RchiOBHm_Chr4g0436651

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002710
Physical Location & Seq
Reverse (-)
59910650 .. 59912208
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40497

Sequence Viewer

Length: 1197 bp
ATGTATGTGACAAGGCCTCTTTCTATGTACCAGAAGCAACCTTCCATGCTCTCTTTGCCACCTCCAGAGGGTCCAAATTCCGGTATTTTGGTCATACAAGATGAAGAATCAGAGCCTACAATTTGCTTTGGCTTGTTTAAAGGCCACGAGCTCAAGGACCTTCCTTTCCCTCAGAACAAGAATCTGAAGCTTCGTTATTCCACAAGCAATGGAGAGCAAACATCCGTTTCTTATTTCTACACTGCCTTCATTCCAGTCCTTAACCAGCCTCCGGCATCCAATTGTTATTATGCAATTTCGTCCCGCGGGAAGCATAAAGGACAAGCATACACCAGTTCAACAGAGGAGGACTTGGGAACCTGCTGCTTCTGCACTTACGTCCGAGATGTACCACCGCAACCCTTAAATCCTAATAACACATGGCAGCAATTTCAGGTCCAACGCAAAGGCAGATTTAACCAATGTGGTGGTTTTGTTGCCAAAGCTATAGCTTCGGATGGGTTTCCTCCAAAGTTTCTTGGAAGAAAAGGCTGGGAGATATATACCTCAACTCCACGTGACTTCCATTTAGATGAAGCACCAGGTCTAGACTCTGCACTACGTGCTCGCCTTCCGGATTTCAACTTTGAAGTATCGAATGCAAGCTCGAATCCTGTGGTTGTGGGGAAGTGGTATTGTCCCTTCATGTTTGTTAAGGAAGGATCACTAACACCGAAAGATCAAATGAGTAGCACAAGGTATTATGAGATGACACTCGAGCAAAGATGGGAGCAAATATTTGCACGTGACAGTGATGCAAATGAGGAAAATAATGTTGTGGTTGTTGATGTTTCTGTCGAAAATGAATTTGTTACTGTTGCTGGAAATTATGTGGAAGCTGTGCATGAGGAGAGGGATATGGCTAATGGGGTAATCTGGTATAGGGGTTTTAACAAAGTAGGAGGAGAGAGCATTGTAGGGGTGAGCTTAGCAATTTTAGAGAGGGTGAAGTGGGAGCAACAAAGGTTTGGATGGAATGGAGGGAATGAGAGGAAGGTGAGAGTGAAGAAAGTAGAGGAGTTTGGGGGTACGGGAAGGTGGAAGAAATTTGGTTGCTATGTGTTGGTTGAGAGGTTTGTACTGAAAAGAATGGATGGAAGCTTGGTACTGACTTATGGTTTCAGACACACTCATCAGATTAGGAGCAAATGGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

398

Amino Acids

45.38

Weight (kDa)

8.29

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 123 5.8e-38 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 368
AccII CGCG 1 cut(s) 306
AccIII TCCGGA 1 cut(s) 613
AciI CCGC 3 cut(s) 304, 306, 395
AclWI GGATC 1 cut(s) 709
AcsI RAATTY 3 cut(s) 76, 845, 1085
AcuI CTGAAG 1 cut(s) 206
AcvI CACGTG 2 cut(s) 557, 785
AdeI CACNNNGTG 1 cut(s) 602
AfaI GTAC 5 cut(s) 29, 390, 1069, 1119, 1146
AfiI CCNNNNNNNGG 3 cut(s) 68, 80, 271
AgsI TTSAA 3 cut(s) 339, 622, 629
AjnI CCWGG 1 cut(s) 580
AluBI AGCT 8 cut(s) 151, 190, 485, 491, 645, 878, 966, 1140
AluI AGCT 8 cut(s) 151, 190, 485, 491, 645, 878, 966, 1140
Alw21I GWGCWC 2 cut(s) 153, 607
AlwI GGATC 1 cut(s) 709
Ama87I CYCGRG 1 cut(s) 755
Aor13HI TCCGGA 1 cut(s) 613
AoxI GGCC 2 cut(s) 14, 142
ApeKI GCWGC 2 cut(s) 363, 424
ApoI RAATTY 3 cut(s) 76, 845, 1085
AspS9I GGNCC 3 cut(s) 71, 157, 436
AsuHPI GGTGA 3 cut(s) 973, 997, 1048
AvaI CYCGRG 1 cut(s) 755
AvaII GGWCC 3 cut(s) 71, 157, 436
BanII GRGCYC 1 cut(s) 153
BarI GAAGNNNNNNTAC 2 cut(s) 665, 697
BauI CACGAG 1 cut(s) 146
BbrPI CACGTG 2 cut(s) 557, 785
Bbv12I GWGCWC 2 cut(s) 153, 607
BbvI GCAGC 2 cut(s) 350, 436
BccI CCATC 4 cut(s) 491, 759, 1005, 1127
BciT130I CCWGG 1 cut(s) 582
BfaI CTAG 1 cut(s) 587
BfmI CTRYAG 1 cut(s) 486
BfuAI ACCTGC 1 cut(s) 368
BisI GCNGC 2 cut(s) 364, 425
BlpI GCTNAGC 1 cut(s) 967
BlsI GCNGC 2 cut(s) 365, 426
Bme1390I CCNGG 1 cut(s) 582
Bme18I GGWCC 3 cut(s) 71, 157, 436
BmeT110I CYCGRG 1 cut(s) 755
BmgT120I GGNCC 3 cut(s) 71, 157, 436
BmiI GGNNCC 2 cut(s) 72, 358
BmrFI CCNGG 1 cut(s) 582
BmsI GCATC 2 cut(s) 284, 784
BpmI CTGGAG 1 cut(s) 48
Bpu1102I GCTNAGC 1 cut(s) 967
BpuEI CTTGAG 1 cut(s) 137
BsaAI YACGTR 3 cut(s) 557, 602, 785
BsaJI CCNNGG 1 cut(s) 304
BsaWI WCCGGW 2 cut(s) 80, 613
BsaXI ACNNNNNCTCC 2 cut(s) 535, 565
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 80, 271
Bse1I ACTGG 2 cut(s) 254, 333
Bse3DI GCAATG 1 cut(s) 214
BseAI TCCGGA 1 cut(s) 613
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 5 cut(s) 221, 275, 502, 1016, 1138
BseLI CCNNNNNNNGG 3 cut(s) 68, 80, 271
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 2 cut(s) 254, 333
BseRI GAGGAG 4 cut(s) 359, 902, 957, 1070
BseXI GCAGC 2 cut(s) 350, 436
BseYI CCCAGC 1 cut(s) 531
BsgI GTGCAG 2 cut(s) 355, 579
Bsh1236I CGCG 1 cut(s) 306
BshFI GGCC 2 cut(s) 16, 144
BsiHKAI GWGCWC 2 cut(s) 153, 607
BsiHKCI CYCGRG 1 cut(s) 755
BsiSI CCGG 3 cut(s) 81, 272, 614
BslFI GGGAC 2 cut(s) 286, 663
BslI CCNNNNNNNGG 3 cut(s) 68, 80, 271
BsmFI GGGAC 2 cut(s) 286, 663
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 2 cut(s) 16, 144
BsoBI CYCGRG 1 cut(s) 755
Bsp1286I GDGCHC 2 cut(s) 153, 607
Bsp13I TCCGGA 1 cut(s) 613
Bsp143I GATC 2 cut(s) 701, 718
Bsp1720I GCTNAGC 1 cut(s) 967
BspACI CCGC 3 cut(s) 304, 306, 395
BspANI GGCC 2 cut(s) 16, 144
BspCNI CTCAG 1 cut(s) 184
BspEI TCCGGA 1 cut(s) 613
BspFNI CGCG 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 72, 358
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 1 cut(s) 709
BsrDI GCAATG 1 cut(s) 214
BsrI ACTGG 2 cut(s) 254, 333
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 2 cut(s) 701, 718
BssSI CACGAG 1 cut(s) 146
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 2 cut(s) 791, 856
BstAPI GCANNNNNTGC 1 cut(s) 602
BstBAI YACGTR 3 cut(s) 557, 602, 785
BstC8I GCNNGC 2 cut(s) 607, 643
BstDEI CTNAG 2 cut(s) 171, 967
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 5 cut(s) 221, 275, 502, 1016, 1138
BstFNI CGCG 1 cut(s) 306
BstKTI GATC 2 cut(s) 704, 721
BstMBI GATC 2 cut(s) 701, 718
BstMWI GCNNNNNNNGC 3 cut(s) 55, 369, 602
BstNI CCWGG 1 cut(s) 582
BstSCI CCNGG 1 cut(s) 580
BstSFI CTRYAG 1 cut(s) 486
BstUI CGCG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 350, 436
BstXI CCANNNNNNTGG 1 cut(s) 467
BsuRI GGCC 2 cut(s) 16, 144
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 5 cut(s) 221, 275, 502, 1016, 1138
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 240, 796
BveI ACCTGC 1 cut(s) 368
Cac8I GCNNGC 2 cut(s) 607, 643
Cfr13I GGNCC 3 cut(s) 71, 157, 436
Cfr42I CCGCGG 1 cut(s) 307
CsiI ACCWGGT 1 cut(s) 580
Csp6I GTAC 5 cut(s) 28, 389, 1068, 1118, 1145
CviAII CATG 4 cut(s) 46, 420, 685, 884
CviQI GTAC 5 cut(s) 28, 389, 1068, 1118, 1145
DdeI CTNAG 2 cut(s) 171, 967
DpnI GATC 2 cut(s) 703, 720
DpnII GATC 2 cut(s) 701, 718
DraI TTTAAA 1 cut(s) 139
DraIII CACNNNGTG 1 cut(s) 602
Ecl136II GAGCTC 1 cut(s) 151
Eco147I AGGCCT 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 3 cut(s) 71, 157, 436
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 206
Eco72I CACGTG 2 cut(s) 557, 785
Eco88I CYCGRG 1 cut(s) 755
EcoICRI GAGCTC 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 580
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 4 cut(s) 49, 423, 688, 887
FaqI GGGAC 2 cut(s) 286, 663
FatI CATG 4 cut(s) 45, 419, 684, 883
FauI CCCGC 2 cut(s) 299, 311
Fnu4HI GCNGC 2 cut(s) 364, 425
FokI GGATG 5 cut(s) 208, 262, 509, 1023, 1145
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 364, 425
FspBI CTAG 1 cut(s) 587
GluI GCNGC 2 cut(s) 364, 425
GsaI CCCAGC 1 cut(s) 535
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 2 cut(s) 16, 144
HapII CCGG 3 cut(s) 81, 272, 614
Hin1II CATG 4 cut(s) 49, 423, 688, 887
HindIII AAGCTT 2 cut(s) 188, 1138
HinfI GANTC 4 cut(s) 107, 181, 590, 649
HpaII CCGG 3 cut(s) 81, 272, 614
HphI GGTGA 3 cut(s) 973, 997, 1048
Hpy188I TCNGA 7 cut(s) 112, 174, 186, 383, 496, 1163, 1176
Hpy188III TCNNGA 3 cut(s) 65, 587, 614
HpyAV CCTTC 8 cut(s) 51, 170, 256, 620, 691, 692, 1027, 1068
HpyCH4III ACNGT 2 cut(s) 791, 856
HpyCH4IV ACGT 4 cut(s) 378, 556, 601, 784
HpyCH4V TGCA 7 cut(s) 293, 372, 596, 641, 782, 797, 883
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 369, 602
HpyF3I CTNAG 2 cut(s) 171, 967
HpySE526I ACGT 4 cut(s) 378, 556, 601, 784
Hsp92II CATG 4 cut(s) 49, 423, 688, 887
Kpn2I TCCGGA 1 cut(s) 613
KspI CCGCGG 1 cut(s) 307
Kzo9I GATC 2 cut(s) 701, 718
LmnI GCTCC 3 cut(s) 769, 994, 1182
Lsp1109I GCAGC 2 cut(s) 350, 436
LweI GCATC 2 cut(s) 284, 784
MabI ACCWGGT 1 cut(s) 580
MaeI CTAG 1 cut(s) 587
MaeII ACGT 4 cut(s) 378, 556, 601, 784
MaeIII GTNAC 4 cut(s) 7, 557, 785, 850
MalI GATC 2 cut(s) 703, 720
MboI GATC 2 cut(s) 701, 718
MboII GAAGA 4 cut(s) 116, 534, 1057, 1093
MfeI CAATTG 1 cut(s) 280
MhlI GDGCHC 2 cut(s) 153, 607
MluCI AATT 9 cut(s) 76, 120, 280, 294, 428, 845, 865, 972, 1085
MlyI GAGTC 1 cut(s) 584
MmeI TCCRAC 1 cut(s) 463
MroI TCCGGA 1 cut(s) 613
MseI TTAA 6 cut(s) 138, 261, 404, 456, 693, 930
MslI CAYNNNNRTG 1 cut(s) 570
MspA1I CMGCKG 1 cut(s) 306
MspI CCGG 3 cut(s) 81, 272, 614
MspR9I CCNGG 1 cut(s) 582
MunI CAATTG 1 cut(s) 280
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 1 cut(s) 582
MvnI CGCG 1 cut(s) 306
MwoI GCNNNNNNNGC 3 cut(s) 55, 369, 602
NdeII GATC 2 cut(s) 701, 718
NlaIII CATG 4 cut(s) 49, 423, 688, 887
NlaIV GGNNCC 2 cut(s) 72, 358
NmuCI GTSAC 3 cut(s) 7, 557, 785
PaeR7I CTCGAG 1 cut(s) 755
PceI AGGCCT 1 cut(s) 16
PctI GAATGC 1 cut(s) 643
PfeI GAWTC 3 cut(s) 107, 181, 649
PkrI GCNGC 2 cut(s) 365, 426
PleI GAGTC 1 cut(s) 584
PmaCI CACGTG 2 cut(s) 557, 785
PmlI CACGTG 2 cut(s) 557, 785
PpsI GAGTC 1 cut(s) 584
Ppu21I YACGTR 3 cut(s) 557, 602, 785
PpuMI RGGWCCY 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 580
PspCI CACGTG 2 cut(s) 557, 785
PspFI CCCAGC 1 cut(s) 531
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 2 cut(s) 72, 358
PspPI GGNCC 3 cut(s) 71, 157, 436
PspPPI RGGWCCY 1 cut(s) 157
PspXI VCTCGAGB 1 cut(s) 755
RsaI GTAC 5 cut(s) 29, 390, 1069, 1119, 1146
RsaNI GTAC 5 cut(s) 28, 389, 1068, 1118, 1145
RseI CAYNNNNRTG 1 cut(s) 570
SacI GAGCTC 1 cut(s) 153
SacII CCGCGG 1 cut(s) 307
SaqAI TTAA 6 cut(s) 138, 261, 404, 456, 693, 930
SatI GCNGC 2 cut(s) 364, 425
Sau3AI GATC 2 cut(s) 701, 718
Sau96I GGNCC 3 cut(s) 71, 157, 436
SchI GAGTC 1 cut(s) 584
ScrFI CCNGG 1 cut(s) 582
SduI GDGCHC 2 cut(s) 153, 607
SexAI ACCWGGT 1 cut(s) 580
SfaNI GCATC 2 cut(s) 284, 784
SfcI CTRYAG 1 cut(s) 486
Sfr274I CTCGAG 1 cut(s) 755
Sfr303I CCGCGG 1 cut(s) 307
SgrBI CCGCGG 1 cut(s) 307
SinI GGWCC 3 cut(s) 71, 157, 436
SlaI CTCGAG 1 cut(s) 755
SmiMI CAYNNNNRTG 1 cut(s) 570
SmlI CTYRAG 2 cut(s) 152, 755
SmoI CTYRAG 2 cut(s) 152, 755
Sse9I AATT 9 cut(s) 76, 120, 280, 294, 428, 845, 865, 972, 1085
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 3 cut(s) 304, 306, 395
SspI AATATT 1 cut(s) 777
SspMI CTAG 1 cut(s) 587
SstI GAGCTC 1 cut(s) 153
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 1 cut(s) 580
TaaI ACNGT 2 cut(s) 791, 856
TaiI ACGT 4 cut(s) 381, 559, 604, 787
TaqI TCGA 4 cut(s) 635, 647, 756, 837
TasI AATT 9 cut(s) 76, 120, 280, 294, 428, 845, 865, 972, 1085
TatI WGTACW 1 cut(s) 1117
TfiI GAWTC 3 cut(s) 107, 181, 649
Tru1I TTAA 6 cut(s) 138, 261, 404, 456, 693, 930
Tru9I TTAA 6 cut(s) 138, 261, 404, 456, 693, 930
TscAI CASTG 2 cut(s) 247, 796
TseFI GTSAC 3 cut(s) 7, 557, 785
TseI GCWGC 2 cut(s) 363, 424
Tsp45I GTSAC 3 cut(s) 7, 557, 785
TspDTI ATGAA 5 cut(s) 117, 238, 588, 673, 858
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 2 cut(s) 247, 796
VpaK11BI GGWCC 3 cut(s) 71, 157, 436
XapI RAATTY 3 cut(s) 76, 845, 1085
XbaI TCTAGA 1 cut(s) 586
XhoI CTCGAG 1 cut(s) 755
XspI CTAG 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.