Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002710

Physical Location & Seq

Genomic Coordinates Reverse (-)

29174228 .. 29175824

Gene Structure 1597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGACAAGCATACACCAGTTCGCCAGAGGAGGAGGACATGGGAACCTGCTGCTTCCACACTTATGTTCGAGCAGATCGAGATGTAGCACCACAACCCTTAAATCATAATAACATACGACAGCAATTTCAGGTCCAACGCAAAGGGAGATTTAACCAAATTGGTGGTTTTGTTGCCAAAGCCATAGCTTCGGATGAGTTTCCTCCAAAATTTCTTGCAAGAATAGGGTGGGACATATATACCTCAACTCCACGTGACTTCCATTTAGATGAAGCACCAGGTCTAGACTCTGCACTACGTGCCCGCCTACCCGATTTCAACTTTGAAGTATCGAGTGCAGGCTCAAAGCCTGTGGTTGTGGGGAAGTGGTATTGTCCCTTCATGTTTGTTAAGGAAGGATCACTAACACTGAAAGATCAAATGAGCTGCACAAGGTATTATGAGATGACACTCGAGCAAAGATGGGAGCAAATATTTGCATGTGACAGTGATGCAAGTGAGGAAAATAATGCTGTGGTTGTCGATGTTTCTGTTGAAAATGAATTTGTTACCATTGCTGGAAATAATGTGGAAGCAGTGAATGAGGAGAAGGATGTGGCTAATGGGGTAATGTGGTATAGGGTTTTTAACAAAGTTGGAGGAGAGAGCACTGTAGGGGTGAGCTTAGCGGTTTTAGAGAGGGTGAAGTGGGAGCAACAAAGGTTTGGATGGAATGGAGGGAATGAGAGGAAAGTGAGAGTGAAGATAGTAGAGGAGTTTGGGGGTATGGGAAGGTGGAAGAAATTTGGTTGCTATGTGTTGGGGGAGAGGTTTGTATTGAAAAGAATGGATGGAAGCTTGGTACTAACTTTGGGTTTCAGACACACTAATCACATTAGGAGCAAATGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

298

Amino Acids

33.88

Weight (kDa)

6.05

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13470 AT1G13480 AT1G13490 AT1G13490 AT1G13500 AT1G13510 AT1G13520 AT1G13530 AT1G13540 AT1G13550
fragaria_vesca	FvH4_4g28550 FvH4_4g28552 FvH4_4g28553
malus_domestica	MD13G1051700.v1.1 MD13G1051900.v1.1 MD13G1052000.v1.1 MD16G1057800.v1.1
prunus_persica	Prupe.1G300000_v2.0.a1 Prupe.1G300100_v2.0.a1
pyrus_communis	pycom13g04620 pycom16g05060
rosa_chinensis	RchiOBHm_Chr4g0436651 RchiOBHm_Chr4g0436661
rosa_multiflora	Rmu_sc0003130.1_g000017 Rmu_sc0003130.1_g000018
rosa_roxburghii	Rroxscaffold_5G00377730 Rroxscaffold_5G00377740
rosa_rugosa	Rorug04G0294900 Rorug04G0295000
rosa_samantha	Rh4AG349400 Rh4AG349500 Rh4BG358100 Rh4BG358200 Rh4CG372500 Rh4CG372600 Rh4DG352300 Rh4DG352400
rosa_wichuraiana	Rw4G030560 Rw4G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	56
AciI	CCGC	2 cut(s)	304, 668
AclWI	GGATC	1 cut(s)	406
AcsI	RAATTY	3 cut(s)	209, 542, 782
AcvI	CACGTG	1 cut(s)	254
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	1 cut(s)	843
AgsI	TTSAA	4 cut(s)	319, 326, 536, 820
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	4 cut(s)	188, 426, 663, 837
AluI	AGCT	4 cut(s)	188, 426, 663, 837
Alw21I	GWGCWC	1 cut(s)	650
AlwI	GGATC	1 cut(s)	406
Ama87I	CYCGRG	1 cut(s)	452
ApeKI	GCWGC	2 cut(s)	51, 426
ApoI	RAATTY	3 cut(s)	209, 542, 782
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	670, 694
AvaI	CYCGRG	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	304
BarI	GAAGNNNNNNTAC	2 cut(s)	362, 394
BbrPI	CACGTG	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	650
BbvI	GCAGC	2 cut(s)	38, 413
BccI	CCATC	3 cut(s)	456, 702, 824
BciT130I	CCWGG	1 cut(s)	279
BfaI	CTAG	1 cut(s)	284
BfmI	CTRYAG	1 cut(s)	651
BfuAI	ACCTGC	1 cut(s)	56
BisI	GCNGC	2 cut(s)	52, 427
BlpI	GCTNAGC	1 cut(s)	664
BlsI	GCNGC	2 cut(s)	53, 428
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	481
Bpu1102I	GCTNAGC	1 cut(s)	664
BsaAI	YACGTR	2 cut(s)	254, 299
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bse1I	ACTGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	279
BseGI	GGATG	4 cut(s)	199, 598, 713, 835
BseMI	GCAATG	1 cut(s)	552
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	5 cut(s)	44, 47, 599, 654, 767
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	2 cut(s)	38, 413
BsgI	GTGCAG	3 cut(s)	276, 357, 412
BsiHKAI	GWGCWC	1 cut(s)	650
BsiHKCI	CYCGRG	1 cut(s)	452
BslFI	GGGAC	3 cut(s)	18, 245, 360
BsmFI	GGGAC	3 cut(s)	18, 245, 360
BsoBI	CYCGRG	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	304, 650
Bsp143I	GATC	3 cut(s)	76, 398, 415
Bsp1720I	GCTNAGC	1 cut(s)	664
BspACI	CCGC	2 cut(s)	304, 668
BspLI	GGNNCC	1 cut(s)	46
BspMI	ACCTGC	1 cut(s)	56
BspPI	GGATC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	18
BssMI	GATC	3 cut(s)	76, 398, 415
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	488, 652
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstBAI	YACGTR	2 cut(s)	254, 299
BstC8I	GCNNGC	2 cut(s)	304, 340
BstDEI	CTNAG	1 cut(s)	664
BstF5I	GGATG	4 cut(s)	199, 598, 713, 835
BstKTI	GATC	3 cut(s)	79, 401, 418
BstMBI	GATC	3 cut(s)	76, 398, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	651
BstSLI	GKGCMC	1 cut(s)	304
BstV1I	GCAGC	2 cut(s)	38, 413
BstXI	CCANNNNNNTGG	1 cut(s)	164
BtsCI	GGATG	4 cut(s)	199, 598, 713, 835
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	4 cut(s)	407, 493, 582, 648
BveI	ACCTGC	1 cut(s)	56
Cac8I	GCNNGC	2 cut(s)	304, 340
Cfr13I	GGNCC	1 cut(s)	133
CsiI	ACCWGGT	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	842
CspCI	CAANNNNNGTGG	2 cut(s)	333, 368
CviAII	CATG	3 cut(s)	40, 382, 480
CviJI	RGCY	8 cut(s)	182, 188, 342, 349, 426, 599, 663, 837
CviKI_1	RGCY	8 cut(s)	182, 188, 342, 349, 426, 599, 663, 837
CviQI	GTAC	1 cut(s)	842
DdeI	CTNAG	1 cut(s)	664
DpnI	GATC	3 cut(s)	78, 400, 417
DpnII	GATC	3 cut(s)	76, 398, 415
DraIII	CACNNNGTG	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	133
Eco72I	CACGTG	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	277
FaeI	CATG	3 cut(s)	43, 385, 483
FaqI	GGGAC	3 cut(s)	18, 245, 360
FatI	CATG	3 cut(s)	39, 381, 479
FauI	CCCGC	1 cut(s)	311
Fnu4HI	GCNGC	2 cut(s)	52, 427
FokI	GGATG	4 cut(s)	206, 605, 720, 842
Fsp4HI	GCNGC	2 cut(s)	52, 427
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	2 cut(s)	52, 427
Hin1II	CATG	3 cut(s)	43, 385, 483
HindIII	AAGCTT	1 cut(s)	835
HinfI	GANTC	1 cut(s)	287
HphI	GGTGA	2 cut(s)	670, 694
Hpy188I	TCNGA	2 cut(s)	193, 860
Hpy188III	TCNNGA	2 cut(s)	80, 284
HpyAV	CCTTC	4 cut(s)	388, 389, 583, 765
HpyCH4III	ACNGT	2 cut(s)	488, 652
HpyCH4IV	ACGT	2 cut(s)	253, 298
HpyCH4V	TGCA	6 cut(s)	218, 293, 338, 429, 479, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	664
HpySE526I	ACGT	2 cut(s)	253, 298
Hsp92II	CATG	3 cut(s)	43, 385, 483
Kzo9I	GATC	3 cut(s)	76, 398, 415
LmnI	GCTCC	3 cut(s)	466, 691, 879
LpnPI	CCDG	9 cut(s)	31, 39, 61, 116, 264, 291, 324, 363, 543
Lsp1109I	GCAGC	2 cut(s)	38, 413
LweI	GCATC	1 cut(s)	481
MabI	ACCWGGT	1 cut(s)	277
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	2 cut(s)	253, 298
MaeIII	GTNAC	3 cut(s)	254, 482, 547
MalI	GATC	3 cut(s)	78, 400, 417
MboI	GATC	3 cut(s)	76, 398, 415
MboII	GAAGA	2 cut(s)	754, 790
MhlI	GDGCHC	2 cut(s)	304, 650
MluCI	AATT	5 cut(s)	125, 159, 209, 542, 782
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	2 cut(s)	160, 616
MseI	TTAA	4 cut(s)	101, 153, 390, 627
MslI	CAYNNNNRTG	2 cut(s)	63, 267
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	3 cut(s)	76, 398, 415
NlaIII	CATG	3 cut(s)	43, 385, 483
NlaIV	GGNNCC	1 cut(s)	46
NmuCI	GTSAC	2 cut(s)	254, 482
NspI	RCATGY	1 cut(s)	483
PaeR7I	CTCGAG	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	53, 428
PleI	GAGTC	1 cut(s)	281
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	281
Ppu21I	YACGTR	2 cut(s)	254, 299
Psp6I	CCWGG	1 cut(s)	277
PspCI	CACGTG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	133
PspXI	VCTCGAGB	1 cut(s)	452
RsaI	GTAC	1 cut(s)	843
RsaNI	GTAC	1 cut(s)	842
RseI	CAYNNNNRTG	2 cut(s)	63, 267
SaqAI	TTAA	4 cut(s)	101, 153, 390, 627
SatI	GCNGC	2 cut(s)	52, 427
Sau3AI	GATC	3 cut(s)	76, 398, 415
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	2 cut(s)	304, 650
SexAI	ACCWGGT	1 cut(s)	277
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	651
Sfr274I	CTCGAG	1 cut(s)	452
SinI	GGWCC	1 cut(s)	133
SlaI	CTCGAG	1 cut(s)	452
SmiMI	CAYNNNNRTG	2 cut(s)	63, 267
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	5 cut(s)	125, 159, 209, 542, 782
SsiI	CCGC	2 cut(s)	304, 668
SspI	AATATT	1 cut(s)	474
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	277
TaaI	ACNGT	2 cut(s)	488, 652
TaiI	ACGT	2 cut(s)	256, 301
TaqI	TCGA	5 cut(s)	70, 79, 332, 453, 522
TasI	AATT	5 cut(s)	125, 159, 209, 542, 782
Tru1I	TTAA	4 cut(s)	101, 153, 390, 627
Tru9I	TTAA	4 cut(s)	101, 153, 390, 627
TscAI	CASTG	4 cut(s)	414, 493, 582, 655
TseFI	GTSAC	2 cut(s)	254, 482
TseI	GCWGC	2 cut(s)	51, 426
Tsp45I	GTSAC	2 cut(s)	254, 482
TspDTI	ATGAA	3 cut(s)	285, 370, 555
TspRI	CASTG	4 cut(s)	414, 493, 582, 655
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	3 cut(s)	209, 542, 782
XbaI	TCTAGA	1 cut(s)	283
XceI	RCATGY	1 cut(s)	483
XhoI	CTCGAG	1 cut(s)	452
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.