AT1G13520

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002710
Physical Location & Seq
Reverse (-)
4631633 .. 4633299
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13520.1

Sequence Viewer

Length: 1164 bp
ATGTATGTTACAAGGCATCTCTCCGAATACCAGAGAAACTCGTCGGACTTGACACGATCGTTGCCGGAAGGTCCAAACTCCGGCGTACTTGTGATTCAAGACGAAGAGTCAAAACCGACTTGTTGCTTTGGAAATTGCTACGATGGTGAACTCAAAGGCTTACCGTTCCCACAGAACGCAAAGCTGACTGTGACTTACAGAACCGGAACTGGTAATGACAGGCGCAGTTACCATGACCAGGTTCTGTTCATTCCGGTTCTTGATCAGCCTTATTATTCGAACCGTTATTATGTCATTAAACGACGTGGGAAGCAATCAGGAGGAGCTTCGGCGAGTGCAAAGGAAGAAGACAGAGTCCCCTGCTGCTTTTGCTTCAGCTATGTTCCTGAAGTTAAGCCACAAGAAGCAGATCCTTATGATATATATCAACAGTTCGAGGTCCATCAACGTAAACCATCATCAGGCTATTACACTGCCACTTCAGTTGCTCCTAATGGGATACCACCAGAGTTCCTTAAGAGAAAGTACTGGACCGTTGAGTATTCGAATTCCCAAGACTTTGGTTTGACAGATGATGCAAAAGGGATCAACACTACGCTTCGTTCCAAGCTTCCCAACGATATGAATACAAGTGTTGTGGTAGGGAAATGGTATGTTCCTTTCATATTTGTGAAAGAAAGAGATGCAAAAGATCAGATTAAGAGCTCACCTTATTACAGCATGACGCTTAAACAAAGATGGGAAGAGGTTTACTCATGCGTAAACGTTAACTACAACCAAAAAGGAGGAGAGGTTGTAGTTGATGTTGACGTAGAAACACAAGTGGTAAAGCTTGAGGGACAAGAAACTATTTCTAGAGAGACAAGTGGTGGTGGATTTGTTTGGTTTAGTGTTTTAGGGGATGAGAGACAAGACAAGAAGATAGGTCTTGGGTCTGTTGTCGTGGAGAGGATGAAATGGGAAGAGGAAAGGTTCGGATGGTTAAACAACGGTGAAAGATCTAACATTAAGAGATCAGAGAGATTTGAAGGCGGGTCATCGCATTGGAAGAGTTATCGATGTTTGGTATTGATAGAGAGCTTCGAATTGAAGAGAATGGATGGGAGTTTGGTGTTGACATATGAGTTTACGCATGTTGATAAGTTAAAGAGCAAGTGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

387

Amino Acids

44.53

Weight (kDa)

6.57

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 123 2.3e-41 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1032
AclI AACGTT 1 cut(s) 765
AclWI GGATC 2 cut(s) 404, 593
AcsI RAATTY 1 cut(s) 547
AcuI CTGAAG 3 cut(s) 358, 408, 465
AfaI GTAC 2 cut(s) 87, 527
AfiI CCNNNNNNNGG 3 cut(s) 80, 238, 461
AflII CTTAAG 1 cut(s) 515
AgsI TTSAA 3 cut(s) 98, 1028, 1090
AhdI GACNNNNNGTC 1 cut(s) 106
AjiI CACGTC 1 cut(s) 305
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 7 cut(s) 184, 326, 378, 610, 705, 832, 1080
AluI AGCT 7 cut(s) 184, 326, 378, 610, 705, 832, 1080
Alw21I GWGCWC 1 cut(s) 707
Alw26I GTCTC 2 cut(s) 854, 901
AlwI GGATC 2 cut(s) 404, 593
AlwNI CAGNNNCTG 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 363
ApoI RAATTY 1 cut(s) 547
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 3 cut(s) 71, 439, 531
AsuHPI GGTGA 3 cut(s) 158, 699, 1004
AsuII TTCGAA 3 cut(s) 278, 545, 1083
AvaII GGWCC 3 cut(s) 71, 439, 531
BanII GRGCYC 1 cut(s) 707
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 707
BbvI GCAGC 1 cut(s) 350
BccI CCATC 6 cut(s) 137, 450, 463, 732, 972, 1094
BciT130I CCWGG 1 cut(s) 239
BciVI GTATCC 1 cut(s) 492
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 2 cut(s) 854, 901
BfaI CTAG 1 cut(s) 855
BfrI CTTAAG 1 cut(s) 515
BfuI GTATCC 1 cut(s) 492
BglII AGATCT 1 cut(s) 998
BisI GCNGC 1 cut(s) 364
BlsI GCNGC 1 cut(s) 365
BmcAI AGTACT 1 cut(s) 527
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 3 cut(s) 71, 439, 531
BmeRI GACNNNNNGTC 1 cut(s) 106
BmgBI CACGTC 1 cut(s) 305
BmgT120I GGNCC 3 cut(s) 71, 439, 531
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 3 cut(s) 25, 565, 673
BpiI GAAGAC 1 cut(s) 354
BplI GAGNNNNNCTC 2 cut(s) 737, 769
Bpu14I TTCGAA 3 cut(s) 278, 545, 1083
BpuEI CTTGAG 1 cut(s) 854
Bsa29I ATCGAT 1 cut(s) 1057
BsaBI GATNNNNATC 1 cut(s) 423
BsaWI WCCGGW 2 cut(s) 203, 253
BsaXI ACNNNNNCTCC 4 cut(s) 777, 780, 807, 810
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 238, 461
Bse1I ACTGG 2 cut(s) 214, 533
Bse8I GATNNNNATC 1 cut(s) 423
BseBI CCWGG 1 cut(s) 239
BseCI ATCGAT 1 cut(s) 1057
BseGI GGATG 4 cut(s) 907, 957, 983, 1105
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 3 cut(s) 80, 238, 461
BseNI ACTGG 2 cut(s) 214, 533
BseRI GAGGAG 2 cut(s) 336, 801
BseXI GCAGC 1 cut(s) 350
Bsh1285I CGRYCG 1 cut(s) 59
BshVI ATCGAT 1 cut(s) 1057
BsiEI CGRYCG 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 707
BsiSI CCGG 4 cut(s) 65, 81, 204, 254
BslFI GGGAC 2 cut(s) 341, 852
BslI CCNNNNNNNGG 3 cut(s) 80, 238, 461
BsmAI GTCTC 2 cut(s) 854, 901
BsmFI GGGAC 2 cut(s) 341, 852
Bsp119I TTCGAA 3 cut(s) 278, 545, 1083
Bsp1286I GDGCHC 1 cut(s) 707
Bsp143I GATC 7 cut(s) 56, 262, 409, 585, 691, 998, 1013
BspACI CCGC 1 cut(s) 1032
BspDI ATCGAT 1 cut(s) 1057
BspPI GGATC 2 cut(s) 404, 593
BspT104I TTCGAA 3 cut(s) 278, 545, 1083
BspTI CTTAAG 1 cut(s) 515
BsrI ACTGG 2 cut(s) 214, 533
BssMI GATC 7 cut(s) 56, 262, 409, 585, 691, 998, 1013
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 6 cut(s) 165, 190, 284, 432, 535, 992
Bst6I CTCTTC 5 cut(s) 99, 738, 957, 1043, 1085
BstAFI CTTAAG 1 cut(s) 515
BstBI TTCGAA 3 cut(s) 278, 545, 1083
BstF5I GGATG 4 cut(s) 907, 957, 983, 1105
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 7 cut(s) 59, 265, 412, 588, 694, 1001, 1016
BstMAI GTCTC 2 cut(s) 854, 901
BstMBI GATC 7 cut(s) 56, 262, 409, 585, 691, 998, 1013
BstMCI CGRYCG 1 cut(s) 59
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 1136
BstSCI CCNGG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 350
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 2 cut(s) 409, 998
BstXI CCANNNNNNTGG 1 cut(s) 560
BstYI RGATCY 2 cut(s) 409, 998
Bsu15I ATCGAT 1 cut(s) 1057
BsuI GTATCC 1 cut(s) 492
BsuTUI ATCGAT 1 cut(s) 1057
BtgZI GCGATG 1 cut(s) 1023
BtrI CACGTC 1 cut(s) 305
BtsCI GGATG 4 cut(s) 907, 957, 983, 1105
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 1 cut(s) 471
CaiI CAGNNNCTG 1 cut(s) 244
CfoI GCGC 1 cut(s) 225
Cfr13I GGNCC 3 cut(s) 71, 439, 531
ClaI ATCGAT 1 cut(s) 1057
CseI GACGC 1 cut(s) 733
CsiI ACCWGGT 1 cut(s) 237
Csp6I GTAC 2 cut(s) 86, 526
CspCI CAANNNNNGTGG 4 cut(s) 466, 501, 618, 653
CviAII CATG 4 cut(s) 233, 721, 756, 1133
CviQI GTAC 2 cut(s) 86, 526
DpnI GATC 7 cut(s) 58, 264, 411, 587, 693, 1000, 1015
DpnII GATC 7 cut(s) 56, 262, 409, 585, 691, 998, 1013
DriI GACNNNNNGTC 1 cut(s) 106
Eam1104I CTCTTC 5 cut(s) 99, 738, 957, 1043, 1085
Eam1105I GACNNNNNGTC 1 cut(s) 106
EarI CTCTTC 5 cut(s) 99, 738, 957, 1043, 1085
Ecl136II GAGCTC 1 cut(s) 705
Eco24I GRGCYC 1 cut(s) 707
Eco47I GGWCC 3 cut(s) 71, 439, 531
Eco53kI GAGCTC 1 cut(s) 705
Eco57I CTGAAG 3 cut(s) 358, 408, 465
EcoICRI GAGCTC 1 cut(s) 705
EcoRI GAATTC 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 707
FaeI CATG 4 cut(s) 236, 724, 759, 1136
FaqI GGGAC 2 cut(s) 341, 852
FatI CATG 4 cut(s) 232, 720, 755, 1132
FauI CCCGC 1 cut(s) 1025
FauNDI CATATG 1 cut(s) 1120
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 364
FokI GGATG 4 cut(s) 914, 964, 990, 1112
FriOI GRGCYC 1 cut(s) 707
Fsp4HI GCNGC 1 cut(s) 364
FspBI CTAG 1 cut(s) 855
GlaI GCGC 1 cut(s) 224
GluI GCNGC 1 cut(s) 364
HapII CCGG 4 cut(s) 65, 81, 204, 254
HgaI GACGC 1 cut(s) 733
HhaI GCGC 1 cut(s) 225
Hin1II CATG 4 cut(s) 236, 724, 759, 1136
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HincII GTYRAC 3 cut(s) 769, 808, 1116
HindII GTYRAC 3 cut(s) 769, 808, 1116
HindIII AAGCTT 2 cut(s) 608, 830
HinfI GANTC 3 cut(s) 94, 107, 354
HpaI GTTAAC 1 cut(s) 769
HpaII CCGG 4 cut(s) 65, 81, 204, 254
HphI GGTGA 3 cut(s) 158, 699, 1004
Hpy166II GTNNAC 8 cut(s) 149, 452, 751, 763, 769, 808, 1116, 1128
Hpy188I TCNGA 5 cut(s) 25, 46, 696, 977, 1018
Hpy188III TCNNGA 5 cut(s) 98, 260, 318, 386, 855
Hpy8I GTNNAC 8 cut(s) 149, 452, 751, 763, 769, 808, 1116, 1128
Hpy99I CGWCG 2 cut(s) 46, 306
HpyAV CCTTC 2 cut(s) 62, 1022
HpyCH4III ACNGT 6 cut(s) 165, 190, 284, 432, 535, 992
HpyCH4IV ACGT 4 cut(s) 304, 448, 765, 810
HpyCH4V TGCA 3 cut(s) 338, 578, 686
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
HpySE526I ACGT 4 cut(s) 304, 448, 765, 810
Hsp92II CATG 4 cut(s) 236, 724, 759, 1136
HspAI GCGC 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 262
KspAI GTTAAC 1 cut(s) 769
Kzo9I GATC 7 cut(s) 56, 262, 409, 585, 691, 998, 1013
LmnI GCTCC 2 cut(s) 323, 493
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 3 cut(s) 25, 565, 673
MabI ACCWGGT 1 cut(s) 237
MaeI CTAG 1 cut(s) 855
MaeII ACGT 4 cut(s) 304, 448, 765, 810
MaeIII GTNAC 3 cut(s) 7, 190, 227
MalI GATC 7 cut(s) 58, 264, 411, 587, 693, 1000, 1015
MboI GATC 7 cut(s) 56, 262, 409, 585, 691, 998, 1013
MboII GAAGA 8 cut(s) 116, 356, 359, 755, 931, 974, 1060, 1102
MflI RGATCY 2 cut(s) 409, 998
MhlI GDGCHC 1 cut(s) 707
MluCI AATT 3 cut(s) 133, 547, 1085
MlyI GAGTC 2 cut(s) 116, 363
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 8 cut(s) 314, 430, 739, 779, 784, 829, 942, 958
MseI TTAA 9 cut(s) 297, 393, 516, 699, 729, 768, 983, 1008, 1145
MslI CAYNNNNRTG 1 cut(s) 668
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 4 cut(s) 65, 81, 204, 254
MspR9I CCNGG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 369
NdeI CATATG 1 cut(s) 1120
NdeII GATC 7 cut(s) 56, 262, 409, 585, 691, 998, 1013
NlaIII CATG 4 cut(s) 236, 724, 759, 1136
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 1 cut(s) 1136
NspV TTCGAA 3 cut(s) 278, 545, 1083
PfeI GAWTC 1 cut(s) 94
PflFI GACNNNGTC 1 cut(s) 353
PkrI GCNGC 1 cut(s) 365
Ple19I CGATCG 1 cut(s) 59
PleI GAGTC 2 cut(s) 115, 362
PpsI GAGTC 2 cut(s) 115, 362
Psp124BI GAGCTC 1 cut(s) 707
Psp1406I AACGTT 1 cut(s) 765
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspPI GGNCC 3 cut(s) 71, 439, 531
PstNI CAGNNNCTG 1 cut(s) 244
PsuI RGATCY 2 cut(s) 409, 998
PsyI GACNNNGTC 1 cut(s) 353
PvuI CGATCG 1 cut(s) 59
RsaI GTAC 2 cut(s) 87, 527
RsaNI GTAC 2 cut(s) 86, 526
RseI CAYNNNNRTG 1 cut(s) 668
SacI GAGCTC 1 cut(s) 707
SaqAI TTAA 9 cut(s) 297, 393, 516, 699, 729, 768, 983, 1008, 1145
SatI GCNGC 1 cut(s) 364
Sau3AI GATC 7 cut(s) 56, 262, 409, 585, 691, 998, 1013
Sau96I GGNCC 3 cut(s) 71, 439, 531
ScaI AGTACT 1 cut(s) 527
SchI GAGTC 2 cut(s) 116, 363
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 1 cut(s) 707
SexAI ACCWGGT 1 cut(s) 237
SfaNI GCATC 3 cut(s) 25, 565, 673
SfuI TTCGAA 3 cut(s) 278, 545, 1083
SinI GGWCC 3 cut(s) 71, 439, 531
SmiMI CAYNNNNRTG 1 cut(s) 668
SmlI CTYRAG 2 cut(s) 515, 833
SmoI CTYRAG 2 cut(s) 515, 833
Sse9I AATT 3 cut(s) 133, 547, 1085
SsiI CCGC 1 cut(s) 1032
SspMI CTAG 1 cut(s) 855
SstI GAGCTC 1 cut(s) 707
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 6 cut(s) 165, 190, 284, 432, 535, 992
TaiI ACGT 4 cut(s) 307, 451, 768, 813
TaqI TCGA 5 cut(s) 278, 435, 545, 1057, 1083
TasI AATT 3 cut(s) 133, 547, 1085
TatI WGTACW 1 cut(s) 525
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 9 cut(s) 297, 393, 516, 699, 729, 768, 983, 1008, 1145
Tru9I TTAA 9 cut(s) 297, 393, 516, 699, 729, 768, 983, 1008, 1145
TscAI CASTG 1 cut(s) 478
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 4 cut(s) 238, 638, 652, 968
TspRI CASTG 1 cut(s) 478
Tth111I GACNNNGTC 1 cut(s) 353
Vha464I CTTAAG 1 cut(s) 515
VpaK11BI GGWCC 3 cut(s) 71, 439, 531
XapI RAATTY 1 cut(s) 547
XbaI TCTAGA 1 cut(s) 854
XceI RCATGY 1 cut(s) 1136
XspI CTAG 1 cut(s) 855
ZrmI AGTACT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.