AT1G13550

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002710
Physical Location & Seq
Reverse (-)
4636984 .. 4638330
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13550.1

Sequence Viewer

Length: 1167 bp
ATGTATGTAACAAGGCGTTTATCAGAGTATCGGAAAAACCCGTCGGAACTTAAGAAGCCTCCACCGGAAGGTCCAAACTCCGGCGTACTTGTGATTCAAGACGAAGAATCGTTGACCACTTGTTGCTTTGGTTTGTGCAACGAGATTTTCCTAAGAGGATTACCGTTTCCACAGAACGCAGCGTTGACAGTTAGACGCGACGACGGTGGACAGAACAATACTGTTCATCGTGATCCGGTTGTGTTCATACCTGTTCTTGGTCAACCTCTATCTTCTAACCGTTATTACACATATGAACGATGCGGGTATTATTCAAGAGAATCATCTACTAGTACTGAAAAAGAGGTGGAGAGAGTTACATGCTGCTTCTGCATTAGATTTAACCATGTTCATATGTATAAGAAGCCACAACCAGATCCTTATGACATTCACCAACAAGTAGTGATCACAACAACCTCTTCGCCTTCCCGTTGTTACTACTTTGCGAAGCCTGTTGCTCCTAATGCTCTACTACCTGCATTTCTTATGAGACAAGGCTGGACAATAGAAAACTCGACTTCTACACTACAAGACTTTGGTCTCATAGATGACGCAAAAGGTCTTAACTTAGAGCTTCGTTCTAAGCTTCCCGGTCTTGATATAAGCGTTGTTGTAGGGAAATGGTATGTTCCTTTCATATTTGTGAAGGAAGGAGACATAATAGATCAAGTGAAAATATCAATGTATTACAACATGACGCTTCATCAAAGATGGGAAGAAGTTTTCTTCTATGAGAATGTTCACAATGAAGATTGTGTTGAGGTCGTTGTTGATGTTGATCTTGAACTCCAAGTGATTAACATTGAAGGACAGAAGGTTAGTATAGAGACAACGAATGTGGATGCTAAAGGGATTGTTTGGTTCCAAGTTAAAGACAAGAAGATAGGTTTAAGGTCAGTGGTTGTGGAGAGGATGGAAAGTGAAGAGGAGAGTTTCGGGTGGAAGAAGGTAGACGGAAACCGAGTGACGGTTAAGAGATTGGATCGGTTCGAAGGCGGTTCATCGCATTGGAAGAGTTATAAATGTTATGTATTGGTAGAGAGATTTGAATTGAAAAGAATGGATGAGAGTTTGGTGTTGACATATGAGTTTAGACATGCTGATAAGTTGAGGACTATCCAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

388

Amino Acids

45.0

Weight (kDa)

6.13

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 123 3e-36 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1059
Acc36I ACCTGC 1 cut(s) 523
AccI GTMKAC 1 cut(s) 990
AccII CGCG 1 cut(s) 198
AciI CCGC 2 cut(s) 303, 1035
AclWI GGATC 3 cut(s) 227, 410, 1029
AfaI GTAC 2 cut(s) 87, 334
AfiI CCNNNNNNNGG 4 cut(s) 68, 80, 257, 1006
AflII CTTAAG 1 cut(s) 50
AgsI TTSAA 6 cut(s) 98, 315, 824, 845, 1088, 1093
AhlI ACTAGT 1 cut(s) 329
AluBI AGCT 2 cut(s) 613, 625
AluI AGCT 2 cut(s) 613, 625
Alw26I GTCTC 4 cut(s) 523, 584, 687, 860
AlwI GGATC 3 cut(s) 227, 410, 1029
ApeKI GCWGC 2 cut(s) 179, 363
AspS9I GGNCC 1 cut(s) 71
AsuC2I CCSGG 1 cut(s) 630
AsuHPI GGTGA 1 cut(s) 422
AsuII TTCGAA 1 cut(s) 1029
AvaII GGWCC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 191, 350
BccI CCATC 2 cut(s) 744, 946
BclI TGATCA 1 cut(s) 444
BcnI CCSGG 1 cut(s) 630
BcoDI GTCTC 4 cut(s) 523, 584, 687, 860
BcuI ACTAGT 1 cut(s) 329
BfaI CTAG 1 cut(s) 330
BfrI CTTAAG 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 523
BisI GCNGC 2 cut(s) 180, 364
BlsI GCNGC 2 cut(s) 181, 365
BmcAI AGTACT 1 cut(s) 334
Bme1390I CCNGG 1 cut(s) 630
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 902
BmrFI CCNGG 1 cut(s) 630
BmsI GCATC 2 cut(s) 290, 871
BoxI GACNNNNGTC 1 cut(s) 576
Bpu14I TTCGAA 1 cut(s) 1029
BpuMI CCSGG 1 cut(s) 630
BsaBI GATNNNNATC 1 cut(s) 816
BsaI GGTCTC 1 cut(s) 584
BsaWI WCCGGW 2 cut(s) 64, 235
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 80, 257, 1006
Bse8I GATNNNNATC 1 cut(s) 816
BseGI GGATG 3 cut(s) 886, 957, 1108
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 4 cut(s) 68, 80, 257, 1006
BseRI GAGGAG 1 cut(s) 980
BseXI GCAGC 2 cut(s) 191, 350
Bsh1236I CGCG 1 cut(s) 198
BsiSI CCGG 4 cut(s) 65, 81, 236, 630
BslI CCNNNNNNNGG 4 cut(s) 68, 80, 257, 1006
BsmAI GTCTC 4 cut(s) 523, 584, 687, 860
Bso31I GGTCTC 1 cut(s) 584
Bsp119I TTCGAA 1 cut(s) 1029
Bsp143I GATC 6 cut(s) 232, 415, 444, 703, 817, 1021
BspACI CCGC 2 cut(s) 303, 1035
BspFNI CGCG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 902
BspMI ACCTGC 1 cut(s) 523
BspPI GGATC 3 cut(s) 227, 410, 1029
BspT104I TTCGAA 1 cut(s) 1029
BspTI CTTAAG 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 584
BssMI GATC 6 cut(s) 232, 415, 444, 703, 817, 1021
Bst4CI ACNGT 6 cut(s) 165, 190, 206, 223, 281, 1009
Bst6I CTCTTC 3 cut(s) 463, 957, 1046
BstAFI CTTAAG 1 cut(s) 50
BstBI TTCGAA 1 cut(s) 1029
BstDEI CTNAG 3 cut(s) 152, 607, 621
BstF5I GGATG 3 cut(s) 886, 957, 1108
BstFNI CGCG 1 cut(s) 198
BstKTI GATC 6 cut(s) 235, 418, 447, 706, 820, 1024
BstMAI GTCTC 4 cut(s) 523, 584, 687, 860
BstMBI GATC 6 cut(s) 232, 415, 444, 703, 817, 1021
BstMWI GCNNNNNNNGC 2 cut(s) 369, 503
BstNSI RCATGY 2 cut(s) 363, 1139
BstPAI GACNNNNGTC 1 cut(s) 576
BstSCI CCNGG 1 cut(s) 628
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 2 cut(s) 191, 350
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
BtgZI GCGATG 1 cut(s) 1026
BtsCI GGATG 3 cut(s) 886, 957, 1108
BtsIMutI CAGTG 1 cut(s) 942
BveI ACCTGC 1 cut(s) 523
Cfr13I GGNCC 1 cut(s) 71
CseI GACGC 3 cut(s) 204, 599, 745
Csp6I GTAC 2 cut(s) 86, 333
CspCI CAANNNNNGTGG 2 cut(s) 858, 893
CviAII CATG 4 cut(s) 360, 386, 733, 1136
CviJI RGCY 6 cut(s) 58, 406, 490, 537, 613, 625
CviKI_1 RGCY 6 cut(s) 58, 406, 490, 537, 613, 625
CviQI GTAC 2 cut(s) 86, 333
DdeI CTNAG 3 cut(s) 152, 607, 621
DpnI GATC 6 cut(s) 234, 417, 446, 705, 819, 1023
DpnII GATC 6 cut(s) 232, 415, 444, 703, 817, 1021
Eam1104I CTCTTC 3 cut(s) 463, 957, 1046
EarI CTCTTC 3 cut(s) 463, 957, 1046
Eco31I GGTCTC 1 cut(s) 584
Eco47I GGWCC 1 cut(s) 71
FaeI CATG 4 cut(s) 363, 389, 736, 1139
FatI CATG 4 cut(s) 359, 385, 732, 1135
FauI CCCGC 1 cut(s) 296
FauNDI CATATG 3 cut(s) 292, 393, 1123
FbaI TGATCA 1 cut(s) 444
FblI GTMKAC 1 cut(s) 990
Fnu4HI GCNGC 2 cut(s) 180, 364
FokI GGATG 3 cut(s) 893, 964, 1115
Fsp4HI GCNGC 2 cut(s) 180, 364
FspBI CTAG 1 cut(s) 330
GluI GCNGC 2 cut(s) 180, 364
HapII CCGG 4 cut(s) 65, 81, 236, 630
HgaI GACGC 3 cut(s) 204, 599, 745
Hin1II CATG 4 cut(s) 363, 389, 736, 1139
HincII GTYRAC 4 cut(s) 114, 186, 263, 1119
HindII GTYRAC 4 cut(s) 114, 186, 263, 1119
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 3 cut(s) 94, 107, 320
HpaII CCGG 4 cut(s) 65, 81, 236, 630
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 7 cut(s) 114, 186, 209, 263, 781, 991, 1119
Hpy188I TCNGA 3 cut(s) 25, 33, 46
Hpy188III TCNNGA 5 cut(s) 98, 230, 315, 635, 821
Hpy8I GTNNAC 7 cut(s) 114, 186, 209, 263, 781, 991, 1119
Hpy99I CGWCG 3 cut(s) 46, 203, 206
HpyAV CCTTC 8 cut(s) 62, 474, 679, 683, 839, 847, 979, 1025
HpyCH4III ACNGT 6 cut(s) 165, 190, 206, 223, 281, 1009
HpyCH4V TGCA 3 cut(s) 138, 372, 518
HpyF10VI GCNNNNNNNGC 2 cut(s) 369, 503
HpyF3I CTNAG 3 cut(s) 152, 607, 621
Hsp92II CATG 4 cut(s) 363, 389, 736, 1139
Ksp22I TGATCA 1 cut(s) 444
Kzo9I GATC 6 cut(s) 232, 415, 444, 703, 817, 1021
LmnI GCTCC 1 cut(s) 502
LpnPI CCDG 9 cut(s) 78, 94, 249, 264, 426, 504, 523, 528, 643
Lsp1109I GCAGC 2 cut(s) 191, 350
LweI GCATC 2 cut(s) 290, 871
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 4 cut(s) 7, 355, 473, 1003
MalI GATC 6 cut(s) 234, 417, 446, 705, 819, 1023
MboI GATC 6 cut(s) 232, 415, 444, 703, 817, 1021
MflI RGATCY 1 cut(s) 415
MluCI AATT 1 cut(s) 1088
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 9 cut(s) 69, 149, 276, 337, 466, 793, 942, 958, 1143
MseI TTAA 7 cut(s) 51, 381, 603, 837, 909, 929, 1011
MslI CAYNNNNRTG 1 cut(s) 680
MspCI CTTAAG 1 cut(s) 50
MspI CCGG 4 cut(s) 65, 81, 236, 630
MspR9I CCNGG 1 cut(s) 630
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 369, 503
NciI CCSGG 1 cut(s) 630
NdeI CATATG 3 cut(s) 292, 393, 1123
NdeII GATC 6 cut(s) 232, 415, 444, 703, 817, 1021
NlaIII CATG 4 cut(s) 363, 389, 736, 1139
NlaIV GGNNCC 1 cut(s) 902
NmuCI GTSAC 1 cut(s) 1003
NspI RCATGY 2 cut(s) 363, 1139
NspV TTCGAA 1 cut(s) 1029
PfeI GAWTC 3 cut(s) 94, 107, 320
PkrI GCNGC 2 cut(s) 181, 365
PshAI GACNNNNGTC 1 cut(s) 576
PsiI TTATAA 1 cut(s) 1059
PspN4I GGNNCC 1 cut(s) 902
PspPI GGNCC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 415
RsaI GTAC 2 cut(s) 87, 334
RsaNI GTAC 2 cut(s) 86, 333
RseI CAYNNNNRTG 1 cut(s) 680
SaqAI TTAA 7 cut(s) 51, 381, 603, 837, 909, 929, 1011
SatI GCNGC 2 cut(s) 180, 364
Sau3AI GATC 6 cut(s) 232, 415, 444, 703, 817, 1021
Sau96I GGNCC 1 cut(s) 71
ScaI AGTACT 1 cut(s) 334
ScrFI CCNGG 1 cut(s) 630
SfaNI GCATC 2 cut(s) 290, 871
SfuI TTCGAA 1 cut(s) 1029
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 680
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SpeI ACTAGT 1 cut(s) 329
Sse9I AATT 1 cut(s) 1088
SsiI CCGC 2 cut(s) 303, 1035
SspI AATATT 1 cut(s) 1163
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 628
TaaI ACNGT 6 cut(s) 165, 190, 206, 223, 281, 1009
TaqI TCGA 2 cut(s) 554, 1029
TasI AATT 1 cut(s) 1088
TatI WGTACW 1 cut(s) 332
TfiI GAWTC 3 cut(s) 94, 107, 320
Tru1I TTAA 7 cut(s) 51, 381, 603, 837, 909, 929, 1011
Tru9I TTAA 7 cut(s) 51, 381, 603, 837, 909, 929, 1011
TscAI CASTG 1 cut(s) 942
TseFI GTSAC 1 cut(s) 1003
TseI GCWGC 2 cut(s) 179, 363
Tsp45I GTSAC 1 cut(s) 1003
TspDTI ATGAA 8 cut(s) 215, 235, 309, 380, 664, 731, 801, 1029
TspGWI ACGGA 1 cut(s) 1008
TspRI CASTG 1 cut(s) 942
Vha464I CTTAAG 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 71
XceI RCATGY 2 cut(s) 363, 1139
XmiI GTMKAC 1 cut(s) 990
XspI CTAG 1 cut(s) 330
ZrmI AGTACT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.