Rroxscaffold_5G00377730

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002710
Physical Location & Seq
Reverse (-)
58346341 .. 58347910
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00377730.1

Sequence Viewer

Length: 1188 bp
ATGTATGTGACAAGGCCTCTTTCTATGTACCAGAAGCAACCTTCCATGCTCTCTTTGCCACCTCCAGAGGGTCCAAATTCCGGTATTTTGGTCATACAAGATGAAGAATCAGAGCCTACAATTTTCTTTGGATTGTTTAAAGGCCACGAGCTCAAGGACCTCCCTTTCCCTCAGAACAAGAATCTGAAGCTTCGTTATTCCACAAGCAATGGACAGCAAACATCCGTTTCTTATTTCTACACTGCCTTCATTCCAGTCCTTAACCAGCCTCTGGCATCCAATTGTTATTATGCAATTTCGTCCCGCGGGAAGCATAAAGGACAAGCATACACCAGTTCAACAGAGGAGGACTTGGGAACCTGCTGCTTCTGCACTTACGTCCGAGATGTACCACCGCAACCCTTAAATCCTAATAACACATGGCAGCAATTTCAGGTCCAACGCAAAGGCAGATTTAGTGGTTTTGTTGCCAAAGCTATAGCTTCGGATGGGTTTCCTCCAAAGTTTCTTGGAAGAAAAGGCTGGGAGATATATACCTCAACTCCACGTGACTTCCATTTAGATGAAGCACCAGGTCTAGACTCTGCACTGCGTGCCCACCTTCCGGATTTCAACTTTGAAGTATCGAATGCAAGCTCGAATCCTGTGGTTGTGGGGAAGTGGTATTGTCCCTTCATGTTTGTTAAGGAAGGATCACTAACACCGAAAGATCAAATGAGTAGCACAAGGTATTATGAGATGACACTCGAGCAAAGATGGGAGCAAATATTTGCATGTGACAGTGATGCAAATGAGGAAAATAATGCTGTGGTTGTTGATGTTTCTGTCGAAAATGAATTTGTCACCGTTGCTGGAAATGATGTGGAAGCTGTGCATGAGGAGAGGGATATGGCTAATGGGGTAATCTGGTATTGGGGTTTTAACAAAGTAGGAGGAGAGAGCATTGTAGGGGTGAGCTTAGCAATTTTAGAGAGGGTGAAGTGGGAGCAACAAAGGTTTGGATGGAATGGAGGGAATGAGAGGAAGGTGAGAGTGAAGAAAGTAGAGGAGTTTGGGGGTATGGGAAGGTGGAAGAAATTTGGTTGCTATGTGTTGGTTGAGAGGTTTGTACTGAAAAGAATGGATGGAAGCTTGGTACTAACTTATGGTTTCAGACACACTCATCAGATTAGGAGCAAATGGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

395

Amino Acids

45.03

Weight (kDa)

7.04

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 123 2.9e-37 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 368
AccB7I CCANNNNNTGG 1 cut(s) 271
AccII CGCG 1 cut(s) 306
AccIII TCCGGA 1 cut(s) 604
AciI CCGC 3 cut(s) 304, 306, 395
AclWI GGATC 1 cut(s) 700
AcsI RAATTY 3 cut(s) 76, 836, 1076
AcuI CTGAAG 1 cut(s) 206
AcvI CACGTG 1 cut(s) 548
AdeI CACNNNGTG 1 cut(s) 593
AfaI GTAC 4 cut(s) 29, 390, 1110, 1137
AfiI CCNNNNNNNGG 4 cut(s) 68, 80, 271, 604
AgsI TTSAA 3 cut(s) 339, 613, 620
AjnI CCWGG 1 cut(s) 571
AluBI AGCT 8 cut(s) 151, 190, 476, 482, 636, 869, 957, 1131
AluI AGCT 8 cut(s) 151, 190, 476, 482, 636, 869, 957, 1131
Alw21I GWGCWC 1 cut(s) 153
AlwI GGATC 1 cut(s) 700
AlwNI CAGNNNCTG 1 cut(s) 271
Ama87I CYCGRG 1 cut(s) 746
Aor13HI TCCGGA 1 cut(s) 604
AoxI GGCC 2 cut(s) 14, 142
ApeKI GCWGC 2 cut(s) 363, 424
ApoI RAATTY 3 cut(s) 76, 836, 1076
AspS9I GGNCC 3 cut(s) 71, 157, 436
AsuHPI GGTGA 4 cut(s) 835, 964, 988, 1039
AvaI CYCGRG 1 cut(s) 746
AvaII GGWCC 3 cut(s) 71, 157, 436
BaeGI GKGCMC 1 cut(s) 598
BanII GRGCYC 1 cut(s) 153
BarI GAAGNNNNNNTAC 2 cut(s) 656, 688
BauI CACGAG 1 cut(s) 146
BbrPI CACGTG 1 cut(s) 548
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 350, 436
BccI CCATC 4 cut(s) 482, 750, 996, 1118
BciT130I CCWGG 1 cut(s) 573
BfaI CTAG 1 cut(s) 578
BfmI CTRYAG 1 cut(s) 477
BfuAI ACCTGC 1 cut(s) 368
BisI GCNGC 2 cut(s) 364, 425
BlpI GCTNAGC 1 cut(s) 958
BlsI GCNGC 2 cut(s) 365, 426
Bme1390I CCNGG 1 cut(s) 573
Bme18I GGWCC 3 cut(s) 71, 157, 436
BmeT110I CYCGRG 1 cut(s) 746
BmgT120I GGNCC 3 cut(s) 71, 157, 436
BmiI GGNNCC 2 cut(s) 72, 358
BmrFI CCNGG 1 cut(s) 573
BmsI GCATC 2 cut(s) 284, 775
BpmI CTGGAG 1 cut(s) 48
Bpu1102I GCTNAGC 1 cut(s) 958
BpuEI CTTGAG 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 548
BsaJI CCNNGG 1 cut(s) 304
BsaWI WCCGGW 2 cut(s) 80, 604
BsaXI ACNNNNNCTCC 2 cut(s) 526, 556
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 80, 271, 604
Bse1I ACTGG 2 cut(s) 254, 333
Bse3DI GCAATG 1 cut(s) 214
BseAI TCCGGA 1 cut(s) 604
BseBI CCWGG 1 cut(s) 573
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 5 cut(s) 221, 275, 493, 1007, 1129
BseLI CCNNNNNNNGG 4 cut(s) 68, 80, 271, 604
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 2 cut(s) 254, 333
BseRI GAGGAG 4 cut(s) 359, 893, 948, 1061
BseSI GKGCMC 1 cut(s) 598
BseXI GCAGC 2 cut(s) 350, 436
BseYI CCCAGC 1 cut(s) 522
BsgI GTGCAG 2 cut(s) 355, 570
Bsh1236I CGCG 1 cut(s) 306
BshFI GGCC 2 cut(s) 16, 144
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 746
BsiSI CCGG 2 cut(s) 81, 605
BslFI GGGAC 2 cut(s) 286, 654
BslI CCNNNNNNNGG 4 cut(s) 68, 80, 271, 604
BsmFI GGGAC 2 cut(s) 286, 654
BsmI GAATGC 1 cut(s) 634
BsnI GGCC 2 cut(s) 16, 144
BsoBI CYCGRG 1 cut(s) 746
Bsp1286I GDGCHC 2 cut(s) 153, 598
Bsp13I TCCGGA 1 cut(s) 604
Bsp143I GATC 2 cut(s) 692, 709
Bsp1720I GCTNAGC 1 cut(s) 958
BspACI CCGC 3 cut(s) 304, 306, 395
BspANI GGCC 2 cut(s) 16, 144
BspCNI CTCAG 1 cut(s) 184
BspEI TCCGGA 1 cut(s) 604
BspFNI CGCG 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 72, 358
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 1 cut(s) 700
BsrDI GCAATG 1 cut(s) 214
BsrI ACTGG 2 cut(s) 254, 333
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 2 cut(s) 692, 709
BssSI CACGAG 1 cut(s) 146
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 2 cut(s) 782, 847
BstAPI GCANNNNNTGC 1 cut(s) 593
BstBAI YACGTR 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 594, 634
BstDEI CTNAG 2 cut(s) 171, 958
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 5 cut(s) 221, 275, 493, 1007, 1129
BstFNI CGCG 1 cut(s) 306
BstKTI GATC 2 cut(s) 695, 712
BstMBI GATC 2 cut(s) 692, 709
BstMWI GCNNNNNNNGC 3 cut(s) 55, 369, 593
BstNI CCWGG 1 cut(s) 573
BstNSI RCATGY 1 cut(s) 777
BstSCI CCNGG 1 cut(s) 571
BstSFI CTRYAG 1 cut(s) 477
BstSLI GKGCMC 1 cut(s) 598
BstUI CGCG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 350, 436
BsuRI GGCC 2 cut(s) 16, 144
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 5 cut(s) 221, 275, 493, 1007, 1129
BtsI GCAGTG 2 cut(s) 240, 587
BtsIMutI CAGTG 3 cut(s) 240, 587, 787
BveI ACCTGC 1 cut(s) 368
Cac8I GCNNGC 2 cut(s) 594, 634
CaiI CAGNNNCTG 1 cut(s) 271
Cfr13I GGNCC 3 cut(s) 71, 157, 436
Cfr42I CCGCGG 1 cut(s) 307
CsiI ACCWGGT 1 cut(s) 571
Csp6I GTAC 4 cut(s) 28, 389, 1109, 1136
CviAII CATG 5 cut(s) 46, 420, 676, 774, 875
CviQI GTAC 4 cut(s) 28, 389, 1109, 1136
DdeI CTNAG 2 cut(s) 171, 958
DpnI GATC 2 cut(s) 694, 711
DpnII GATC 2 cut(s) 692, 709
DraI TTTAAA 1 cut(s) 139
DraIII CACNNNGTG 1 cut(s) 593
Ecl136II GAGCTC 1 cut(s) 151
Eco147I AGGCCT 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 3 cut(s) 71, 157, 436
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 206
Eco72I CACGTG 1 cut(s) 548
Eco88I CYCGRG 1 cut(s) 746
EcoICRI GAGCTC 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 571
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 5 cut(s) 49, 423, 679, 777, 878
FaqI GGGAC 2 cut(s) 286, 654
FatI CATG 5 cut(s) 45, 419, 675, 773, 874
FauI CCCGC 2 cut(s) 299, 311
Fnu4HI GCNGC 2 cut(s) 364, 425
FokI GGATG 5 cut(s) 208, 262, 500, 1014, 1136
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 364, 425
FspBI CTAG 1 cut(s) 578
GluI GCNGC 2 cut(s) 364, 425
GsaI CCCAGC 1 cut(s) 526
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 2 cut(s) 16, 144
HapII CCGG 2 cut(s) 81, 605
Hin1II CATG 5 cut(s) 49, 423, 679, 777, 878
HindIII AAGCTT 2 cut(s) 188, 1129
HinfI GANTC 4 cut(s) 107, 181, 581, 640
HpaII CCGG 2 cut(s) 81, 605
HphI GGTGA 4 cut(s) 835, 964, 988, 1039
Hpy188I TCNGA 7 cut(s) 112, 174, 186, 383, 487, 1154, 1167
Hpy188III TCNNGA 3 cut(s) 65, 578, 605
HpyAV CCTTC 7 cut(s) 51, 256, 611, 682, 683, 1018, 1059
HpyCH4III ACNGT 2 cut(s) 782, 847
HpyCH4IV ACGT 2 cut(s) 378, 547
HpyCH4V TGCA 7 cut(s) 293, 372, 587, 632, 773, 788, 874
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 369, 593
HpyF3I CTNAG 2 cut(s) 171, 958
HpySE526I ACGT 2 cut(s) 378, 547
Hsp92II CATG 5 cut(s) 49, 423, 679, 777, 878
Kpn2I TCCGGA 1 cut(s) 604
KspI CCGCGG 1 cut(s) 307
Kzo9I GATC 2 cut(s) 692, 709
LmnI GCTCC 3 cut(s) 760, 985, 1173
Lsp1109I GCAGC 2 cut(s) 350, 436
LweI GCATC 2 cut(s) 284, 775
MabI ACCWGGT 1 cut(s) 571
MaeI CTAG 1 cut(s) 578
MaeII ACGT 2 cut(s) 378, 547
MaeIII GTNAC 4 cut(s) 7, 548, 776, 841
MalI GATC 2 cut(s) 694, 711
MboI GATC 2 cut(s) 692, 709
MboII GAAGA 4 cut(s) 116, 525, 1048, 1084
MfeI CAATTG 1 cut(s) 280
MhlI GDGCHC 2 cut(s) 153, 598
MluCI AATT 8 cut(s) 76, 120, 280, 294, 428, 836, 963, 1076
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 1 cut(s) 463
MroI TCCGGA 1 cut(s) 604
MseI TTAA 5 cut(s) 138, 261, 404, 684, 921
MslI CAYNNNNRTG 1 cut(s) 561
MspA1I CMGCKG 1 cut(s) 306
MspI CCGG 2 cut(s) 81, 605
MspR9I CCNGG 1 cut(s) 573
MunI CAATTG 1 cut(s) 280
Mva1269I GAATGC 1 cut(s) 634
MvaI CCWGG 1 cut(s) 573
MvnI CGCG 1 cut(s) 306
MwoI GCNNNNNNNGC 3 cut(s) 55, 369, 593
NdeII GATC 2 cut(s) 692, 709
NlaIII CATG 5 cut(s) 49, 423, 679, 777, 878
NlaIV GGNNCC 2 cut(s) 72, 358
NmuCI GTSAC 4 cut(s) 7, 548, 776, 841
NspI RCATGY 1 cut(s) 777
PaeR7I CTCGAG 1 cut(s) 746
PceI AGGCCT 1 cut(s) 16
PctI GAATGC 1 cut(s) 634
PfeI GAWTC 3 cut(s) 107, 181, 640
PflMI CCANNNNNTGG 1 cut(s) 271
PkrI GCNGC 2 cut(s) 365, 426
PleI GAGTC 1 cut(s) 575
PmaCI CACGTG 1 cut(s) 548
PmlI CACGTG 1 cut(s) 548
PpsI GAGTC 1 cut(s) 575
Ppu21I YACGTR 1 cut(s) 548
PpuMI RGGWCCY 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 571
PspCI CACGTG 1 cut(s) 548
PspFI CCCAGC 1 cut(s) 522
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 2 cut(s) 72, 358
PspPI GGNCC 3 cut(s) 71, 157, 436
PspPPI RGGWCCY 1 cut(s) 157
PspXI VCTCGAGB 1 cut(s) 746
PstNI CAGNNNCTG 1 cut(s) 271
RsaI GTAC 4 cut(s) 29, 390, 1110, 1137
RsaNI GTAC 4 cut(s) 28, 389, 1109, 1136
RseI CAYNNNNRTG 1 cut(s) 561
SacI GAGCTC 1 cut(s) 153
SacII CCGCGG 1 cut(s) 307
SaqAI TTAA 5 cut(s) 138, 261, 404, 684, 921
SatI GCNGC 2 cut(s) 364, 425
Sau3AI GATC 2 cut(s) 692, 709
Sau96I GGNCC 3 cut(s) 71, 157, 436
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 1 cut(s) 573
SduI GDGCHC 2 cut(s) 153, 598
SexAI ACCWGGT 1 cut(s) 571
SfaNI GCATC 2 cut(s) 284, 775
SfcI CTRYAG 1 cut(s) 477
Sfr274I CTCGAG 1 cut(s) 746
Sfr303I CCGCGG 1 cut(s) 307
SgrBI CCGCGG 1 cut(s) 307
SinI GGWCC 3 cut(s) 71, 157, 436
SlaI CTCGAG 1 cut(s) 746
SmiMI CAYNNNNRTG 1 cut(s) 561
SmlI CTYRAG 2 cut(s) 152, 746
SmoI CTYRAG 2 cut(s) 152, 746
Sse9I AATT 8 cut(s) 76, 120, 280, 294, 428, 836, 963, 1076
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 3 cut(s) 304, 306, 395
SspI AATATT 1 cut(s) 768
SspMI CTAG 1 cut(s) 578
SstI GAGCTC 1 cut(s) 153
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 1 cut(s) 571
TaaI ACNGT 2 cut(s) 782, 847
TaiI ACGT 2 cut(s) 381, 550
TaqI TCGA 4 cut(s) 626, 638, 747, 828
TasI AATT 8 cut(s) 76, 120, 280, 294, 428, 836, 963, 1076
TatI WGTACW 1 cut(s) 1108
TfiI GAWTC 3 cut(s) 107, 181, 640
Tru1I TTAA 5 cut(s) 138, 261, 404, 684, 921
Tru9I TTAA 5 cut(s) 138, 261, 404, 684, 921
TscAI CASTG 3 cut(s) 247, 594, 787
TseFI GTSAC 4 cut(s) 7, 548, 776, 841
TseI GCWGC 2 cut(s) 363, 424
Tsp45I GTSAC 4 cut(s) 7, 548, 776, 841
TspDTI ATGAA 5 cut(s) 117, 238, 579, 664, 849
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 3 cut(s) 247, 594, 787
Van91I CCANNNNNTGG 1 cut(s) 271
VpaK11BI GGWCC 3 cut(s) 71, 157, 436
XapI RAATTY 3 cut(s) 76, 836, 1076
XbaI TCTAGA 1 cut(s) 577
XceI RCATGY 1 cut(s) 777
XhoI CTCGAG 1 cut(s) 746
XspI CTAG 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.