
Sse9I	AATT	3 cut(s)	76, 124, 484
SseBI	AGGCCT	1 cut(s)	588
SsiI	CCGC	3 cut(s)	395, 604, 833
SspI	AATATT	1 cut(s)	753
SspMI	CTAG	3 cut(s)	179, 572, 590
StuI	AGGCCT	1 cut(s)	588
StyD4I	CCNGG	2 cut(s)	583, 616
TaaI	ACNGT	1 cut(s)	702
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	2 cut(s)	567, 704
TasI	AATT	3 cut(s)	76, 124, 484
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	3 cut(s)	147, 903, 1161
Tru9I	TTAA	3 cut(s)	147, 903, 1161
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	2 cut(s)	117, 372
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	9 cut(s)	42, 137, 212, 232, 357, 661, 983, 1023, 1127
Van91I	CCANNNNNTGG	1 cut(s)	80
VpaK11BI	GGWCC	3 cut(s)	71, 151, 355
XagI	CCTNNNNNAGG	2 cut(s)	21, 66
XapI	RAATTY	2 cut(s)	76, 124
XbaI	TCTAGA	1 cut(s)	178
XceI	RCATGY	1 cut(s)	878
XcmI	CCANNNNNNNNNTGG	1 cut(s)	519
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	3 cut(s)	179, 572, 590
ZrmI	AGTACT	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.