AT1G13540

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002710
Physical Location & Seq
Reverse (-)
4635463 .. 4636805
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13540.1

Sequence Viewer

Length: 1146 bp
ATGTACATCACAAGGAGTTTCTCAGAGTACCGGAGGAATCCAGCAGAGCTAACACAGCCTCCTCCTGAGGGTCCAAATTCTGGAATTTTGGTAATCCAAGACCAACACTCACGGACACGGGCTACATCTTGCTTCGGCTCGTGGTTGGTTGTGGACTCTTCTCTAAGTGGTTTGCCATTGCCCCAAAATCTTAAGCTAGCAGTCACATTCAATATTGGAGGTGATGACAGCACTCGTGACCCAGTTGTGTTCATTCCTGTTCTTGATAAGCCTCTATCTTCAAACTGTTATTACGCTATTAAACGGCATGGGAAGCATTCAGGGGAAGCGTCTGGAAGTGCAAAAGAGGACGATATAGTCTCCTGCTGCTTTTGCTCTAGTTTTGTTCCTGAAGCCAAACCAAAACAGTTAGATCCTTTTGACATGTACCAACAATTCAAGATCCATCAAAAGGAGCCTTCCTCGCGTTGTTACTACGCAACATCTGTCGCTCCTGACGGGGTCCCACCATGGTTTCTGAGGAAAAAAGAGTGGACGGTTGAATACTCGAGGTTCCAAGACTTTGAACTGAGAGATGATGCAAAAGGACTCATCACAGAGCTTCGTACTGAGCTTCCTCTTCTTGGTATGAGCACTGTGGTTGGGAAGTGGTATGTCCCTTTCATATTCGTGAAAGAAAGAGAGGTAAAGGATCAGATCAAGAATTCGATGTATTACAGCATGACTCTTGAACAAAGATGGAAAGAGCTTTTTTCTGATGAGAACGACAAAAGCGAGAACCGTGATGTTGTCGTTGATGTAGAAGTAGAAACAGAAGTTGTTAAGCTTGAGGGACAAATGATTGAAAGAGGTCTGGAAGCAAATGGGTTTGTCTGGTTTGGGGTTGGAGACAAAAAGATCGGTTTAGGATCAGTTGTTGTTGAGAGGATGAAATGGGAAGAAGAGAGATTCGGGTGGACAGGCAAAGGCGACAATGAGCGATCAATGACAGTTAAGAGATTGGAGAAATCAACAGATGGTAGCCTTTGGAAGCATTATCATTGTTATGTTCTGATAGAGAGCTTTGTCTTGAAGAGAATGGATGAGAGTTTGGTCTTAACATATGAGTTTACACATGTAGATAAGCTCAAAACCAAATGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

381

Amino Acids

43.91

Weight (kDa)

5.69

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 124 6.5e-37 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 356
AccB7I CCANNNNNTGG 1 cut(s) 80
AccII CGCG 1 cut(s) 466
AclWI GGATC 4 cut(s) 407, 436, 699, 916
AcsI RAATTY 3 cut(s) 76, 84, 703
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 4 cut(s) 5, 29, 428, 607
AfiI CCNNNNNNNGG 4 cut(s) 68, 80, 451, 623
AflII CTTAAG 1 cut(s) 191
AflIII ACRYGT 2 cut(s) 423, 1114
AgsI TTSAA 8 cut(s) 211, 282, 439, 542, 566, 731, 845, 1072
AluBI AGCT 8 cut(s) 49, 196, 601, 613, 748, 826, 1062, 1126
AluI AGCT 8 cut(s) 49, 196, 601, 613, 748, 826, 1062, 1126
Alw21I GWGCWC 1 cut(s) 635
Alw26I GTCTC 2 cut(s) 364, 882
AlwI GGATC 4 cut(s) 407, 436, 699, 916
Ama87I CYCGRG 1 cut(s) 547
ApeKI GCWGC 1 cut(s) 366
ApoI RAATTY 3 cut(s) 76, 84, 703
AspS9I GGNCC 2 cut(s) 71, 502
AsuHPI GGTGA 1 cut(s) 233
AsuNHI GCTAGC 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 547
AvaII GGWCC 2 cut(s) 71, 502
AxyI CCTNAGG 1 cut(s) 66
BauI CACGAG 2 cut(s) 139, 234
Bbv12I GWGCWC 1 cut(s) 635
BbvI GCAGC 1 cut(s) 353
BccI CCATC 3 cut(s) 453, 732, 1010
BceAI ACGGC 1 cut(s) 320
BcoDI GTCTC 2 cut(s) 364, 882
BfaI CTAG 2 cut(s) 197, 378
BfrI CTTAAG 1 cut(s) 191
BisI GCNGC 1 cut(s) 367
BlsI GCNGC 1 cut(s) 368
Bme18I GGWCC 2 cut(s) 71, 502
BmeT110I CYCGRG 1 cut(s) 547
BmgT120I GGNCC 2 cut(s) 71, 502
BmiI GGNNCC 5 cut(s) 72, 456, 503, 504, 554
BmrI ACTGGG 1 cut(s) 236
BmsI GCATC 1 cut(s) 568
BmtI GCTAGC 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 236
BplI GAGNNNNNCTC 2 cut(s) 446, 478
BpuEI CTTGAG 1 cut(s) 848
BsaJI CCNNGG 1 cut(s) 509
BsaWI WCCGGW 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 80, 451, 623
Bse1I ACTGG 1 cut(s) 242
Bse21I CCTNAGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 509
BseGI GGATG 2 cut(s) 933, 1087
BseLI CCNNNNNNNGG 4 cut(s) 68, 80, 451, 623
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 5 cut(s) 36, 57, 509, 560, 600
BseNI ACTGG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 353
Bsh1236I CGCG 1 cut(s) 466
BsiHKAI GWGCWC 1 cut(s) 635
BsiHKCI CYCGRG 1 cut(s) 547
BsiSI CCGG 1 cut(s) 31
BslFI GGGAC 3 cut(s) 488, 641, 846
BslI CCNNNNNNNGG 4 cut(s) 68, 80, 451, 623
BsmAI GTCTC 2 cut(s) 364, 882
BsmFI GGGAC 3 cut(s) 488, 641, 846
BsmI GAATGC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 547
Bsp1286I GDGCHC 1 cut(s) 635
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 7 cut(s) 412, 441, 691, 696, 897, 908, 980
Bsp19I CCATGG 1 cut(s) 509
BspCNI CTCAG 5 cut(s) 35, 58, 510, 561, 601
BspFNI CGCG 1 cut(s) 466
BspLI GGNNCC 5 cut(s) 72, 456, 503, 504, 554
BspOI GCTAGC 1 cut(s) 200
BspPI GGATC 4 cut(s) 407, 436, 699, 916
BspTI CTTAAG 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 176
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 509
BssMI GATC 7 cut(s) 412, 441, 691, 696, 897, 908, 980
BssSI CACGAG 2 cut(s) 139, 234
BssT1I CCWWGG 1 cut(s) 509
Bst2BI CACGAG 2 cut(s) 139, 234
Bst4CI ACNGT 6 cut(s) 287, 408, 538, 637, 782, 991
Bst6I CTCTTC 4 cut(s) 163, 624, 936, 1067
BstAFI CTTAAG 1 cut(s) 191
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 6 cut(s) 22, 66, 164, 518, 569, 609
BstDSI CCRYGG 1 cut(s) 509
BstF5I GGATG 2 cut(s) 933, 1087
BstFNI CGCG 1 cut(s) 466
BstKTI GATC 7 cut(s) 415, 444, 694, 699, 900, 911, 983
BstMAI GTCTC 2 cut(s) 364, 882
BstMBI GATC 7 cut(s) 412, 441, 691, 696, 897, 908, 980
BstMWI GCNNNNNNNGC 4 cut(s) 55, 313, 372, 463
BstNSI RCATGY 2 cut(s) 427, 1118
BstUI CGCG 1 cut(s) 466
BstV1I GCAGC 1 cut(s) 353
BstX2I RGATCY 2 cut(s) 412, 441
BstYI RGATCY 2 cut(s) 412, 441
Bsu36I CCTNAGG 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 509
BtsCI GGATG 2 cut(s) 933, 1087
BtsIMutI CAGTG 1 cut(s) 633
Cac8I GCNNGC 1 cut(s) 198
Cfr13I GGNCC 2 cut(s) 71, 502
CseI GACGC 1 cut(s) 318
Csp6I GTAC 4 cut(s) 4, 28, 427, 606
CviAII CATG 5 cut(s) 308, 424, 510, 721, 1115
CviQI GTAC 4 cut(s) 4, 28, 427, 606
DdeI CTNAG 6 cut(s) 22, 66, 164, 518, 569, 609
DpnI GATC 7 cut(s) 414, 443, 693, 698, 899, 910, 982
DpnII GATC 7 cut(s) 412, 441, 691, 696, 897, 908, 980
DrdI GACNNNNNNGTC 1 cut(s) 356
DseDI GACNNNNNNGTC 1 cut(s) 356
Eam1104I CTCTTC 4 cut(s) 163, 624, 936, 1067
EarI CTCTTC 4 cut(s) 163, 624, 936, 1067
Eco130I CCWWGG 1 cut(s) 509
Eco47I GGWCC 2 cut(s) 71, 502
Eco57I CTGAAG 1 cut(s) 411
Eco81I CCTNAGG 1 cut(s) 66
Eco88I CYCGRG 1 cut(s) 547
EcoO109I RGGNCCY 1 cut(s) 502
EcoRI GAATTC 1 cut(s) 703
EcoT14I CCWWGG 1 cut(s) 509
ErhI CCWWGG 1 cut(s) 509
FaeI CATG 5 cut(s) 311, 427, 513, 724, 1118
FaqI GGGAC 3 cut(s) 488, 641, 846
FatI CATG 5 cut(s) 307, 423, 509, 720, 1114
FauNDI CATATG 1 cut(s) 1102
Fnu4HI GCNGC 1 cut(s) 367
FokI GGATG 2 cut(s) 940, 1094
Fsp4HI GCNGC 1 cut(s) 367
FspBI CTAG 2 cut(s) 197, 378
GluI GCNGC 1 cut(s) 367
HapII CCGG 1 cut(s) 31
HgaI GACGC 1 cut(s) 318
Hin1II CATG 5 cut(s) 311, 427, 513, 724, 1118
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 5 cut(s) 37, 155, 588, 724, 948
HpaII CCGG 1 cut(s) 31
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 4 cut(s) 154, 534, 957, 1110
Hpy188I TCNGA 5 cut(s) 25, 519, 696, 757, 1053
Hpy8I GTNNAC 4 cut(s) 154, 534, 957, 1110
HpyAV CCTTC 1 cut(s) 468
HpyCH4III ACNGT 6 cut(s) 287, 408, 538, 637, 782, 991
HpyCH4V TGCA 2 cut(s) 341, 581
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 313, 372, 463
HpyF3I CTNAG 6 cut(s) 22, 66, 164, 518, 569, 609
Hsp92II CATG 5 cut(s) 311, 427, 513, 724, 1118
KflI GGGWCCC 1 cut(s) 502
Kzo9I GATC 7 cut(s) 412, 441, 691, 696, 897, 908, 980
LmnI GCTCC 2 cut(s) 454, 496
Lsp1109I GCAGC 1 cut(s) 353
LweI GCATC 1 cut(s) 568
MaeI CTAG 2 cut(s) 197, 378
MaeIII GTNAC 3 cut(s) 202, 236, 470
MalI GATC 7 cut(s) 414, 443, 693, 698, 899, 910, 982
MboI GATC 7 cut(s) 412, 441, 691, 696, 897, 908, 980
MboII GAAGA 6 cut(s) 150, 270, 611, 950, 953, 1084
MflI RGATCY 2 cut(s) 412, 441
MhlI GDGCHC 1 cut(s) 635
MluCI AATT 4 cut(s) 76, 84, 434, 703
MlyI GAGTC 3 cut(s) 149, 582, 718
MmeI TCCRAC 1 cut(s) 865
MseI TTAA 6 cut(s) 192, 300, 822, 993, 1097, 1144
MslI CAYNNNNRTG 2 cut(s) 668, 1044
MspCI CTTAAG 1 cut(s) 191
MspI CCGG 1 cut(s) 31
Mva1269I GAATGC 1 cut(s) 316
MvnI CGCG 1 cut(s) 466
MwoI GCNNNNNNNGC 4 cut(s) 55, 313, 372, 463
NcoI CCATGG 1 cut(s) 509
NdeI CATATG 1 cut(s) 1102
NdeII GATC 7 cut(s) 412, 441, 691, 696, 897, 908, 980
NheI GCTAGC 1 cut(s) 196
NlaIII CATG 5 cut(s) 311, 427, 513, 724, 1118
NlaIV GGNNCC 5 cut(s) 72, 456, 503, 504, 554
NmuCI GTSAC 2 cut(s) 202, 236
NspI RCATGY 2 cut(s) 427, 1118
PaeR7I CTCGAG 1 cut(s) 547
PciI ACATGT 2 cut(s) 423, 1114
PcsI WCGNNNNNNNCGW 1 cut(s) 771
PctI GAATGC 1 cut(s) 316
PfeI GAWTC 2 cut(s) 37, 948
PflFI GACNNNGTC 1 cut(s) 500
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 1 cut(s) 368
PleI GAGTC 3 cut(s) 149, 582, 718
PpsI GAGTC 3 cut(s) 149, 582, 718
PpuMI RGGWCCY 1 cut(s) 502
PscI ACATGT 2 cut(s) 423, 1114
Psp5II RGGWCCY 1 cut(s) 502
PspN4I GGNNCC 5 cut(s) 72, 456, 503, 504, 554
PspPI GGNCC 2 cut(s) 71, 502
PspPPI RGGWCCY 1 cut(s) 502
PspXI VCTCGAGB 1 cut(s) 547
PsuI RGATCY 2 cut(s) 412, 441
PsyI GACNNNGTC 1 cut(s) 500
RsaI GTAC 4 cut(s) 5, 29, 428, 607
RsaNI GTAC 4 cut(s) 4, 28, 427, 606
RseI CAYNNNNRTG 2 cut(s) 668, 1044
SaqAI TTAA 6 cut(s) 192, 300, 822, 993, 1097, 1144
SatI GCNGC 1 cut(s) 367
Sau3AI GATC 7 cut(s) 412, 441, 691, 696, 897, 908, 980
Sau96I GGNCC 2 cut(s) 71, 502
SchI GAGTC 3 cut(s) 149, 582, 718
SduI GDGCHC 1 cut(s) 635
SfaNI GCATC 1 cut(s) 568
Sfr274I CTCGAG 1 cut(s) 547
SinI GGWCC 2 cut(s) 71, 502
SlaI CTCGAG 1 cut(s) 547
SmiMI CAYNNNNRTG 2 cut(s) 668, 1044
SmlI CTYRAG 3 cut(s) 191, 547, 827
SmoI CTYRAG 3 cut(s) 191, 547, 827
Sse9I AATT 4 cut(s) 76, 84, 434, 703
SspI AATATT 1 cut(s) 214
SspMI CTAG 2 cut(s) 197, 378
StyI CCWWGG 1 cut(s) 509
TaaI ACNGT 6 cut(s) 287, 408, 538, 637, 782, 991
TaqI TCGA 2 cut(s) 548, 707
TasI AATT 4 cut(s) 76, 84, 434, 703
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 2 cut(s) 37, 948
Tru1I TTAA 6 cut(s) 192, 300, 822, 993, 1097, 1144
Tru9I TTAA 6 cut(s) 192, 300, 822, 993, 1097, 1144
TscAI CASTG 1 cut(s) 640
TseFI GTSAC 2 cut(s) 202, 236
TseI GCWGC 1 cut(s) 366
Tsp45I GTSAC 2 cut(s) 202, 236
TspDTI ATGAA 3 cut(s) 241, 652, 944
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 1 cut(s) 640
Tth111I GACNNNGTC 1 cut(s) 500
Van91I CCANNNNNTGG 1 cut(s) 80
Vha464I CTTAAG 1 cut(s) 191
VpaK11BI GGWCC 2 cut(s) 71, 502
XapI RAATTY 3 cut(s) 76, 84, 703
XceI RCATGY 2 cut(s) 427, 1118
XhoI CTCGAG 1 cut(s) 547
XspI CTAG 2 cut(s) 197, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.