AT1G13510

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002710
Physical Location & Seq
Reverse (-)
4629203 .. 4630821
1619 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13510.1

Sequence Viewer

Length: 1143 bp
ATGTATGTTACGAGGTGTTTGTCAGAGTACCAGAGAAATCCAGCAGAGCTAAGACAGCCTCCTCCTGAGGGTCCAAACTCTGGAATTTTGGTAATACAAGACCAACACTCACAGACACGTCCATGTTGCTTCGGCTTGTGTTTGGTTGTGGACTCGTATCTAAGTGGTTTGCCCTTGCCGCAAAATCTTAAGCTAGCAGCCAGATTCAATGCTGGAGAAGATGACGCTACTTGTGACCCAGTTGTCTTCATTCCTGTTCTCAATAAGCCTCTATCTTCAAACTGTTACTACGCTATCAAACGAGTGGGGAAGCATTCAGGAGAAGCGCCTGCTAGTGGGAAAGAGGAAGACAGAGTCCCGTGCTGCTTTTGCTCTAGTTATGTTCCTGAAGCCAAACCAAAACAGCTAGATCCTTATGACATGTATCAACAATTCATGATCCACCAAAAGAAACCATCCTCGCGCTACTACTACGCGACATCTGTTGCGCCTGACGGAGTCTCACCATGGTTCCTTAAGAAAAATAAGTGGACAGTCGAATACTCAAGGTTCCAAGACTTTGAACTGAAAGATGATGCAAAAGGACTAAACACAGAGCTTCGTACCGAGCTTCCCGGTCTTGGTATGAGTGTTGTGGTTGGGAAGTGGTACGTCCCTTTTATATTTGTGAAGGAAAGAGACGTAGAGGATCAGATCAAGAGATCGATGTACTACAGCATGACTCTTGAACAAAGATGGGAAGAAGTTTTCTCTTATGAGAAGGATAAAAGCCGAAACTATGATGTTTTAGTTGATGTAGAGTTAGATACTGAAGTTGTTAAGGTTGATGGACAAGAGATTTCAAGAGGTGTGGAAGCAAATGGGTTTGTCTGGTTTGCGGTTGGAGACAAAAAGATTGGTTTAGGATCAGTTGTTGTTGAGAGGATGAAATGGGAAGAAGAGAGATTCGGGTGGACTGGCAAAGGCGACAATGAGCGATCAATGGTAGCTAAGAGATTGGAGAAATCAACAGATGGTAGCTTGTTGAAGAATCGTCATTGTTATGTTCTGGTAGAGTGCTTTGTCTTGAAGAGAATGGATGAGAGTTTGGTCTTAACATATGAGTTTACACACGTCGATAAGCTCAAAACCAAATGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

380

Amino Acids

43.74

Weight (kDa)

5.92

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 123 9.1e-35 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AccB7I CCANNNNNTGG 1 cut(s) 80
AccII CGCG 2 cut(s) 463, 476
AciI CCGC 2 cut(s) 179, 878
AclWI GGATC 4 cut(s) 404, 433, 696, 913
AcsI RAATTY 1 cut(s) 84
AcuI CTGAAG 2 cut(s) 408, 831
AfaI GTAC 4 cut(s) 29, 604, 650, 710
AfiI CCNNNNNNNGG 4 cut(s) 68, 80, 335, 620
AflII CTTAAG 2 cut(s) 188, 515
AflIII ACRYGT 3 cut(s) 116, 420, 1111
AgsI TTSAA 7 cut(s) 208, 279, 563, 728, 843, 1027, 1069
AjiI CACGTC 2 cut(s) 119, 1114
AluBI AGCT 8 cut(s) 49, 193, 406, 598, 610, 989, 1020, 1123
AluI AGCT 8 cut(s) 49, 193, 406, 598, 610, 989, 1020, 1123
Alw26I GTCTC 3 cut(s) 505, 672, 879
AlwI GGATC 4 cut(s) 404, 433, 696, 913
ApeKI GCWGC 2 cut(s) 197, 363
ApoI RAATTY 1 cut(s) 84
AspLEI GCGC 3 cut(s) 328, 465, 490
AspS9I GGNCC 1 cut(s) 71
AsuC2I CCSGG 1 cut(s) 615
AsuHPI GGTGA 1 cut(s) 495
AsuNHI GCTAGC 1 cut(s) 193
AvaII GGWCC 1 cut(s) 71
AxyI CCTNAGG 1 cut(s) 66
BaeI ACNNNNGTAYC 2 cut(s) 798, 831
BbsI GAAGAC 2 cut(s) 238, 354
BbvI GCAGC 2 cut(s) 209, 350
BccI CCATC 4 cut(s) 463, 729, 821, 1007
BcnI CCSGG 1 cut(s) 615
BcoDI GTCTC 3 cut(s) 505, 672, 879
BfaI CTAG 4 cut(s) 194, 333, 375, 407
BfmI CTRYAG 1 cut(s) 712
BfoI RGCGCY 1 cut(s) 329
BfrI CTTAAG 2 cut(s) 188, 515
BisI GCNGC 3 cut(s) 179, 198, 364
BlsI GCNGC 3 cut(s) 180, 199, 365
Bme1390I CCNGG 1 cut(s) 615
Bme18I GGWCC 1 cut(s) 71
BmgBI CACGTC 2 cut(s) 119, 1114
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 3 cut(s) 72, 512, 551
BmrFI CCNGG 1 cut(s) 615
BmrI ACTGGG 1 cut(s) 233
BmsI GCATC 1 cut(s) 565
BmtI GCTAGC 1 cut(s) 197
BmuI ACTGGG 1 cut(s) 233
BpiI GAAGAC 2 cut(s) 238, 354
BpmI CTGGAG 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 529
BpuMI CCSGG 1 cut(s) 615
Bsa29I ATCGAT 1 cut(s) 704
BsaJI CCNNGG 1 cut(s) 506
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 80, 335, 620
Bse1I ACTGG 2 cut(s) 239, 961
Bse21I CCTNAGG 1 cut(s) 66
BseCI ATCGAT 1 cut(s) 704
BseDI CCNNGG 1 cut(s) 506
BseGI GGATG 3 cut(s) 455, 930, 1084
BseLI CCNNNNNNNGG 4 cut(s) 68, 80, 335, 620
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 2 cut(s) 239, 961
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 2 cut(s) 209, 350
Bsh1236I CGCG 2 cut(s) 463, 476
BshVI ATCGAT 1 cut(s) 704
BsiSI CCGG 1 cut(s) 615
BslFI GGGAC 2 cut(s) 341, 638
BslI CCNNNNNNNGG 4 cut(s) 68, 80, 335, 620
BsmAI GTCTC 3 cut(s) 505, 672, 879
BsmBI CGTCTC 1 cut(s) 672
BsmFI GGGAC 2 cut(s) 341, 638
BsmI GAATGC 1 cut(s) 313
Bsp143I GATC 7 cut(s) 409, 438, 688, 693, 701, 905, 977
Bsp19I CCATGG 1 cut(s) 506
BspACI CCGC 2 cut(s) 179, 878
BspCNI CTCAG 1 cut(s) 58
BspDI ATCGAT 1 cut(s) 704
BspFNI CGCG 2 cut(s) 463, 476
BspHI TCATGA 1 cut(s) 435
BspLI GGNNCC 3 cut(s) 72, 512, 551
BspOI GCTAGC 1 cut(s) 197
BspPI GGATC 4 cut(s) 404, 433, 696, 913
BspTI CTTAAG 2 cut(s) 188, 515
BsrI ACTGG 2 cut(s) 239, 961
BssECI CCNNGG 1 cut(s) 506
BssMI GATC 7 cut(s) 409, 438, 688, 693, 701, 905, 977
BssT1I CCWWGG 1 cut(s) 506
Bst4CI ACNGT 2 cut(s) 284, 535
Bst6I CTCTTC 2 cut(s) 933, 1064
BstAFI CTTAAG 2 cut(s) 188, 515
BstC8I GCNNGC 2 cut(s) 195, 330
BstDEI CTNAG 4 cut(s) 50, 66, 161, 990
BstDSI CCRYGG 1 cut(s) 506
BstF5I GGATG 3 cut(s) 455, 930, 1084
BstFNI CGCG 2 cut(s) 463, 476
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 3 cut(s) 328, 465, 490
BstKTI GATC 7 cut(s) 412, 441, 691, 696, 704, 908, 980
BstMAI GTCTC 3 cut(s) 505, 672, 879
BstMBI GATC 7 cut(s) 409, 438, 688, 693, 701, 905, 977
BstMWI GCNNNNNNNGC 3 cut(s) 55, 178, 369
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 1 cut(s) 613
BstSFI CTRYAG 1 cut(s) 712
BstUI CGCG 2 cut(s) 463, 476
BstV1I GCAGC 2 cut(s) 209, 350
BstV2I GAAGAC 2 cut(s) 238, 354
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
Bsu15I ATCGAT 1 cut(s) 704
Bsu36I CCTNAGG 1 cut(s) 66
BsuTUI ATCGAT 1 cut(s) 704
BtgI CCRYGG 1 cut(s) 506
BtrI CACGTC 2 cut(s) 119, 1114
BtsCI GGATG 3 cut(s) 455, 930, 1084
Cac8I GCNNGC 2 cut(s) 195, 330
CciI TCATGA 1 cut(s) 435
CfoI GCGC 3 cut(s) 328, 465, 490
Cfr13I GGNCC 1 cut(s) 71
ClaI ATCGAT 1 cut(s) 704
CseI GACGC 1 cut(s) 233
Csp6I GTAC 4 cut(s) 28, 603, 649, 709
CspCI CAANNNNNGTGG 2 cut(s) 831, 866
CviAII CATG 5 cut(s) 123, 421, 436, 507, 718
CviQI GTAC 4 cut(s) 28, 603, 649, 709
DdeI CTNAG 4 cut(s) 50, 66, 161, 990
DpnI GATC 7 cut(s) 411, 440, 690, 695, 703, 907, 979
DpnII GATC 7 cut(s) 409, 438, 688, 693, 701, 905, 977
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
Eam1104I CTCTTC 2 cut(s) 933, 1064
EarI CTCTTC 2 cut(s) 933, 1064
Eco130I CCWWGG 1 cut(s) 506
Eco47I GGWCC 1 cut(s) 71
Eco57I CTGAAG 2 cut(s) 408, 831
Eco81I CCTNAGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 506
ErhI CCWWGG 1 cut(s) 506
Esp3I CGTCTC 1 cut(s) 672
FaeI CATG 5 cut(s) 126, 424, 439, 510, 721
FaqI GGGAC 2 cut(s) 341, 638
FatI CATG 5 cut(s) 122, 420, 435, 506, 717
FauNDI CATATG 1 cut(s) 1099
Fnu4HI GCNGC 3 cut(s) 179, 198, 364
FokI GGATG 3 cut(s) 442, 937, 1091
Fsp4HI GCNGC 3 cut(s) 179, 198, 364
FspBI CTAG 4 cut(s) 194, 333, 375, 407
GlaI GCGC 3 cut(s) 327, 464, 489
GluI GCNGC 3 cut(s) 179, 198, 364
GsuI CTGGAG 1 cut(s) 234
HaeII RGCGCY 1 cut(s) 329
HapII CCGG 1 cut(s) 615
HgaI GACGC 1 cut(s) 233
HhaI GCGC 3 cut(s) 328, 465, 490
Hin1II CATG 5 cut(s) 126, 424, 439, 510, 721
Hin6I GCGC 3 cut(s) 326, 463, 488
HinP1I GCGC 3 cut(s) 326, 463, 488
HinfI GANTC 7 cut(s) 152, 204, 354, 498, 721, 945, 1030
HpaII CCGG 1 cut(s) 615
HphI GGTGA 1 cut(s) 495
Hpy166II GTNNAC 4 cut(s) 151, 531, 954, 1107
Hpy188I TCNGA 2 cut(s) 25, 693
Hpy188III TCNNGA 9 cut(s) 65, 81, 318, 386, 436, 697, 725, 843, 1066
Hpy8I GTNNAC 4 cut(s) 151, 531, 954, 1107
Hpy99I CGWCG 1 cut(s) 1118
HpyAV CCTTC 2 cut(s) 664, 754
HpyCH4III ACNGT 2 cut(s) 284, 535
HpyCH4IV ACGT 4 cut(s) 118, 651, 681, 1113
HpyCH4V TGCA 1 cut(s) 578
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 178, 369
HpyF3I CTNAG 4 cut(s) 50, 66, 161, 990
HpySE526I ACGT 4 cut(s) 118, 651, 681, 1113
Hsp92II CATG 5 cut(s) 126, 424, 439, 510, 721
HspAI GCGC 3 cut(s) 326, 463, 488
Kzo9I GATC 7 cut(s) 409, 438, 688, 693, 701, 905, 977
Lsp1109I GCAGC 2 cut(s) 209, 350
LweI GCATC 1 cut(s) 565
MaeI CTAG 4 cut(s) 194, 333, 375, 407
MaeII ACGT 4 cut(s) 118, 651, 681, 1113
MaeIII GTNAC 3 cut(s) 7, 233, 284
MalI GATC 7 cut(s) 411, 440, 690, 695, 703, 907, 979
MboI GATC 7 cut(s) 409, 438, 688, 693, 701, 905, 977
MboII GAAGA 9 cut(s) 230, 238, 267, 359, 752, 947, 950, 1039, 1081
MflI RGATCY 1 cut(s) 409
MluCI AATT 2 cut(s) 84, 431
MlyI GAGTC 4 cut(s) 146, 363, 507, 715
MmeI TCCRAC 1 cut(s) 862
MseI TTAA 5 cut(s) 189, 516, 819, 1094, 1141
MslI CAYNNNNRTG 2 cut(s) 121, 1041
MspCI CTTAAG 2 cut(s) 188, 515
MspI CCGG 1 cut(s) 615
MspR9I CCNGG 1 cut(s) 615
Mva1269I GAATGC 1 cut(s) 313
MvnI CGCG 2 cut(s) 463, 476
MwoI GCNNNNNNNGC 3 cut(s) 55, 178, 369
NciI CCSGG 1 cut(s) 615
NcoI CCATGG 1 cut(s) 506
NdeI CATATG 1 cut(s) 1099
NdeII GATC 7 cut(s) 409, 438, 688, 693, 701, 905, 977
NheI GCTAGC 1 cut(s) 193
NlaIII CATG 5 cut(s) 126, 424, 439, 510, 721
NlaIV GGNNCC 3 cut(s) 72, 512, 551
NmuCI GTSAC 1 cut(s) 233
NspI RCATGY 1 cut(s) 424
PagI TCATGA 1 cut(s) 435
PciI ACATGT 1 cut(s) 420
PctI GAATGC 1 cut(s) 313
PfeI GAWTC 3 cut(s) 204, 945, 1030
PflFI GACNNNGTC 2 cut(s) 353, 497
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 3 cut(s) 180, 199, 365
PleI GAGTC 4 cut(s) 146, 362, 506, 715
PpsI GAGTC 4 cut(s) 146, 362, 506, 715
PscI ACATGT 1 cut(s) 420
PspN4I GGNNCC 3 cut(s) 72, 512, 551
PspPI GGNCC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 409
PsyI GACNNNGTC 2 cut(s) 353, 497
RsaI GTAC 4 cut(s) 29, 604, 650, 710
RsaNI GTAC 4 cut(s) 28, 603, 649, 709
RseI CAYNNNNRTG 2 cut(s) 121, 1041
SaqAI TTAA 5 cut(s) 189, 516, 819, 1094, 1141
SatI GCNGC 3 cut(s) 179, 198, 364
Sau3AI GATC 7 cut(s) 409, 438, 688, 693, 701, 905, 977
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 4 cut(s) 146, 363, 507, 715
ScrFI CCNGG 1 cut(s) 615
SfaNI GCATC 1 cut(s) 565
SfcI CTRYAG 1 cut(s) 712
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 2 cut(s) 121, 1041
SmlI CTYRAG 3 cut(s) 188, 515, 544
SmoI CTYRAG 3 cut(s) 188, 515, 544
Sse9I AATT 2 cut(s) 84, 431
SsiI CCGC 2 cut(s) 179, 878
SspMI CTAG 4 cut(s) 194, 333, 375, 407
StyD4I CCNGG 1 cut(s) 613
StyI CCWWGG 1 cut(s) 506
TaaI ACNGT 2 cut(s) 284, 535
TaiI ACGT 4 cut(s) 121, 654, 684, 1116
TaqI TCGA 3 cut(s) 537, 704, 1116
TasI AATT 2 cut(s) 84, 431
TatI WGTACW 1 cut(s) 708
TauI GCSGC 1 cut(s) 181
TfiI GAWTC 3 cut(s) 204, 945, 1030
Tru1I TTAA 5 cut(s) 189, 516, 819, 1094, 1141
Tru9I TTAA 5 cut(s) 189, 516, 819, 1094, 1141
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 2 cut(s) 197, 363
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 3 cut(s) 238, 424, 941
TspGWI ACGGA 1 cut(s) 510
Tth111I GACNNNGTC 2 cut(s) 353, 497
Van91I CCANNNNNTGG 1 cut(s) 80
Vha464I CTTAAG 2 cut(s) 188, 515
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 1 cut(s) 84
XceI RCATGY 1 cut(s) 424
XspI CTAG 4 cut(s) 194, 333, 375, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.