pycom13g04620

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0002710
Physical Location & Seq
Reverse (-)
3093168 .. 3094478
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g04620.1

Sequence Viewer

Length: 1167 bp
ATGTATGTCACAAGGCCTCTGTCGATGTACAAAAAGTCTCCTGAGGATCTCTCATTACCCCCGCCAGAGGGTCCGAACTCCGGCATCTTGGTCATCCAAGATGAAGAAGCAGAGCCTACATGTTGCTTTGGTCTATGCAAATCCCACAAGCTCCGTGACATGCCTTTACCTCAGAACAAGAATCTAGAGCTTCGTCATGTCACCCAAGTGGGACAAGTCCAACATGTTTCTCTTTTCTACACCGCCTTCATTCCGGTCCTTAACCAGCCTTTGGCTTCCAACCGTTACTACGCGATTCAGTCGCGTGGAAATCTTGAAGGGCAAGCCTACACATGTTCAACAGATGAGAACTTGGGAACCTGCTGCTTCTGCACTTATGTAAAGGATGTGCCGTCACAGCCGTTCAATCCCAATAACATTTACCAGCAATATGAGATCCAGCAGAAACGAAGTTGCAATCAATTTGGGGGTTTTGTTGCCAAATCCATAGCTTCAGATGGGTACCCTCCAAAATTTCTTGGAAGAAAAGGGTGGCAAATACACACCTCAACTCCCCGTGACTTCCATTTAGGTGAAGCACTGGGTCTAGACGCTAAGCTACGCGCCCGTCTTCCAGATTTCAACTTCCCATTATCACTCACAAGCTCGAATCCGGTGGTTGTAGGGAAGTGGTATTGCCCCTTCATGTTTGTTAAGGAGGGAACGCCTCAAGATCAAATGAGTAGGAGAAGGTTTTACGATATGACACTTGAGCAAAGATGGGAACAAATATTCGCATGTGACGGTAATTATAGCGAAGGCAACGCCGTGGTGGTTGATGTTTTTGTTCAAAACGAGTCTGTTGCTGTTGGCAGGAACGCGGAAGCTGTGCATGAGGAGATGGATGTGGTTAATGGGGTTATGTGGTATAGGGGTTTAGACAATGTTGGGGTGAGCTTACGAATTGTGGAGAGGATGAAATGGGAGCAACAAAGGTTTGGATGGTTTGGAGGGAACGAGAGGCAAGTGAGAGTGAAAAAAGTAGAGGAGTTTGGAGGGGTGGATAAGTGGAGAAAATTTGGTTGCTATGTTTTGGTGGAGAGGTTTGTGTTGAAAAGAATGGATGGAAGCTTGGTGCTAACTTACGATTTCAGACATACTCATCATATTAGGAGCAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

389

Amino Acids

44.66

Weight (kDa)

8.21

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 123 2.4e-36 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 368
Acc65I GGTACC 1 cut(s) 501
AccB1I GGYRCC 1 cut(s) 501
AccB7I CCANNNNNTGG 1 cut(s) 271
AccII CGCG 4 cut(s) 293, 304, 603, 860
AciI CCGC 3 cut(s) 62, 243, 860
AclWI GGATC 2 cut(s) 54, 430
AcsI RAATTY 2 cut(s) 512, 1055
AcuI CTGAAG 1 cut(s) 477
AfaI GTAC 2 cut(s) 29, 503
AfiI CCNNNNNNNGG 4 cut(s) 67, 68, 80, 271
AflIII ACRYGT 3 cut(s) 119, 223, 332
AgsI TTSAA 6 cut(s) 317, 339, 406, 622, 830, 1093
AleI CACNNNNGTG 1 cut(s) 206
AluBI AGCT 8 cut(s) 151, 190, 491, 598, 645, 866, 936, 1110
AluI AGCT 8 cut(s) 151, 190, 491, 598, 645, 866, 936, 1110
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 2 cut(s) 54, 430
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 363
ApoI RAATTY 2 cut(s) 512, 1055
Asp718I GGTACC 1 cut(s) 501
AspLEI GCGC 1 cut(s) 605
AspS9I GGNCC 2 cut(s) 71, 256
AsuHPI GGTGA 3 cut(s) 193, 584, 943
AvaII GGWCC 2 cut(s) 71, 256
AxyI CCTNAGG 1 cut(s) 42
BanI GGYRCC 1 cut(s) 501
BarI GAAGNNNNNNTAC 2 cut(s) 665, 697
BbsI GAAGAC 1 cut(s) 602
BbvI GCAGC 1 cut(s) 350
BccI CCATC 5 cut(s) 491, 753, 874, 975, 1097
BceAI ACGGC 3 cut(s) 376, 385, 791
BcgI CGANNNNNNTGC 2 cut(s) 824, 858
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 2 cut(s) 185, 587
BfuAI ACCTGC 1 cut(s) 368
BisI GCNGC 1 cut(s) 364
BlpI GCTNAGC 1 cut(s) 594
BlsI GCNGC 1 cut(s) 365
Bme18I GGWCC 2 cut(s) 71, 256
BmgT120I GGNCC 2 cut(s) 71, 256
BmiI GGNNCC 3 cut(s) 72, 358, 503
BmrI ACTGGG 1 cut(s) 590
BmsI GCATC 1 cut(s) 93
BmuI ACTGGG 1 cut(s) 590
BpiI GAAGAC 1 cut(s) 602
BplI GAGNNNNNCTC 2 cut(s) 35, 67
Bpu1102I GCTNAGC 1 cut(s) 594
BpuEI CTTGAG 2 cut(s) 693, 770
BsaJI CCNNGG 1 cut(s) 807
BsaWI WCCGGW 2 cut(s) 253, 652
BsaXI ACNNNNNCTCC 2 cut(s) 535, 565
Bsc4I CCNNNNNNNGG 4 cut(s) 67, 68, 80, 271
Bse1I ACTGG 1 cut(s) 585
Bse21I CCTNAGG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 807
BseGI GGATG 6 cut(s) 93, 391, 889, 960, 986, 1108
BseLI CCNNNNNNNGG 4 cut(s) 67, 68, 80, 271
BseMII CTCAG 2 cut(s) 33, 185
BseNI ACTGG 1 cut(s) 585
BseRI GAGGAG 2 cut(s) 890, 1040
BseXI GCAGC 1 cut(s) 350
BsgI GTGCAG 1 cut(s) 355
Bsh1236I CGCG 4 cut(s) 293, 304, 603, 860
BshFI GGCC 1 cut(s) 16
BshNI GGYRCC 1 cut(s) 501
BsiSI CCGG 3 cut(s) 81, 254, 653
BslFI GGGAC 1 cut(s) 225
BslI CCNNNNNNNGG 4 cut(s) 67, 68, 80, 271
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 225
BsnI GGCC 1 cut(s) 16
Bsp1407I TGTACA 1 cut(s) 27
Bsp143I GATC 3 cut(s) 46, 435, 712
Bsp1720I GCTNAGC 1 cut(s) 594
BspACI CCGC 3 cut(s) 62, 243, 860
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 2 cut(s) 34, 184
BspFNI CGCG 4 cut(s) 293, 304, 603, 860
BspLI GGNNCC 3 cut(s) 72, 358, 503
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 2 cut(s) 54, 430
BspT107I GGYRCC 1 cut(s) 501
BsrGI TGTACA 1 cut(s) 27
BsrI ACTGG 1 cut(s) 585
BssECI CCNNGG 1 cut(s) 807
BssMI GATC 3 cut(s) 46, 435, 712
Bst4CI ACNGT 2 cut(s) 284, 785
BstAUI TGTACA 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 3 cut(s) 42, 171, 594
BstDSI CCRYGG 1 cut(s) 807
BstF5I GGATG 6 cut(s) 93, 391, 889, 960, 986, 1108
BstFNI CGCG 4 cut(s) 293, 304, 603, 860
BstHHI GCGC 1 cut(s) 605
BstKTI GATC 3 cut(s) 49, 438, 715
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 3 cut(s) 46, 435, 712
BstMWI GCNNNNNNNGC 2 cut(s) 369, 397
BstNSI RCATGY 5 cut(s) 123, 163, 227, 336, 780
BstUI CGCG 4 cut(s) 293, 304, 603, 860
BstV1I GCAGC 1 cut(s) 350
BstV2I GAAGAC 1 cut(s) 602
BstX2I RGATCY 2 cut(s) 46, 435
BstYI RGATCY 2 cut(s) 46, 435
Bsu36I CCTNAGG 1 cut(s) 42
BsuRI GGCC 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 807
BtsCI GGATG 6 cut(s) 93, 391, 889, 960, 986, 1108
BtsIMutI CAGTG 1 cut(s) 578
BveI ACCTGC 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 324
CfoI GCGC 1 cut(s) 605
Cfr13I GGNCC 2 cut(s) 71, 256
CseI GACGC 1 cut(s) 599
Csp6I GTAC 2 cut(s) 28, 502
CviAII CATG 8 cut(s) 120, 160, 197, 224, 333, 685, 777, 872
CviQI GTAC 2 cut(s) 28, 502
DdeI CTNAG 3 cut(s) 42, 171, 594
DpnI GATC 3 cut(s) 48, 437, 714
DpnII GATC 3 cut(s) 46, 435, 712
Eco147I AGGCCT 1 cut(s) 16
Eco47I GGWCC 2 cut(s) 71, 256
Eco57I CTGAAG 1 cut(s) 477
Eco81I CCTNAGG 1 cut(s) 42
FaeI CATG 8 cut(s) 123, 163, 200, 227, 336, 688, 780, 875
FaqI GGGAC 1 cut(s) 225
FatI CATG 8 cut(s) 119, 159, 196, 223, 332, 684, 776, 871
FauI CCCGC 1 cut(s) 69
Fnu4HI GCNGC 1 cut(s) 364
FokI GGATG 6 cut(s) 80, 398, 896, 967, 993, 1115
Fsp4HI GCNGC 1 cut(s) 364
FspBI CTAG 2 cut(s) 185, 587
GlaI GCGC 1 cut(s) 604
GluI GCNGC 1 cut(s) 364
HaeIII GGCC 1 cut(s) 16
HapII CCGG 3 cut(s) 81, 254, 653
HgaI GACGC 1 cut(s) 599
HhaI GCGC 1 cut(s) 605
Hin1II CATG 8 cut(s) 123, 163, 200, 227, 336, 688, 780, 875
Hin6I GCGC 1 cut(s) 603
HinP1I GCGC 1 cut(s) 603
HindIII AAGCTT 1 cut(s) 1108
HinfI GANTC 4 cut(s) 181, 295, 649, 836
HpaII CCGG 3 cut(s) 81, 254, 653
HphI GGTGA 3 cut(s) 193, 584, 943
Hpy188I TCNGA 4 cut(s) 75, 174, 496, 1133
Hpy188III TCNNGA 6 cut(s) 41, 185, 314, 587, 614, 710
HpyAV CCTTC 5 cut(s) 256, 311, 691, 723, 791
HpyCH4III ACNGT 2 cut(s) 284, 785
HpyCH4V TGCA 4 cut(s) 138, 372, 456, 871
HpyF10VI GCNNNNNNNGC 2 cut(s) 369, 397
HpyF3I CTNAG 3 cut(s) 42, 171, 594
Hsp92II CATG 8 cut(s) 123, 163, 200, 227, 336, 688, 780, 875
HspAI GCGC 1 cut(s) 603
KpnI GGTACC 1 cut(s) 505
Kzo9I GATC 3 cut(s) 46, 435, 712
LmnI GCTCC 3 cut(s) 156, 964, 1152
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 1 cut(s) 93
MaeI CTAG 2 cut(s) 185, 587
MaeIII GTNAC 7 cut(s) 7, 155, 199, 284, 393, 557, 779
MalI GATC 3 cut(s) 48, 437, 714
MboI GATC 3 cut(s) 46, 435, 712
MboII GAAGA 3 cut(s) 116, 534, 602
MflI RGATCY 2 cut(s) 46, 435
MluCI AATT 5 cut(s) 461, 512, 787, 942, 1055
MlyI GAGTC 1 cut(s) 845
MmeI TCCRAC 2 cut(s) 244, 303
MseI TTAA 3 cut(s) 261, 693, 891
MslI CAYNNNNRTG 2 cut(s) 206, 570
MspI CCGG 3 cut(s) 81, 254, 653
MvnI CGCG 4 cut(s) 293, 304, 603, 860
MwoI GCNNNNNNNGC 2 cut(s) 369, 397
NdeII GATC 3 cut(s) 46, 435, 712
NlaIII CATG 8 cut(s) 123, 163, 200, 227, 336, 688, 780, 875
NlaIV GGNNCC 3 cut(s) 72, 358, 503
NmuCI GTSAC 6 cut(s) 7, 155, 199, 393, 557, 779
NspI RCATGY 5 cut(s) 123, 163, 227, 336, 780
OliI CACNNNNGTG 1 cut(s) 206
PceI AGGCCT 1 cut(s) 16
PciI ACATGT 3 cut(s) 119, 223, 332
PfeI GAWTC 3 cut(s) 181, 295, 649
PflMI CCANNNNNTGG 1 cut(s) 271
PkrI GCNGC 1 cut(s) 365
PleI GAGTC 1 cut(s) 844
PpsI GAGTC 1 cut(s) 844
PscI ACATGT 3 cut(s) 119, 223, 332
PspN4I GGNNCC 3 cut(s) 72, 358, 503
PspPI GGNCC 2 cut(s) 71, 256
PsuI RGATCY 2 cut(s) 46, 435
RsaI GTAC 2 cut(s) 29, 503
RsaNI GTAC 2 cut(s) 28, 502
RseI CAYNNNNRTG 2 cut(s) 206, 570
SaqAI TTAA 3 cut(s) 261, 693, 891
SatI GCNGC 1 cut(s) 364
Sau3AI GATC 3 cut(s) 46, 435, 712
Sau96I GGNCC 2 cut(s) 71, 256
SchI GAGTC 1 cut(s) 845
SfaNI GCATC 1 cut(s) 93
SinI GGWCC 2 cut(s) 71, 256
SmiMI CAYNNNNRTG 2 cut(s) 206, 570
SmlI CTYRAG 2 cut(s) 708, 749
SmoI CTYRAG 2 cut(s) 708, 749
Sse9I AATT 5 cut(s) 461, 512, 787, 942, 1055
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 3 cut(s) 62, 243, 860
SspI AATATT 1 cut(s) 771
SspMI CTAG 2 cut(s) 185, 587
StuI AGGCCT 1 cut(s) 16
TaaI ACNGT 2 cut(s) 284, 785
TaqI TCGA 2 cut(s) 23, 647
TasI AATT 5 cut(s) 461, 512, 787, 942, 1055
TatI WGTACW 1 cut(s) 27
TfiI GAWTC 3 cut(s) 181, 295, 649
Tru1I TTAA 3 cut(s) 261, 693, 891
Tru9I TTAA 3 cut(s) 261, 693, 891
TscAI CASTG 1 cut(s) 585
TseFI GTSAC 6 cut(s) 7, 155, 199, 393, 557, 779
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 6 cut(s) 7, 155, 199, 393, 557, 779
TspDTI ATGAA 4 cut(s) 117, 238, 673, 971
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 1 cut(s) 585
Van91I CCANNNNNTGG 1 cut(s) 271
VpaK11BI GGWCC 2 cut(s) 71, 256
XapI RAATTY 2 cut(s) 512, 1055
XbaI TCTAGA 2 cut(s) 184, 586
XceI RCATGY 5 cut(s) 123, 163, 227, 336, 780
XspI CTAG 2 cut(s) 185, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.