AT1G13480

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002710
Physical Location & Seq
Reverse (-)
4622550 .. 4624081
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13480.1

Sequence Viewer

Length: 1164 bp
ATGTATGTTACAAGGCGTTTATCGGAATACCAGAAAAAGCCATCGGAGCTGAAACTGCTTCCACCGGAAGGTCCAAACTCCGGCATAATGGTGATTCAAGACGAAGAATCACAGGCCACTTGCTGCTTTGGTTCTTGCTATGAGGGTAGACTTAAGGGCTTGCCGTTTCCACAAAACGTGAAGCTGAATGCAGCGTATACTAGTGGAGGAGGAGAACACCAGACAACACATCTTACTCCAGTTGTGTTCATTCCTGTTCTTGATCAGCCATTGTCTTCAAACCTTTACTATGTTTTACAAAGGCGTGGGAAGCATACTGGCAAAGCATCTGCAAGTGCAACAGAGGAGGAGAGGGTTTCAAGCTGCTTTTGCTTTAGCTATATTCCTGACGCTAAGCCACAAGAAGCAGATCCTTATGACATATACCAACAATTCGAGATCCATCAACGCCGATCATCATCTCGCTATTACTCTGCCACTTCTGTTGCTTCTGATGGTGTACCACCAAATTACCTTAAGAGGAAAGATTGGTGGGTCAGCTACTCGACTTCGCACGACTTTGGTCTAAGAGATGATGCAAAAGGGATTAACACAAAGCTTCGCTTAGACTCAGAACTTACTAGTTTAGGTAAGAGTATTGAGATAGGGAAATGGTATGTTCCTTTCATATTTGTGATGGAAGGAGATGTAAAAGATCAGATGAACAAATCGACGTTTTACAGCGTGACACTTCAACAAAGATGGGAAGAAGTTTTCTTCTGCGAAAACATTGGCAATGAACATTTTGAGGTTGTAGTTGATGTTGATGTAGAAACAGAATCGGTGAAGCTTGAGGGACAAGAAACTAATTTGAGAGAGGATTCAGGTGATGGAGTTGTTTGGTTTAGTGTCTTAAGGGATGAGAAAGACGACAAGAAGATAGGTCTTGGATCTGTGGTCGTAGAGAGGATGAAATGGGAAGAGGAAAGGTTTGGATGGTTAAACGAAGCAGGCGAAAGATCTAACATTAAGAGATCAGAGAGATTTGAAGGCGGTTCATCGCATTGGAAGAGTTATCGATGTTATGTATTGATAGAGAGCTTTGAATTGACGAGAATGGATGGGAGTTTGGTGTTGACATATGAGTTTAGGCATGTTGATAAGCTAAAGAGCAAGTGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

387

Amino Acids

44.53

Weight (kDa)

5.41

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 123 3.4e-39 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 148, 197
AciI CCGC 1 cut(s) 1032
AclWI GGATC 3 cut(s) 404, 433, 937
AfaI GTAC 1 cut(s) 501
AfiI CCNNNNNNNGG 2 cut(s) 68, 80
AflII CTTAAG 3 cut(s) 152, 515, 892
AgsI TTSAA 6 cut(s) 98, 279, 360, 734, 1028, 1085
AhlI ACTAGT 2 cut(s) 200, 620
AluBI AGCT 9 cut(s) 49, 184, 363, 378, 540, 598, 829, 1080, 1144
AluI AGCT 9 cut(s) 49, 184, 363, 378, 540, 598, 829, 1080, 1144
AlwI GGATC 3 cut(s) 404, 433, 937
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 3 cut(s) 123, 191, 363
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 3 cut(s) 103, 835, 878
AvaII GGWCC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 267
BbvI GCAGC 3 cut(s) 110, 203, 350
BccI CCATC 8 cut(s) 49, 450, 488, 670, 735, 863, 969, 1094
BceAI ACGGC 1 cut(s) 148
BclI TGATCA 1 cut(s) 262
BcuI ACTAGT 2 cut(s) 200, 620
BfaI CTAG 2 cut(s) 201, 621
BfrI CTTAAG 3 cut(s) 152, 515, 892
BglII AGATCT 1 cut(s) 998
BisI GCNGC 3 cut(s) 124, 192, 364
BlpI GCTNAGC 1 cut(s) 393
BlsI GCNGC 3 cut(s) 125, 193, 365
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmsI GCATC 2 cut(s) 335, 565
BoxI GACNNNNGTC 1 cut(s) 561
BpiI GAAGAC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 222
Bpu1102I GCTNAGC 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 851
Bsa29I ATCGAT 1 cut(s) 1057
BsaBI GATNNNNATC 1 cut(s) 457
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 80
Bse1I ACTGG 2 cut(s) 239, 322
Bse3DI GCAATG 1 cut(s) 781
Bse8I GATNNNNATC 1 cut(s) 457
BseCI ATCGAT 1 cut(s) 1057
BseGI GGATG 4 cut(s) 904, 954, 980, 1105
BseJI GATNNNNATC 1 cut(s) 457
BseLI CCNNNNNNNGG 2 cut(s) 68, 80
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 2 cut(s) 239, 322
BseRI GAGGAG 4 cut(s) 222, 225, 359, 362
BseXI GCAGC 3 cut(s) 110, 203, 350
BshFI GGCC 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 1057
BsiSI CCGG 2 cut(s) 65, 81
BslFI GGGAC 1 cut(s) 849
BslI CCNNNNNNNGG 2 cut(s) 68, 80
BsmFI GGGAC 1 cut(s) 849
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 1 cut(s) 116
Bsp143I GATC 8 cut(s) 262, 409, 438, 452, 694, 929, 998, 1013
Bsp1720I GCTNAGC 1 cut(s) 393
BspACI CCGC 1 cut(s) 1032
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 623
BspDI ATCGAT 1 cut(s) 1057
BspPI GGATC 3 cut(s) 404, 433, 937
BspTI CTTAAG 3 cut(s) 152, 515, 892
BsrDI GCAATG 1 cut(s) 781
BsrI ACTGG 2 cut(s) 239, 322
BssMI GATC 8 cut(s) 262, 409, 438, 452, 694, 929, 998, 1013
BssNAI GTATAC 1 cut(s) 198
Bst1107I GTATAC 1 cut(s) 198
Bst6I CTCTTC 2 cut(s) 954, 1043
BstAFI CTTAAG 3 cut(s) 152, 515, 892
BstC8I GCNNGC 2 cut(s) 161, 991
BstDEI CTNAG 4 cut(s) 393, 566, 604, 610
BstF5I GGATG 4 cut(s) 904, 954, 980, 1105
BstKTI GATC 8 cut(s) 265, 412, 441, 455, 697, 932, 1001, 1016
BstMBI GATC 8 cut(s) 262, 409, 438, 452, 694, 929, 998, 1013
BstMWI GCNNNNNNNGC 4 cut(s) 46, 55, 310, 369
BstNSI RCATGY 1 cut(s) 1136
BstPAI GACNNNNGTC 1 cut(s) 561
BstV1I GCAGC 3 cut(s) 110, 203, 350
BstV2I GAAGAC 1 cut(s) 267
BstX2I RGATCY 4 cut(s) 409, 438, 929, 998
BstYI RGATCY 4 cut(s) 409, 438, 929, 998
BstZ17I GTATAC 1 cut(s) 198
Bsu15I ATCGAT 1 cut(s) 1057
BsuRI GGCC 1 cut(s) 116
BsuTUI ATCGAT 1 cut(s) 1057
BtgZI GCGATG 1 cut(s) 1023
BtsCI GGATG 4 cut(s) 904, 954, 980, 1105
Cac8I GCNNGC 2 cut(s) 161, 991
Cfr13I GGNCC 1 cut(s) 71
ClaI ATCGAT 1 cut(s) 1057
CseI GACGC 1 cut(s) 398
Csp6I GTAC 1 cut(s) 500
CspCI CAANNNNNGTGG 2 cut(s) 466, 501
CviAII CATG 1 cut(s) 1133
CviQI GTAC 1 cut(s) 500
DdeI CTNAG 4 cut(s) 393, 566, 604, 610
DpnI GATC 8 cut(s) 264, 411, 440, 454, 696, 931, 1000, 1015
DpnII GATC 8 cut(s) 262, 409, 438, 452, 694, 929, 998, 1013
Eam1104I CTCTTC 2 cut(s) 954, 1043
EarI CTCTTC 2 cut(s) 954, 1043
Eco47I GGWCC 1 cut(s) 71
FaeI CATG 1 cut(s) 1136
FalI AAGNNNNNCTT 2 cut(s) 587, 619
FaqI GGGAC 1 cut(s) 849
FatI CATG 1 cut(s) 1132
FauNDI CATATG 1 cut(s) 1120
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 2 cut(s) 148, 197
Fnu4HI GCNGC 3 cut(s) 124, 192, 364
FokI GGATG 4 cut(s) 911, 961, 987, 1112
Fsp4HI GCNGC 3 cut(s) 124, 192, 364
FspBI CTAG 2 cut(s) 201, 621
GluI GCNGC 3 cut(s) 124, 192, 364
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 1 cut(s) 116
HapII CCGG 2 cut(s) 65, 81
HgaI GACGC 1 cut(s) 398
Hin1II CATG 1 cut(s) 1136
HincII GTYRAC 1 cut(s) 1116
HindII GTYRAC 1 cut(s) 1116
HindIII AAGCTT 2 cut(s) 596, 827
HinfI GANTC 5 cut(s) 94, 107, 608, 818, 860
HpaII CCGG 2 cut(s) 65, 81
HphI GGTGA 3 cut(s) 103, 835, 878
Hpy166II GTNNAC 4 cut(s) 149, 198, 500, 1116
Hpy188I TCNGA 6 cut(s) 25, 46, 493, 613, 699, 1018
Hpy188III TCNNGA 4 cut(s) 98, 260, 386, 436
Hpy8I GTNNAC 4 cut(s) 149, 198, 500, 1116
Hpy99I CGWCG 1 cut(s) 715
HpyAV CCTTC 3 cut(s) 62, 674, 1022
HpyCH4IV ACGT 2 cut(s) 177, 713
HpyCH4V TGCA 4 cut(s) 191, 332, 338, 578
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 55, 310, 369
HpyF3I CTNAG 4 cut(s) 393, 566, 604, 610
HpySE526I ACGT 2 cut(s) 177, 713
Hsp92II CATG 1 cut(s) 1136
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 8 cut(s) 262, 409, 438, 452, 694, 929, 998, 1013
LmnI GCTCC 1 cut(s) 46
Lsp1109I GCAGC 3 cut(s) 110, 203, 350
LweI GCATC 2 cut(s) 335, 565
MaeI CTAG 2 cut(s) 201, 621
MaeII ACGT 2 cut(s) 177, 713
MaeIII GTNAC 2 cut(s) 7, 724
MalI GATC 8 cut(s) 264, 411, 440, 454, 696, 931, 1000, 1015
MboI GATC 8 cut(s) 262, 409, 438, 452, 694, 929, 998, 1013
MboII GAAGA 7 cut(s) 116, 267, 748, 758, 928, 971, 1060
MflI RGATCY 4 cut(s) 409, 438, 929, 998
MluCI AATT 4 cut(s) 431, 508, 847, 1085
MlyI GAGTC 1 cut(s) 602
MseI TTAA 6 cut(s) 153, 516, 588, 893, 980, 1008
MslI CAYNNNNRTG 2 cut(s) 89, 671
MspCI CTTAAG 3 cut(s) 152, 515, 892
MspI CCGG 2 cut(s) 65, 81
Mva1269I GAATGC 1 cut(s) 193
MwoI GCNNNNNNNGC 4 cut(s) 46, 55, 310, 369
NdeI CATATG 1 cut(s) 1120
NdeII GATC 8 cut(s) 262, 409, 438, 452, 694, 929, 998, 1013
NlaIII CATG 1 cut(s) 1136
NmuCI GTSAC 1 cut(s) 724
NspI RCATGY 1 cut(s) 1136
PcsI WCGNNNNNNNCGW 1 cut(s) 990
PctI GAATGC 1 cut(s) 193
PfeI GAWTC 4 cut(s) 94, 107, 818, 860
PkrI GCNGC 3 cut(s) 125, 193, 365
PleI GAGTC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 602
PshAI GACNNNNGTC 1 cut(s) 561
PspPI GGNCC 1 cut(s) 71
PsuI RGATCY 4 cut(s) 409, 438, 929, 998
RsaI GTAC 1 cut(s) 501
RsaNI GTAC 1 cut(s) 500
RseI CAYNNNNRTG 2 cut(s) 89, 671
SaqAI TTAA 6 cut(s) 153, 516, 588, 893, 980, 1008
SatI GCNGC 3 cut(s) 124, 192, 364
Sau3AI GATC 8 cut(s) 262, 409, 438, 452, 694, 929, 998, 1013
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 1 cut(s) 602
SfaNI GCATC 2 cut(s) 335, 565
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 2 cut(s) 89, 671
SmlI CTYRAG 4 cut(s) 152, 515, 830, 892
SmoI CTYRAG 4 cut(s) 152, 515, 830, 892
SpeI ACTAGT 2 cut(s) 200, 620
Sse9I AATT 4 cut(s) 431, 508, 847, 1085
SsiI CCGC 1 cut(s) 1032
SspMI CTAG 2 cut(s) 201, 621
TaiI ACGT 2 cut(s) 180, 716
TaqI TCGA 4 cut(s) 435, 545, 710, 1057
TasI AATT 4 cut(s) 431, 508, 847, 1085
TfiI GAWTC 4 cut(s) 94, 107, 818, 860
Tru1I TTAA 6 cut(s) 153, 516, 588, 893, 980, 1008
Tru9I TTAA 6 cut(s) 153, 516, 588, 893, 980, 1008
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 3 cut(s) 123, 191, 363
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 6 cut(s) 238, 655, 716, 792, 965, 1026
Vha464I CTTAAG 3 cut(s) 152, 515, 892
VpaK11BI GGWCC 1 cut(s) 71
XceI RCATGY 1 cut(s) 1136
XmiI GTMKAC 2 cut(s) 148, 197
XspI CTAG 2 cut(s) 201, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.