Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002710

Physical Location & Seq

Genomic Coordinates Reverse (-)

3688094 .. 3688416

Gene Structure 323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1051700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGCCGTGGTGGTTGATGTTTTCGTTGAAAACGAGTCTGTTGCTGTTGGCGGGAACGCGGAAGCTGTGCATGAGGAGATGTATGTGGGCAATTGTGGAGAGGATGAAGTGGGAGCAACAAAGGTTTGGAAGGTTTGGAGGGAATGAGAGGCAAGTGAGAGTGAAAAGGTTAGAGGAGTTTGGAGGGGTGGGTAAGTGGATAAAATTTGGTTGCTATGTTTTGGTACAGAGGTTTGTGTTGAAAAGAATGGATGGAAGCTTGTGTGGCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

91

Amino Acids

10.79

Weight (kDa)

10.92

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13470 AT1G13480 AT1G13490 AT1G13490 AT1G13500 AT1G13510 AT1G13520 AT1G13530 AT1G13540 AT1G13550
fragaria_vesca	FvH4_4g28550 FvH4_4g28552 FvH4_4g28553
malus_domestica	MD13G1051700.v1.1 MD13G1051900.v1.1 MD13G1052000.v1.1 MD16G1057800.v1.1
prunus_persica	Prupe.1G300000_v2.0.a1 Prupe.1G300100_v2.0.a1
pyrus_communis	pycom13g04620 pycom16g05060
rosa_chinensis	RchiOBHm_Chr4g0436651 RchiOBHm_Chr4g0436661
rosa_multiflora	Rmu_sc0003130.1_g000017 Rmu_sc0003130.1_g000018
rosa_roxburghii	Rroxscaffold_5G00377730 Rroxscaffold_5G00377740
rosa_rugosa	Rorug04G0294900 Rorug04G0295000
rosa_samantha	Rh4AG349400 Rh4AG349500 Rh4BG358100 Rh4BG358200 Rh4CG372500 Rh4CG372600 Rh4DG352300 Rh4DG352400
rosa_wichuraiana	Rw4G030560 Rw4G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	58
AciI	CCGC	2 cut(s)	50, 58
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	203
AfaI	GTAC	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	28, 241
AluBI	AGCT	2 cut(s)	64, 258
AluI	AGCT	2 cut(s)	64, 258
AoxI	GGCC	1 cut(s)	265
ApoI	RAATTY	1 cut(s)	203
BaeI	ACNNNNGTAYC	2 cut(s)	215, 248
BccI	CCATC	1 cut(s)	245
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BsaJI	CCNNGG	1 cut(s)	5
Bse118I	RCCGGY	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	2 cut(s)	108, 256
BseRI	GAGGAG	2 cut(s)	88, 188
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	268
BsnI	GGCC	1 cut(s)	267
BspACI	CCGC	2 cut(s)	50, 58
BspANI	GGCC	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	58
BsrFI	RCCGGY	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	5
BstDSI	CCRYGG	1 cut(s)	5
BstF5I	GGATG	2 cut(s)	108, 256
BstFNI	CGCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstUI	CGCG	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	108, 256
Cfr10I	RCCGGY	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	3 cut(s)	64, 258, 267
CviKI_1	RGCY	3 cut(s)	64, 258, 267
CviQI	GTAC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	265
FaeI	CATG	1 cut(s)	73
FaiI	YATR	3 cut(s)	71, 83, 216
FatI	CATG	1 cut(s)	69
FauI	CCCGC	1 cut(s)	43
FokI	GGATG	2 cut(s)	115, 263
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	268
Hin1II	CATG	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	1 cut(s)	34
HpaII	CCGG	1 cut(s)	268
HpyAV	CCTTC	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	69
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	112
MfeI	CAATTG	1 cut(s)	90
MluCI	AATT	2 cut(s)	90, 203
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	7 cut(s)	66, 93, 131, 141, 166, 176, 222
MspI	CCGG	1 cut(s)	268
MunI	CAATTG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	264
NlaIII	CATG	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	43
SetI	ASST	6 cut(s)	66, 125, 134, 170, 233, 260
SgeI	CNNG	6 cut(s)	18, 45, 63, 69, 82, 164
Sse9I	AATT	2 cut(s)	90, 203
SsiI	CCGC	2 cut(s)	50, 58
TasI	AATT	2 cut(s)	90, 203
TspDTI	ATGAA	1 cut(s)	119
XapI	RAATTY	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.