Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002710

Physical Location & Seq

Genomic Coordinates Forward (+)

29492102 .. 29493807

Gene Structure 1706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G300000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTATGTGACAAGGCCTCTTTCCATGTTCAAAAACTCCCCTGCTGATCTCTCATTGCCTCCACCGGAGGGTCCAAACTCTGGTATTCTTGTCGTCCAAGATGAAGAAGCTACATGCTGTTTTGGGTTATTCAACAGCGAGATGATCAAAGACCTGCCTCTCCCTCAGAACAAGAACCTGGAGCTTTACTATGCAACAGGGTTTTATCCCAACAGAAATATGCGTTTCCACAAAGTTTTCTTCATCCCAGTTCTTAATCAGCCTTTGTCTTCCAACCGCTACTATGCAATATATCCATATGGGAAGGATAGAGGGGAAGGCTACACAAGCTCAAAAGAGGAGGATTTGGAAATGGACACGTGCTGTTTTGCAGGTCGTAACGATGTACTACCGCAGCATTTTGATCCCCGGAACTTACATCAGCAATATGAGATTCATCTTCAAACAAGAATCATTAATGTGTCAGGTGGTTTTGTAGCCAAATCAATGGCTCAAGATGGGTTTCCTCCAGAGGCATTGTGGAGGAAAGGGTGGAAACTCAAAAGCTCAACGTTGAATGAATTCGAACTTGGTGATGCACCAGGACTAGACACCGCCCTCCGTGCCCGTCTTCCAGATTTCAATTTCCCACTAAAGCCTGTGGTTGTAGGGAAGTGGTATTGTCCCTTCATGTTTGTTAAGGAAGGGACACCAAAATCTTTGAGAGATGAAAGAACCAGGGCAATGTATTATGAGATGACACTTGAGCAGAAGTGGGAACAAATATTTGCAAGGGATCATCATAGTAACCACCATGATCAAAGCAATGCTGTGGCTGTGGATGCTGTTGTGCAAAGTGAAGTGGTTATGGTTGCAGGGAGGGAAGCTGTGTGTGATGAGAGAAGTGTGGGTGATGGGGTGATGGAGTTTAGGAGTTTGAACAATGTTGGAGAAGAGACAAGGGTTGGGGTGAGCTTAGCAATTGTTGAGAGAATGAAGTGGGAGCAAGGAAGGGTTGGGTGGGTTGGTGGGGATGATGAAGGTCTAGTGAGAGTGCAGAGGGTAGAGGAATATGAGGGGAAGGGTGAGTGGAACAAGTTTGGTTGTTTTGTATTGACTGAGAGGTTTGCTTTGAAAAGAATGGATGGAAGCTTGGTATTTACCCATGATTTCAAGCACACTCATCAGATTAGGAGCAAATGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

396

Amino Acids

45.36

Weight (kDa)

5.84

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13470 AT1G13480 AT1G13490 AT1G13490 AT1G13500 AT1G13510 AT1G13520 AT1G13530 AT1G13540 AT1G13550
fragaria_vesca	FvH4_4g28550 FvH4_4g28552 FvH4_4g28553
malus_domestica	MD13G1051700.v1.1 MD13G1051900.v1.1 MD13G1052000.v1.1 MD16G1057800.v1.1
prunus_persica	Prupe.1G300000_v2.0.a1 Prupe.1G300100_v2.0.a1
pyrus_communis	pycom13g04620 pycom16g05060
rosa_chinensis	RchiOBHm_Chr4g0436651 RchiOBHm_Chr4g0436661
rosa_multiflora	Rmu_sc0003130.1_g000017 Rmu_sc0003130.1_g000018
rosa_roxburghii	Rroxscaffold_5G00377730 Rroxscaffold_5G00377740
rosa_rugosa	Rorug04G0294900 Rorug04G0295000
rosa_samantha	Rh4AG349400 Rh4AG349500 Rh4BG358100 Rh4BG358200 Rh4CG372500 Rh4CG372600 Rh4DG352300 Rh4DG352400
rosa_wichuraiana	Rw4G030560 Rw4G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	162, 362
AccB7I	CCANNNNNTGG	1 cut(s)	80
AciI	CCGC	3 cut(s)	277, 392, 594
AclI	AACGTT	1 cut(s)	551
AclWI	GGATC	2 cut(s)	398, 783
AcsI	RAATTY	1 cut(s)	560
AcvI	CACGTG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	387
AfiI	CCNNNNNNNGG	2 cut(s)	68, 80
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	8 cut(s)	31, 133, 443, 556, 622, 919, 1114, 1153
AjnI	CCWGG	3 cut(s)	177, 580, 716
AjuI	GAANNNNNNNTTGG	2 cut(s)	552, 584
AluBI	AGCT	7 cut(s)	110, 184, 330, 546, 866, 954, 1131
AluI	AGCT	7 cut(s)	110, 184, 330, 546, 866, 954, 1131
Alw26I	GTCTC	1 cut(s)	929
AlwI	GGATC	2 cut(s)	398, 783
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	394
ApoI	RAATTY	1 cut(s)	560
AseI	ATTAAT	1 cut(s)	456
Asp700I	GAANNNNTTC	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	71
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	5 cut(s)	584, 902, 910, 961, 1076
AsuII	TTCGAA	1 cut(s)	564
AvaII	GGWCC	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	607
BarI	GAAGNNNNNNTAC	2 cut(s)	650, 682
BbrPI	CACGTG	1 cut(s)	360
BbsI	GAAGAC	2 cut(s)	261, 602
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	4 cut(s)	491, 887, 895, 1118
BciT130I	CCWGG	3 cut(s)	179, 582, 718
BclI	TGATCA	2 cut(s)	144, 796
BcnI	CCSGG	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	929
BfaI	CTAG	2 cut(s)	587, 1025
BfuAI	ACCTGC	2 cut(s)	162, 362
BisI	GCNGC	1 cut(s)	395
BlpI	GCTNAGC	1 cut(s)	955
BlsI	GCNGC	1 cut(s)	396
Bme1390I	CCNGG	4 cut(s)	179, 409, 582, 718
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	4 cut(s)	179, 409, 582, 718
BmrI	ACTGGG	1 cut(s)	242
BmsI	GCATC	2 cut(s)	565, 811
BmuI	ACTGGG	1 cut(s)	242
BpiI	GAAGAC	2 cut(s)	261, 602
BpmI	CTGGAG	2 cut(s)	200, 492
Bpu1102I	GCTNAGC	1 cut(s)	955
Bpu14I	TTCGAA	1 cut(s)	564
BpuEI	CTTGAG	2 cut(s)	477, 764
BpuMI	CCSGG	1 cut(s)	409
BsaAI	YACGTR	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	407, 717
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 80
Bse1I	ACTGG	1 cut(s)	248
Bse3DI	GCAATG	3 cut(s)	53, 729, 811
BseBI	CCWGG	3 cut(s)	179, 582, 718
BseDI	CCNNGG	2 cut(s)	407, 717
BseGI	GGATG	4 cut(s)	243, 826, 1018, 1129
BseLI	CCNNNNNNNGG	2 cut(s)	68, 80
BseMI	GCAATG	3 cut(s)	53, 729, 811
BseMII	CTCAG	2 cut(s)	179, 1089
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	607
BseXI	GCAGC	1 cut(s)	406
BsgI	GTGCAG	1 cut(s)	1055
BshFI	GGCC	1 cut(s)	16
BsiSI	CCGG	2 cut(s)	65, 409
BslFI	GGGAC	2 cut(s)	648, 700
BslI	CCNNNNNNNGG	2 cut(s)	68, 80
BsmAI	GTCTC	1 cut(s)	929
BsmFI	GGGAC	2 cut(s)	648, 700
BsnI	GGCC	1 cut(s)	16
Bsp119I	TTCGAA	1 cut(s)	564
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	5 cut(s)	46, 144, 403, 775, 796
Bsp1720I	GCTNAGC	1 cut(s)	955
BspACI	CCGC	3 cut(s)	277, 392, 594
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	2 cut(s)	178, 1090
BspLI	GGNNCC	1 cut(s)	72
BspMI	ACCTGC	2 cut(s)	162, 362
BspPI	GGATC	2 cut(s)	398, 783
BspT104I	TTCGAA	1 cut(s)	564
BsrDI	GCAATG	3 cut(s)	53, 729, 811
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	407, 717
BssMI	GATC	5 cut(s)	46, 144, 403, 775, 796
Bst2UI	CCWGG	3 cut(s)	179, 582, 718
Bst6I	CTCTTC	1 cut(s)	927
BstBAI	YACGTR	1 cut(s)	360
BstBI	TTCGAA	1 cut(s)	564
BstDEI	CTNAG	3 cut(s)	165, 955, 1098
BstF5I	GGATG	4 cut(s)	243, 826, 1018, 1129
BstKTI	GATC	5 cut(s)	49, 147, 406, 778, 799
BstMAI	GTCTC	1 cut(s)	929
BstMBI	GATC	5 cut(s)	46, 144, 403, 775, 796
BstMWI	GCNNNNNNNGC	3 cut(s)	327, 602, 821
BstNI	CCWGG	3 cut(s)	179, 582, 718
BstNSI	RCATGY	1 cut(s)	117
BstSCI	CCNGG	4 cut(s)	177, 407, 580, 716
BstSLI	GKGCMC	1 cut(s)	607
BstV1I	GCAGC	1 cut(s)	406
BstV2I	GAAGAC	2 cut(s)	261, 602
BstXI	CCANNNNNNTGG	1 cut(s)	487
BsuRI	GGCC	1 cut(s)	16
BtsCI	GGATG	4 cut(s)	243, 826, 1018, 1129
BveI	ACCTGC	2 cut(s)	162, 362
Cfr13I	GGNCC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	386
CviAII	CATG	5 cut(s)	25, 114, 670, 794, 1145
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	3 cut(s)	165, 955, 1098
DpnI	GATC	5 cut(s)	48, 146, 405, 777, 798
DpnII	GATC	5 cut(s)	46, 144, 403, 775, 796
Eam1104I	CTCTTC	1 cut(s)	927
EarI	CTCTTC	1 cut(s)	927
Eco147I	AGGCCT	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	71
Eco72I	CACGTG	1 cut(s)	360
EcoRI	GAATTC	1 cut(s)	560
EcoRII	CCWGG	3 cut(s)	177, 580, 716
FaeI	CATG	5 cut(s)	28, 117, 673, 797, 1148
FaqI	GGGAC	2 cut(s)	648, 700
FatI	CATG	5 cut(s)	24, 113, 669, 793, 1144
FauNDI	CATATG	1 cut(s)	298
FbaI	TGATCA	2 cut(s)	144, 796
Fnu4HI	GCNGC	1 cut(s)	395
FokI	GGATG	4 cut(s)	230, 833, 1025, 1136
Fsp4HI	GCNGC	1 cut(s)	395
FspBI	CTAG	2 cut(s)	587, 1025
GluI	GCNGC	1 cut(s)	395
GsuI	CTGGAG	2 cut(s)	200, 492
HaeIII	GGCC	1 cut(s)	16
HapII	CCGG	2 cut(s)	65, 409
Hin1II	CATG	5 cut(s)	28, 117, 673, 797, 1148
HindIII	AAGCTT	1 cut(s)	1129
HinfI	GANTC	2 cut(s)	433, 450
HpaII	CCGG	2 cut(s)	65, 409
HphI	GGTGA	5 cut(s)	584, 902, 910, 961, 1076
Hpy188I	TCNGA	2 cut(s)	168, 1167
Hpy188III	TCNNGA	3 cut(s)	494, 509, 614
HpyAV	CCTTC	7 cut(s)	298, 311, 676, 677, 984, 1013, 1054
HpyCH4IV	ACGT	2 cut(s)	359, 551
HpyCH4V	TGCA	8 cut(s)	194, 287, 371, 578, 770, 832, 854, 1036
HpyF10VI	GCNNNNNNNGC	3 cut(s)	327, 602, 821
HpyF3I	CTNAG	3 cut(s)	165, 955, 1098
HpySE526I	ACGT	2 cut(s)	359, 551
Hsp92II	CATG	5 cut(s)	28, 117, 673, 797, 1148
Ksp22I	TGATCA	2 cut(s)	144, 796
Kzo9I	GATC	5 cut(s)	46, 144, 403, 775, 796
LmnI	GCTCC	3 cut(s)	181, 982, 1173
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	2 cut(s)	565, 811
MaeI	CTAG	2 cut(s)	587, 1025
MaeII	ACGT	2 cut(s)	359, 551
MaeIII	GTNAC	3 cut(s)	7, 377, 785
MalI	GATC	5 cut(s)	48, 146, 405, 777, 798
MboI	GATC	5 cut(s)	46, 144, 403, 775, 796
MboII	GAAGA	6 cut(s)	116, 232, 261, 431, 602, 944
MfeI	CAATTG	1 cut(s)	960
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	3 cut(s)	560, 622, 960
MmeI	TCCRAC	2 cut(s)	297, 907
MroXI	GAANNNNTTC	1 cut(s)	560
MseI	TTAA	3 cut(s)	255, 456, 678
MslI	CAYNNNNRTG	1 cut(s)	458
MspI	CCGG	2 cut(s)	65, 409
MspR9I	CCNGG	4 cut(s)	179, 409, 582, 718
MunI	CAATTG	1 cut(s)	960
MvaI	CCWGG	3 cut(s)	179, 582, 718
MwoI	GCNNNNNNNGC	3 cut(s)	327, 602, 821
NciI	CCSGG	1 cut(s)	409
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	5 cut(s)	46, 144, 403, 775, 796
NlaIII	CATG	5 cut(s)	28, 117, 673, 797, 1148
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	7
NspI	RCATGY	1 cut(s)	117
NspV	TTCGAA	1 cut(s)	564
PceI	AGGCCT	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	560
PfeI	GAWTC	2 cut(s)	433, 450
PflMI	CCANNNNNTGG	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	396
PmaCI	CACGTG	1 cut(s)	360
PmlI	CACGTG	1 cut(s)	360
Ppu21I	YACGTR	1 cut(s)	360
PshBI	ATTAAT	1 cut(s)	456
Psp1406I	AACGTT	1 cut(s)	551
Psp6I	CCWGG	3 cut(s)	177, 580, 716
PspCI	CACGTG	1 cut(s)	360
PspGI	CCWGG	3 cut(s)	177, 580, 716
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
RseI	CAYNNNNRTG	1 cut(s)	458
SaqAI	TTAA	3 cut(s)	255, 456, 678
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	5 cut(s)	46, 144, 403, 775, 796
Sau96I	GGNCC	1 cut(s)	71
ScrFI	CCNGG	4 cut(s)	179, 409, 582, 718
SduI	GDGCHC	1 cut(s)	607
SfaNI	GCATC	2 cut(s)	565, 811
SfuI	TTCGAA	1 cut(s)	564
SinI	GGWCC	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	458
SmlI	CTYRAG	2 cut(s)	492, 743
SmoI	CTYRAG	2 cut(s)	492, 743
Sse9I	AATT	3 cut(s)	560, 622, 960
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	3 cut(s)	277, 392, 594
SspI	AATATT	1 cut(s)	765
SspMI	CTAG	2 cut(s)	587, 1025
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	4 cut(s)	177, 407, 580, 716
TaiI	ACGT	2 cut(s)	362, 554
TaqI	TCGA	1 cut(s)	564
TasI	AATT	3 cut(s)	560, 622, 960
TatI	WGTACW	1 cut(s)	385
TfiI	GAWTC	2 cut(s)	433, 450
Tru1I	TTAA	3 cut(s)	255, 456, 678
Tru9I	TTAA	3 cut(s)	255, 456, 678
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	1 cut(s)	394
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	8 cut(s)	117, 232, 425, 573, 658, 723, 989, 1032
TspGWI	ACGGA	1 cut(s)	590
Van91I	CCANNNNNTGG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	71
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	1 cut(s)	560
XceI	RCATGY	1 cut(s)	117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	516
XmnI	GAANNNNTTC	1 cut(s)	560
XspI	CTAG	2 cut(s)	587, 1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.