Rroxscaffold_5G00377740

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002710
Physical Location & Seq
Reverse (-)
58364877 .. 58366488
1612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00377740.1

Sequence Viewer

Length: 1179 bp
ATGTATGTGACAAGACGTCTCTCATTGTACAAAAAGTCTCCTGCTGATCTTTCATTGCCTCCTCCTGAAGGTCCAAATTCTGGTATTCTTGTTATCCAAGATGAAGAGCCCAAATGCTGTATGAATTTGTTCAAGAGTGATATGATTAAAGACCTGCCTCTCCCTCAGAACAGAAGTCTAGAGCTTTACTATGCCCAAGGGTTTTATACAATGAGAGACCTTCATTTTTTCAAAGTTCTATTCATCCCAGTTCTCAATCAGCCCCTGTCTTCCAATCAGTACTACGCAATATATCCATTTGGGAAGGATAGAGGGGAAGGGTACACAAGCTCAAAAGAGGATGAAACAGACATGGATCCATGTTGCTTCAGCAGCTGTTCTAATGATGTAAAGCCGCAACGTTTTGATCCCAAAAACCTGTACCAGCAATATCAGATTGATCTTCACAGAAAAATTGTGAACATTTCTGGTGGGTTTGTGGCTAATTCTATGGCTAAAGATGGTTGTCCCCCAGATGCATTGTGGAGAAGAGGGTGGAAACTCACTTGCTCAATGGCACATGAGTTCGAACTAGGTGACGCACCAGGCCTAGACACTACTCTCCGCGCTCAACTTCCTGGTTTTGATTTCCCATTGAATAATGTGGTTGTAGGGAAGTGGTATTGTCCATTCATGTTTGTCAAGGAAGGCACACCGAAACCGTCGAGAACAATATACTATGAGATGACACTTGAGCAAAGATGGGAACAAATATTTGTGAAGGAGCGTAGTAAGGAACATGATATAGGCAATGCTGTGAATGTGGATGTTGTTGTGCAAAGTGAGGTGGTTGTGGTTGTGCTTGGAGGGAGGGAAGGTGTTTGTGATGAGAAACATGTGGATGATGATGGGGTGGTGTGGTTTAAGAGTGTCAACAATGTGGATGAAGAGAGAAGGGTCGGGGTGAGCTTAGCGATTGTTGAGAGGATGAAGTGGGAGCAAGAAAGGGTTGGGTGGGTTGGGGGAGATGAAGGCAAAGTGAGAGTGGAGAGAGTTGAGGAATATGGAGGGATGGGTGAGTGGAAGAAGTTTGGTTGTTTTGTATTGGTTGAGAGGTTTGTGTTGAAAAGAATGAATGGGAGCTTGTTAGTTAGCCATGAGTTCAAGCACACTCATCAGATTAAGTGTAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

392

Amino Acids

45.12

Weight (kDa)

5.87

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 123 5.6e-30 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 19
Acc36I ACCTGC 1 cut(s) 162
AccB7I CCANNNNNTGG 1 cut(s) 80
AccII CGCG 1 cut(s) 606
AciI CCGC 2 cut(s) 395, 604
AclI AACGTT 1 cut(s) 400
AclWI GGATC 3 cut(s) 350, 363, 401
AcsI RAATTY 2 cut(s) 76, 124
AcuI CTGAAG 2 cut(s) 87, 352
AcyI GRCGYC 1 cut(s) 16
AfaI GTAC 4 cut(s) 29, 281, 323, 422
AfiI CCNNNNNNNGG 2 cut(s) 68, 80
AflIII ACRYGT 1 cut(s) 874
AgsI TTSAA 5 cut(s) 133, 232, 637, 1105, 1144
AhdI GACNNNNNGTC 1 cut(s) 15
AjnI CCWGG 2 cut(s) 583, 616
AluBI AGCT 5 cut(s) 184, 330, 375, 948, 1122
AluI AGCT 5 cut(s) 184, 330, 375, 948, 1122
Alw26I GTCTC 3 cut(s) 23, 42, 210
AlwI GGATC 3 cut(s) 350, 363, 401
AlwNI CAGNNNCTG 2 cut(s) 265, 375
AoxI GGCC 1 cut(s) 586
ApeKI GCWGC 1 cut(s) 372
ApoI RAATTY 2 cut(s) 76, 124
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 608
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 3 cut(s) 587, 955, 1067
AsuII TTCGAA 1 cut(s) 567
AvaII GGWCC 1 cut(s) 71
BamHI GGATCC 1 cut(s) 355
BanII GRGCYC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 384
BccI CCATC 4 cut(s) 494, 735, 881, 1045
BciT130I CCWGG 2 cut(s) 585, 618
BcoDI GTCTC 3 cut(s) 23, 42, 210
BfaI CTAG 3 cut(s) 179, 572, 590
BfuAI ACCTGC 1 cut(s) 162
BisI GCNGC 2 cut(s) 373, 395
BlpI GCTNAGC 1 cut(s) 949
BlsI GCNGC 2 cut(s) 374, 396
BmcAI AGTACT 1 cut(s) 281
Bme1390I CCNGG 2 cut(s) 585, 618
Bme18I GGWCC 1 cut(s) 71
BmeRI GACNNNNNGTC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 2 cut(s) 585, 618
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 505
BmuI ACTGGG 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 261
Bpu1102I GCTNAGC 1 cut(s) 949
Bpu14I TTCGAA 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 752
BsaHI GRCGYC 1 cut(s) 16
BsaI GGTCTC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 841, 871
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 80
Bse1I ACTGG 1 cut(s) 248
Bse3DI GCAATG 2 cut(s) 53, 796
BseBI CCWGG 2 cut(s) 585, 618
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 7 cut(s) 243, 346, 811, 886, 928, 972, 1056
BseLI CCNNNNNNNGG 2 cut(s) 68, 80
BseMI GCAATG 2 cut(s) 53, 796
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 384
Bsh1236I CGCG 1 cut(s) 606
BshFI GGCC 1 cut(s) 588
BslFI GGGAC 1 cut(s) 492
BslI CCNNNNNNNGG 2 cut(s) 68, 80
BsmAI GTCTC 3 cut(s) 23, 42, 210
BsmBI CGTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 492
BsnI GGCC 1 cut(s) 588
Bso31I GGTCTC 1 cut(s) 210
Bsp119I TTCGAA 1 cut(s) 567
Bsp1286I GDGCHC 1 cut(s) 111
Bsp1407I TGTACA 1 cut(s) 27
Bsp143I GATC 4 cut(s) 46, 355, 406, 439
Bsp1720I GCTNAGC 1 cut(s) 949
BspACI CCGC 2 cut(s) 395, 604
BspANI GGCC 1 cut(s) 588
BspCNI CTCAG 1 cut(s) 178
BspFNI CGCG 1 cut(s) 606
BspLI GGNNCC 1 cut(s) 357
BspMI ACCTGC 1 cut(s) 162
BspPI GGATC 3 cut(s) 350, 363, 401
BspQI GCTCTTC 1 cut(s) 99
BspT104I TTCGAA 1 cut(s) 567
BspTNI GGTCTC 1 cut(s) 210
BsrDI GCAATG 2 cut(s) 53, 796
BsrGI TGTACA 1 cut(s) 27
BsrI ACTGG 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 4 cut(s) 46, 355, 406, 439
BssNI GRCGYC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 196
Bst2UI CCWGG 2 cut(s) 585, 618
Bst4CI ACNGT 1 cut(s) 702
Bst6I CTCTTC 3 cut(s) 99, 523, 921
BstACI GRCGYC 1 cut(s) 16
BstAUI TGTACA 1 cut(s) 27
BstBI TTCGAA 1 cut(s) 567
BstDEI CTNAG 2 cut(s) 165, 949
BstENI CCTNNNNNAGG 1 cut(s) 66
BstF5I GGATG 7 cut(s) 243, 346, 811, 886, 928, 972, 1056
BstFNI CGCG 1 cut(s) 606
BstHHI GCGC 1 cut(s) 608
BstKTI GATC 4 cut(s) 49, 358, 409, 442
BstMAI GTCTC 3 cut(s) 23, 42, 210
BstMBI GATC 4 cut(s) 46, 355, 406, 439
BstMWI GCNNNNNNNGC 1 cut(s) 372
BstNI CCWGG 2 cut(s) 585, 618
BstNSI RCATGY 1 cut(s) 878
BstSCI CCNGG 2 cut(s) 583, 616
BstUI CGCG 1 cut(s) 606
BstV1I GCAGC 1 cut(s) 384
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BsuRI GGCC 1 cut(s) 588
BtsCI GGATG 7 cut(s) 243, 346, 811, 886, 928, 972, 1056
BveI ACCTGC 1 cut(s) 162
CaiI CAGNNNCTG 2 cut(s) 265, 375
CfoI GCGC 1 cut(s) 608
Cfr13I GGNCC 1 cut(s) 71
CseI GACGC 1 cut(s) 587
Csp6I GTAC 4 cut(s) 28, 280, 322, 421
CviAII CATG 7 cut(s) 352, 360, 560, 673, 779, 875, 1136
CviQI GTAC 4 cut(s) 28, 280, 322, 421
DdeI CTNAG 2 cut(s) 165, 949
DpnI GATC 4 cut(s) 48, 357, 408, 441
DpnII GATC 4 cut(s) 46, 355, 406, 439
DriI GACNNNNNGTC 1 cut(s) 15
Eam1104I CTCTTC 3 cut(s) 99, 523, 921
Eam1105I GACNNNNNGTC 1 cut(s) 15
EarI CTCTTC 3 cut(s) 99, 523, 921
Eco130I CCWWGG 1 cut(s) 196
Eco147I AGGCCT 1 cut(s) 588
Eco24I GRGCYC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 71
Eco57I CTGAAG 2 cut(s) 87, 352
EcoNI CCTNNNNNAGG 1 cut(s) 66
EcoRII CCWGG 2 cut(s) 583, 616
EcoT14I CCWWGG 1 cut(s) 196
EcoT22I ATGCAT 1 cut(s) 520
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 7 cut(s) 355, 363, 563, 676, 782, 878, 1139
FaqI GGGAC 1 cut(s) 492
FatI CATG 7 cut(s) 351, 359, 559, 672, 778, 874, 1135
Fnu4HI GCNGC 2 cut(s) 373, 395
FokI GGATG 7 cut(s) 230, 353, 818, 893, 935, 979, 1063
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 2 cut(s) 373, 395
FspBI CTAG 3 cut(s) 179, 572, 590
GlaI GCGC 1 cut(s) 607
GluI GCNGC 2 cut(s) 373, 395
HaeIII GGCC 1 cut(s) 588
HgaI GACGC 1 cut(s) 587
HhaI GCGC 1 cut(s) 608
Hin1I GRCGYC 1 cut(s) 16
Hin1II CATG 7 cut(s) 355, 363, 563, 676, 782, 878, 1139
Hin6I GCGC 1 cut(s) 606
HinP1I GCGC 1 cut(s) 606
HincII GTYRAC 1 cut(s) 913
HindII GTYRAC 1 cut(s) 913
HphI GGTGA 3 cut(s) 587, 955, 1067
Hpy166II GTNNAC 3 cut(s) 324, 460, 913
Hpy188I TCNGA 3 cut(s) 168, 435, 1158
Hpy188III TCNNGA 4 cut(s) 65, 133, 179, 705
Hpy8I GTNNAC 3 cut(s) 324, 460, 913
Hpy99I CGWCG 1 cut(s) 706
HpyAV CCTTC 9 cut(s) 62, 230, 298, 311, 680, 754, 848, 927, 1004
HpyCH4III ACNGT 1 cut(s) 702
HpyCH4IV ACGT 2 cut(s) 16, 400
HpyCH4V TGCA 2 cut(s) 518, 817
HpyF10VI GCNNNNNNNGC 1 cut(s) 372
HpyF3I CTNAG 2 cut(s) 165, 949
HpySE526I ACGT 2 cut(s) 16, 400
Hsp92I GRCGYC 1 cut(s) 16
Hsp92II CATG 7 cut(s) 355, 363, 563, 676, 782, 878, 1139
HspAI GCGC 1 cut(s) 606
Kzo9I GATC 4 cut(s) 46, 355, 406, 439
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 3 cut(s) 763, 976, 1119
Lsp1109I GCAGC 1 cut(s) 384
LweI GCATC 1 cut(s) 505
MaeI CTAG 3 cut(s) 179, 572, 590
MaeII ACGT 2 cut(s) 16, 400
MaeIII GTNAC 2 cut(s) 7, 575
MalI GATC 4 cut(s) 48, 357, 408, 441
MboI GATC 4 cut(s) 46, 355, 406, 439
MboII GAAGA 6 cut(s) 116, 261, 434, 540, 938, 1075
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 4 cut(s) 76, 124, 453, 484
Mph1103I ATGCAT 1 cut(s) 520
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 3 cut(s) 147, 903, 1161
MslI CAYNNNNRTG 1 cut(s) 879
MspA1I CMGCKG 1 cut(s) 375
MspR9I CCNGG 2 cut(s) 585, 618
MvaI CCWGG 2 cut(s) 585, 618
MvnI CGCG 1 cut(s) 606
MwoI GCNNNNNNNGC 1 cut(s) 372
NdeII GATC 4 cut(s) 46, 355, 406, 439
NlaIII CATG 7 cut(s) 355, 363, 563, 676, 782, 878, 1139
NlaIV GGNNCC 1 cut(s) 357
NmuCI GTSAC 2 cut(s) 7, 575
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 1 cut(s) 878
NspV TTCGAA 1 cut(s) 567
PceI AGGCCT 1 cut(s) 588
PciI ACATGT 1 cut(s) 874
PciSI GCTCTTC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 2 cut(s) 374, 396
PscI ACATGT 1 cut(s) 874
Psp1406I AACGTT 1 cut(s) 400
Psp6I CCWGG 2 cut(s) 583, 616
PspGI CCWGG 2 cut(s) 583, 616
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 1 cut(s) 71
PstNI CAGNNNCTG 2 cut(s) 265, 375
PsuI RGATCY 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 375
RsaI GTAC 4 cut(s) 29, 281, 323, 422
RsaNI GTAC 4 cut(s) 28, 280, 322, 421
RseI CAYNNNNRTG 1 cut(s) 879
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 3 cut(s) 147, 903, 1161
SatI GCNGC 2 cut(s) 373, 395
Sau3AI GATC 4 cut(s) 46, 355, 406, 439
Sau96I GGNCC 1 cut(s) 71
ScaI AGTACT 1 cut(s) 281
ScrFI CCNGG 2 cut(s) 585, 618
SduI GDGCHC 1 cut(s) 111
SfaNI GCATC 1 cut(s) 505
SfuI TTCGAA 1 cut(s) 567
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 879
SmlI CTYRAG 1 cut(s) 731
SmoI CTYRAG 1 cut(s) 731
Sse9I AATT 4 cut(s) 76, 124, 453, 484
SseBI AGGCCT 1 cut(s) 588
SsiI CCGC 2 cut(s) 395, 604
SspI AATATT 1 cut(s) 753
SspMI CTAG 3 cut(s) 179, 572, 590
StuI AGGCCT 1 cut(s) 588
StyD4I CCNGG 2 cut(s) 583, 616
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 1 cut(s) 702
TaiI ACGT 2 cut(s) 19, 403
TaqI TCGA 2 cut(s) 567, 704
TasI AATT 4 cut(s) 76, 124, 453, 484
TatI WGTACW 2 cut(s) 27, 279
TauI GCSGC 1 cut(s) 397
Tru1I TTAA 3 cut(s) 147, 903, 1161
Tru9I TTAA 3 cut(s) 147, 903, 1161
TseFI GTSAC 2 cut(s) 7, 575
TseI GCWGC 1 cut(s) 372
Tsp45I GTSAC 2 cut(s) 7, 575
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 71
XagI CCTNNNNNAGG 1 cut(s) 66
XapI RAATTY 2 cut(s) 76, 124
XbaI TCTAGA 1 cut(s) 178
XceI RCATGY 1 cut(s) 878
XcmI CCANNNNNNNNNTGG 1 cut(s) 519
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 3 cut(s) 179, 572, 590
ZraI GACGTC 1 cut(s) 17
ZrmI AGTACT 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.