Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003130.1

Orthogroup ID

OG0002710

Physical Location & Seq

Genomic Coordinates Reverse (-)

76162 .. 77545

Gene Structure 1384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003130.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

atgtatgtgacaaggcctctttctatgtaccagaagcaaccttccatgctctctttgccacctccagagggtccaaattccggtattttggtcgtacaagatgaagaatcagagcctacaatttgctttggcttgtttaaaggccacgagctcaaggaccttcctttccctcagaacaagaatctgaagcttcgttattccacaagcaatggacagcaaacatccgtttcttatttctacactgccttcattccagtccttaaccagcctctggcatccaattgttattatgcaatttcgtcccgcgggaagcataaaggacaagcatacaccagttcaacagaggaggacttgggaacctgctgcttctgcacttacgtccgagatgtaccaccgcaacccttaaatcctaataacacatggcagcaatttcaggtccaacgcaaaggcagatttaaccaatgtggtggttttgttgccaaagctatagcttcggatgggtttcctccaaagtttcttggaagaaaaggctgggagatatatacctcaactccacgtgacttccatttagatgaagcaccaggtctagactctgcactacgtgcccgccttccggatttcaactttgaagtatcgaatgcaagctcgaatcctgtggttgtggggaagtggtattgtcccttcatgtttgttaaggaaggatcactaacaccgaaagatcaaatgagtagcacaaggtattatgagatgacactcgagcaaagatgggagcaaatatttgcatgtgacagtgatgcaaatgaggaaaataatgttgtggttgttgatgtttctgtcgaaaatgaatttgttactgttgctggaaattatgtggaagctgtgcatgaggagagggatatggctaatggggtaatctggtataggggttttaacaaagtaggaggagagagcattgtaggggtgagcttagcaattttagagagggtgaagtgggagcaacaaaggtttggatggaatggagggaatgagaggaaggtgagagtgaagaaagtagaggagtttgggggtatgggaaggtggaagaaatttggttgctatgtgttggttgagaggtttgtactgaaaagaatggatggaagcttggtactaacttatggtttcagacacactcatcagaataggagcaaatgggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

398

Amino Acids

45.35

Weight (kDa)

8.26

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13470 AT1G13480 AT1G13490 AT1G13490 AT1G13500 AT1G13510 AT1G13520 AT1G13530 AT1G13540 AT1G13550
fragaria_vesca	FvH4_4g28550 FvH4_4g28552 FvH4_4g28553
malus_domestica	MD13G1051700.v1.1 MD13G1051900.v1.1 MD13G1052000.v1.1 MD16G1057800.v1.1
prunus_persica	Prupe.1G300000_v2.0.a1 Prupe.1G300100_v2.0.a1
pyrus_communis	pycom13g04620 pycom16g05060
rosa_chinensis	RchiOBHm_Chr4g0436651 RchiOBHm_Chr4g0436661
rosa_multiflora	Rmu_sc0003130.1_g000017 Rmu_sc0003130.1_g000018
rosa_roxburghii	Rroxscaffold_5G00377730 Rroxscaffold_5G00377740
rosa_rugosa	Rorug04G0294900 Rorug04G0295000
rosa_samantha	Rh4AG349400 Rh4AG349500 Rh4BG358100 Rh4BG358200 Rh4CG372500 Rh4CG372600 Rh4DG352300 Rh4DG352400
rosa_wichuraiana	Rw4G030560 Rw4G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	368
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccII	CGCG	1 cut(s)	306
AccIII	TCCGGA	1 cut(s)	613
AciI	CCGC	4 cut(s)	304, 306, 395, 607
AclWI	GGATC	1 cut(s)	709
AcsI	RAATTY	3 cut(s)	76, 845, 1085
AcuI	CTGAAG	1 cut(s)	206
AcvI	CACGTG	1 cut(s)	557
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	5 cut(s)	29, 96, 390, 1119, 1146
AfiI	CCNNNNNNNGG	4 cut(s)	68, 80, 271, 613
AgsI	TTSAA	3 cut(s)	339, 622, 629
AjnI	CCWGG	1 cut(s)	580
AluBI	AGCT	8 cut(s)	151, 190, 485, 491, 645, 878, 966, 1140
AluI	AGCT	8 cut(s)	151, 190, 485, 491, 645, 878, 966, 1140
Alw21I	GWGCWC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	709
AlwNI	CAGNNNCTG	1 cut(s)	271
Ama87I	CYCGRG	1 cut(s)	755
Aor13HI	TCCGGA	1 cut(s)	613
AoxI	GGCC	2 cut(s)	14, 142
ApeKI	GCWGC	2 cut(s)	363, 424
ApoI	RAATTY	3 cut(s)	76, 845, 1085
AspS9I	GGNCC	3 cut(s)	71, 157, 436
AsuHPI	GGTGA	3 cut(s)	973, 997, 1048
AvaI	CYCGRG	1 cut(s)	755
AvaII	GGWCC	3 cut(s)	71, 157, 436
BaeGI	GKGCMC	1 cut(s)	607
BanII	GRGCYC	1 cut(s)	153
BarI	GAAGNNNNNNTAC	2 cut(s)	665, 697
BauI	CACGAG	1 cut(s)	146
BbrPI	CACGTG	1 cut(s)	557
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	350, 436
BccI	CCATC	4 cut(s)	491, 759, 1005, 1127
BciT130I	CCWGG	1 cut(s)	582
BfaI	CTAG	1 cut(s)	587
BfmI	CTRYAG	1 cut(s)	486
BfuAI	ACCTGC	1 cut(s)	368
BisI	GCNGC	2 cut(s)	364, 425
BlpI	GCTNAGC	1 cut(s)	967
BlsI	GCNGC	2 cut(s)	365, 426
Bme1390I	CCNGG	1 cut(s)	582
Bme18I	GGWCC	3 cut(s)	71, 157, 436
BmeT110I	CYCGRG	1 cut(s)	755
BmgT120I	GGNCC	3 cut(s)	71, 157, 436
BmiI	GGNNCC	2 cut(s)	72, 358
BmrFI	CCNGG	1 cut(s)	582
BmsI	GCATC	2 cut(s)	284, 784
BpmI	CTGGAG	1 cut(s)	48
Bpu1102I	GCTNAGC	1 cut(s)	967
BpuEI	CTTGAG	1 cut(s)	137
BsaAI	YACGTR	2 cut(s)	557, 602
BsaJI	CCNNGG	1 cut(s)	304
BsaWI	WCCGGW	2 cut(s)	80, 613
BsaXI	ACNNNNNCTCC	2 cut(s)	535, 565
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 80, 271, 613
Bse1I	ACTGG	2 cut(s)	254, 333
Bse3DI	GCAATG	1 cut(s)	214
BseAI	TCCGGA	1 cut(s)	613
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	5 cut(s)	221, 275, 502, 1016, 1138
BseLI	CCNNNNNNNGG	4 cut(s)	68, 80, 271, 613
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	254, 333
BseRI	GAGGAG	4 cut(s)	359, 902, 957, 1070
BseSI	GKGCMC	1 cut(s)	607
BseXI	GCAGC	2 cut(s)	350, 436
BseYI	CCCAGC	1 cut(s)	531
BsgI	GTGCAG	2 cut(s)	355, 579
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	16, 144
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	755
BsiSI	CCGG	2 cut(s)	81, 614
BslFI	GGGAC	2 cut(s)	286, 663
BslI	CCNNNNNNNGG	4 cut(s)	68, 80, 271, 613
BsmFI	GGGAC	2 cut(s)	286, 663
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	2 cut(s)	16, 144
BsoBI	CYCGRG	1 cut(s)	755
Bsp1286I	GDGCHC	2 cut(s)	153, 607
Bsp13I	TCCGGA	1 cut(s)	613
Bsp143I	GATC	2 cut(s)	701, 718
Bsp1720I	GCTNAGC	1 cut(s)	967
BspACI	CCGC	4 cut(s)	304, 306, 395, 607
BspANI	GGCC	2 cut(s)	16, 144
BspCNI	CTCAG	1 cut(s)	184
BspEI	TCCGGA	1 cut(s)	613
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	72, 358
BspMI	ACCTGC	1 cut(s)	368
BspPI	GGATC	1 cut(s)	709
BsrDI	GCAATG	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	254, 333
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	2 cut(s)	701, 718
BssSI	CACGAG	1 cut(s)	146
Bst2BI	CACGAG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	2 cut(s)	791, 856
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstBAI	YACGTR	2 cut(s)	557, 602
BstC8I	GCNNGC	2 cut(s)	607, 643
BstDEI	CTNAG	2 cut(s)	171, 967
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	5 cut(s)	221, 275, 502, 1016, 1138
BstFNI	CGCG	1 cut(s)	306
BstKTI	GATC	2 cut(s)	704, 721
BstMBI	GATC	2 cut(s)	701, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 369, 602
BstNI	CCWGG	1 cut(s)	582
BstNSI	RCATGY	1 cut(s)	786
BstSCI	CCNGG	1 cut(s)	580
BstSFI	CTRYAG	1 cut(s)	486
BstSLI	GKGCMC	1 cut(s)	607
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	350, 436
BstXI	CCANNNNNNTGG	1 cut(s)	467
BsuRI	GGCC	2 cut(s)	16, 144
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	5 cut(s)	221, 275, 502, 1016, 1138
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	240, 796
BveI	ACCTGC	1 cut(s)	368
Cac8I	GCNNGC	2 cut(s)	607, 643
CaiI	CAGNNNCTG	1 cut(s)	271
Cfr13I	GGNCC	3 cut(s)	71, 157, 436
Cfr42I	CCGCGG	1 cut(s)	307
CsiI	ACCWGGT	1 cut(s)	580
Csp6I	GTAC	5 cut(s)	28, 95, 389, 1118, 1145
CviAII	CATG	5 cut(s)	46, 420, 685, 783, 884
CviQI	GTAC	5 cut(s)	28, 95, 389, 1118, 1145
DdeI	CTNAG	2 cut(s)	171, 967
DpnI	GATC	2 cut(s)	703, 720
DpnII	GATC	2 cut(s)	701, 718
DraI	TTTAAA	1 cut(s)	139
DraIII	CACNNNGTG	1 cut(s)	602
Ecl136II	GAGCTC	1 cut(s)	151
Eco147I	AGGCCT	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	3 cut(s)	71, 157, 436
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	206
Eco72I	CACGTG	1 cut(s)	557
Eco88I	CYCGRG	1 cut(s)	755
EcoICRI	GAGCTC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	153
FaeI	CATG	5 cut(s)	49, 423, 688, 786, 887
FaqI	GGGAC	2 cut(s)	286, 663
FatI	CATG	5 cut(s)	45, 419, 684, 782, 883
FauI	CCCGC	3 cut(s)	299, 311, 614
Fnu4HI	GCNGC	2 cut(s)	364, 425
FokI	GGATG	5 cut(s)	208, 262, 509, 1023, 1145
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	364, 425
FspBI	CTAG	1 cut(s)	587
GluI	GCNGC	2 cut(s)	364, 425
GsaI	CCCAGC	1 cut(s)	535
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	16, 144
HapII	CCGG	2 cut(s)	81, 614
Hin1II	CATG	5 cut(s)	49, 423, 688, 786, 887
HindIII	AAGCTT	2 cut(s)	188, 1138
HinfI	GANTC	4 cut(s)	107, 181, 590, 649
HpaII	CCGG	2 cut(s)	81, 614
HphI	GGTGA	3 cut(s)	973, 997, 1048
Hpy188I	TCNGA	7 cut(s)	112, 174, 186, 383, 496, 1163, 1176
Hpy188III	TCNNGA	3 cut(s)	65, 587, 614
HpyAV	CCTTC	8 cut(s)	51, 170, 256, 620, 691, 692, 1027, 1068
HpyCH4III	ACNGT	2 cut(s)	791, 856
HpyCH4IV	ACGT	3 cut(s)	378, 556, 601
HpyCH4V	TGCA	7 cut(s)	293, 372, 596, 641, 782, 797, 883
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 369, 602
HpyF3I	CTNAG	2 cut(s)	171, 967
HpySE526I	ACGT	3 cut(s)	378, 556, 601
Hsp92II	CATG	5 cut(s)	49, 423, 688, 786, 887
Kpn2I	TCCGGA	1 cut(s)	613
KspI	CCGCGG	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	701, 718
LmnI	GCTCC	3 cut(s)	769, 994, 1182
Lsp1109I	GCAGC	2 cut(s)	350, 436
LweI	GCATC	2 cut(s)	284, 784
MabI	ACCWGGT	1 cut(s)	580
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	3 cut(s)	378, 556, 601
MaeIII	GTNAC	4 cut(s)	7, 557, 785, 850
MalI	GATC	2 cut(s)	703, 720
MboI	GATC	2 cut(s)	701, 718
MboII	GAAGA	4 cut(s)	116, 534, 1057, 1093
MfeI	CAATTG	1 cut(s)	280
MhlI	GDGCHC	2 cut(s)	153, 607
MluCI	AATT	9 cut(s)	76, 120, 280, 294, 428, 845, 865, 972, 1085
MlyI	GAGTC	1 cut(s)	584
MmeI	TCCRAC	1 cut(s)	463
MroI	TCCGGA	1 cut(s)	613
MseI	TTAA	6 cut(s)	138, 261, 404, 456, 693, 930
MslI	CAYNNNNRTG	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	306
MspI	CCGG	2 cut(s)	81, 614
MspR9I	CCNGG	1 cut(s)	582
MunI	CAATTG	1 cut(s)	280
Mva1269I	GAATGC	1 cut(s)	643
MvaI	CCWGG	1 cut(s)	582
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	3 cut(s)	55, 369, 602
NdeII	GATC	2 cut(s)	701, 718
NlaIII	CATG	5 cut(s)	49, 423, 688, 786, 887
NlaIV	GGNNCC	2 cut(s)	72, 358
NmuCI	GTSAC	3 cut(s)	7, 557, 785
NspI	RCATGY	1 cut(s)	786
PaeR7I	CTCGAG	1 cut(s)	755
PceI	AGGCCT	1 cut(s)	16
PctI	GAATGC	1 cut(s)	643
PfeI	GAWTC	3 cut(s)	107, 181, 649
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	2 cut(s)	365, 426
PleI	GAGTC	1 cut(s)	584
PmaCI	CACGTG	1 cut(s)	557
PmlI	CACGTG	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	584
Ppu21I	YACGTR	2 cut(s)	557, 602
PpuMI	RGGWCCY	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	580
PspCI	CACGTG	1 cut(s)	557
PspFI	CCCAGC	1 cut(s)	531
PspGI	CCWGG	1 cut(s)	580
PspN4I	GGNNCC	2 cut(s)	72, 358
PspPI	GGNCC	3 cut(s)	71, 157, 436
PspPPI	RGGWCCY	1 cut(s)	157
PspXI	VCTCGAGB	1 cut(s)	755
PstNI	CAGNNNCTG	1 cut(s)	271
RsaI	GTAC	5 cut(s)	29, 96, 390, 1119, 1146
RsaNI	GTAC	5 cut(s)	28, 95, 389, 1118, 1145
RseI	CAYNNNNRTG	1 cut(s)	570
SacI	GAGCTC	1 cut(s)	153
SacII	CCGCGG	1 cut(s)	307
SaqAI	TTAA	6 cut(s)	138, 261, 404, 456, 693, 930
SatI	GCNGC	2 cut(s)	364, 425
Sau3AI	GATC	2 cut(s)	701, 718
Sau96I	GGNCC	3 cut(s)	71, 157, 436
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	1 cut(s)	582
SduI	GDGCHC	2 cut(s)	153, 607
SexAI	ACCWGGT	1 cut(s)	580
SfaNI	GCATC	2 cut(s)	284, 784
SfcI	CTRYAG	1 cut(s)	486
Sfr274I	CTCGAG	1 cut(s)	755
Sfr303I	CCGCGG	1 cut(s)	307
SgrBI	CCGCGG	1 cut(s)	307
SinI	GGWCC	3 cut(s)	71, 157, 436
SlaI	CTCGAG	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	2 cut(s)	152, 755
SmoI	CTYRAG	2 cut(s)	152, 755
Sse9I	AATT	9 cut(s)	76, 120, 280, 294, 428, 845, 865, 972, 1085
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	4 cut(s)	304, 306, 395, 607
SspI	AATATT	1 cut(s)	777
SspMI	CTAG	1 cut(s)	587
SstI	GAGCTC	1 cut(s)	153
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	1 cut(s)	580
TaaI	ACNGT	2 cut(s)	791, 856
TaiI	ACGT	3 cut(s)	381, 559, 604
TaqI	TCGA	4 cut(s)	635, 647, 756, 837
TasI	AATT	9 cut(s)	76, 120, 280, 294, 428, 845, 865, 972, 1085
TatI	WGTACW	1 cut(s)	1117
TfiI	GAWTC	3 cut(s)	107, 181, 649
Tru1I	TTAA	6 cut(s)	138, 261, 404, 456, 693, 930
Tru9I	TTAA	6 cut(s)	138, 261, 404, 456, 693, 930
TscAI	CASTG	2 cut(s)	247, 796
TseFI	GTSAC	3 cut(s)	7, 557, 785
TseI	GCWGC	2 cut(s)	363, 424
Tsp45I	GTSAC	3 cut(s)	7, 557, 785
TspDTI	ATGAA	5 cut(s)	117, 238, 588, 673, 858
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	2 cut(s)	247, 796
Van91I	CCANNNNNTGG	1 cut(s)	271
VpaK11BI	GGWCC	3 cut(s)	71, 157, 436
XapI	RAATTY	3 cut(s)	76, 845, 1085
XbaI	TCTAGA	1 cut(s)	586
XceI	RCATGY	1 cut(s)	786
XhoI	CTCGAG	1 cut(s)	755
XspI	CTAG	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.