FvH4_4g28552

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002710
Physical Location & Seq
Reverse (-)
29180673 .. 29182582
1910 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28552.t1

Sequence Viewer

Length: 1152 bp
ATGCTCTCTTTGTCACCTCCAGAGGGTCCGAATTCCGGTATTTTGGTTATACAAGATGAAGAATCAGAGCCTACAATTTGCTTTGGATTGTTTAAAGGTCATGAGCTCAAAGACCTCCCTTTCCCTCAGAACAAGAATCTGAAGCTGCGGTATTCCACAAGCACAGGAGAGAGCACACACGTTTCATATTTCTACACAGCCTTCATTCCAGTCGTTAACCAGCCTCTGGCATCCAATTGCTATTATGCAATTTCATCGCGCGGAAATCATATGGGACAAGCATACACCAGTTCGACAGAGGAGGATTTGGGAACCTGCTGCTTCTGCACCTATGTCCGAGATTTACCACCACAACCCTTAAATCCTAGTAACATACGACAGCAATTTCAGATCCAACGCAAGGGGAGATTTAACCAATGTGGTGGTTTTGTTGCCAAAGCCATAGCTTCGGATGAGTTTCCTCCAAAGTTTCTTGGAAGAAAAGGGTGGGAGATATATACCTCAACTCCACGTGACTTCCATTTAGATGAAGCACCAGGTCTAGACTCTGCACTACGTGCCCGCCTACCGGATTTCAACTTTGAAGTATCGAATACAAGCTCAAAGCCTGTAGTTGTGGGGAAGTGGTACTGTCCCTTCATGTTTGTTAAGGAAGGATCACTAACACTGAAAGATCAAATGAGCTGCACAAGGTATTATGAGATGACACTCGAGCAAAGATGGGAGCAAATATTTGCATGTGACAGTGATGCAAGTGAGGAAAATAATGCTGTGGTTGTCGATGTTTCTGTTGAAAATGAATTTGTTACCATTGCTGGAAATAATGTGGAAGCAGTGAATGAGGAGAAGGATGTGGCTAATGGGGTAATGTGGTATAGGGTTTTTAACAAAGTTGGAGGAGAGAGCACTGTAGGGGTGAGCTTAGCGGTTTTAGAGAGGGTGAAGTGGGAGCAACAAAGGTTTGGATGGAATGGAGGGAATGACAGGAAAGTGAGTGTGAAGAAAGTAGAGGAGTTTGGGGGTATGGGAAGGTGGAAGAAATTTGATTGCTATGTGTTGGGGGAGAGGTTTGTGTTGAAAAGAATGGATGGAAGATTGGTACTAAGTTATGGTTTCAGACACACTAATCACATTAGGAGCAAATGGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

384

Amino Acids

43.48

Weight (kDa)

6.36

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 8 - 108 6.6e-37 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 323
AccB7I CCANNNNNTGG 1 cut(s) 226
AccII CGCG 2 cut(s) 259, 261
AciI CCGC 4 cut(s) 148, 261, 562, 926
AclWI GGATC 2 cut(s) 385, 664
AcsI RAATTY 3 cut(s) 31, 800, 1040
AcuI CTGAAG 1 cut(s) 161
AcvI CACGTG 1 cut(s) 512
AdeI CACNNNGTG 1 cut(s) 557
AfaI GTAC 2 cut(s) 629, 1101
AfiI CCNNNNNNNGG 5 cut(s) 23, 35, 226, 400, 568
AflIII ACRYGT 1 cut(s) 178
AgsI TTSAA 4 cut(s) 577, 584, 794, 1078
AjnI CCWGG 1 cut(s) 535
AluBI AGCT 6 cut(s) 106, 145, 446, 600, 684, 921
AluI AGCT 6 cut(s) 106, 145, 446, 600, 684, 921
Alw21I GWGCWC 3 cut(s) 108, 176, 908
AlwI GGATC 2 cut(s) 385, 664
AlwNI CAGNNNCTG 1 cut(s) 226
Ama87I CYCGRG 1 cut(s) 710
ApeKI GCWGC 3 cut(s) 145, 318, 684
ApoI RAATTY 3 cut(s) 31, 800, 1040
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 3 cut(s) 6, 928, 952
AvaI CYCGRG 1 cut(s) 710
AvaII GGWCC 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 562
BanII GRGCYC 1 cut(s) 108
BarI GAAGNNNNNNTAC 2 cut(s) 620, 652
BbrPI CACGTG 1 cut(s) 512
Bbv12I GWGCWC 3 cut(s) 108, 176, 908
BbvI GCAGC 3 cut(s) 132, 305, 671
BccI CCATC 3 cut(s) 714, 960, 1082
BcgI CGANNNNNNTGC 2 cut(s) 237, 271
BciT130I CCWGG 1 cut(s) 537
BfaI CTAG 2 cut(s) 366, 542
BfmI CTRYAG 2 cut(s) 609, 909
BfuAI ACCTGC 1 cut(s) 323
BisI GCNGC 3 cut(s) 146, 319, 685
BlpI GCTNAGC 1 cut(s) 922
BlsI GCNGC 3 cut(s) 147, 320, 686
Bme1390I CCNGG 1 cut(s) 537
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 710
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 2 cut(s) 27, 313
BmrFI CCNGG 1 cut(s) 537
BmsI GCATC 2 cut(s) 239, 739
Bpu1102I GCTNAGC 1 cut(s) 922
BsaAI YACGTR 2 cut(s) 512, 557
BsaWI WCCGGW 2 cut(s) 35, 568
BsaXI ACNNNNNCTCC 2 cut(s) 490, 520
Bsc4I CCNNNNNNNGG 5 cut(s) 23, 35, 226, 400, 568
Bse1I ACTGG 2 cut(s) 209, 288
Bse3DI GCAATG 1 cut(s) 810
BseBI CCWGG 1 cut(s) 537
BseGI GGATG 5 cut(s) 230, 457, 856, 971, 1093
BseLI CCNNNNNNNGG 5 cut(s) 23, 35, 226, 400, 568
BseMI GCAATG 1 cut(s) 810
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 2 cut(s) 209, 288
BseRI GAGGAG 4 cut(s) 314, 857, 912, 1025
BseSI GKGCMC 1 cut(s) 562
BseXI GCAGC 3 cut(s) 132, 305, 671
BsgI GTGCAG 3 cut(s) 310, 534, 670
Bsh1236I CGCG 2 cut(s) 259, 261
BsiHKAI GWGCWC 3 cut(s) 108, 176, 908
BsiHKCI CYCGRG 1 cut(s) 710
BsiSI CCGG 2 cut(s) 36, 569
BslFI GGGAC 2 cut(s) 288, 618
BslI CCNNNNNNNGG 5 cut(s) 23, 35, 226, 400, 568
BsmFI GGGAC 2 cut(s) 288, 618
BsoBI CYCGRG 1 cut(s) 710
Bsp1286I GDGCHC 4 cut(s) 108, 176, 562, 908
Bsp143I GATC 3 cut(s) 390, 656, 673
Bsp1720I GCTNAGC 1 cut(s) 922
BspACI CCGC 4 cut(s) 148, 261, 562, 926
BspCNI CTCAG 1 cut(s) 139
BspFNI CGCG 2 cut(s) 259, 261
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 27, 313
BspMI ACCTGC 1 cut(s) 323
BspPI GGATC 2 cut(s) 385, 664
BsrDI GCAATG 1 cut(s) 810
BsrI ACTGG 2 cut(s) 209, 288
BssMI GATC 3 cut(s) 390, 656, 673
Bst2UI CCWGG 1 cut(s) 537
Bst4CI ACNGT 3 cut(s) 632, 746, 910
BstAPI GCANNNNNTGC 1 cut(s) 557
BstBAI YACGTR 2 cut(s) 512, 557
BstC8I GCNNGC 1 cut(s) 562
BstDEI CTNAG 3 cut(s) 126, 922, 1103
BstF5I GGATG 5 cut(s) 230, 457, 856, 971, 1093
BstFNI CGCG 2 cut(s) 259, 261
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 3 cut(s) 393, 659, 676
BstMBI GATC 3 cut(s) 390, 656, 673
BstMWI GCNNNNNNNGC 2 cut(s) 324, 557
BstNI CCWGG 1 cut(s) 537
BstNSI RCATGY 1 cut(s) 741
BstSCI CCNGG 1 cut(s) 535
BstSFI CTRYAG 2 cut(s) 609, 909
BstSLI GKGCMC 1 cut(s) 562
BstUI CGCG 2 cut(s) 259, 261
BstV1I GCAGC 3 cut(s) 132, 305, 671
BstX2I RGATCY 1 cut(s) 390
BstXI CCANNNNNNTGG 1 cut(s) 422
BstYI RGATCY 1 cut(s) 390
BtgZI GCGATG 1 cut(s) 240
BtsCI GGATG 5 cut(s) 230, 457, 856, 971, 1093
BtsI GCAGTG 1 cut(s) 840
BtsIMutI CAGTG 4 cut(s) 665, 751, 840, 906
BveI ACCTGC 1 cut(s) 323
Cac8I GCNNGC 1 cut(s) 562
CaiI CAGNNNCTG 1 cut(s) 226
CciI TCATGA 1 cut(s) 100
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 26
CsiI ACCWGGT 1 cut(s) 535
Csp6I GTAC 2 cut(s) 628, 1100
CviAII CATG 3 cut(s) 101, 640, 738
CviQI GTAC 2 cut(s) 628, 1100
DdeI CTNAG 3 cut(s) 126, 922, 1103
DpnI GATC 3 cut(s) 392, 658, 675
DpnII GATC 3 cut(s) 390, 656, 673
DraI TTTAAA 1 cut(s) 94
DraIII CACNNNGTG 1 cut(s) 557
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 161
Eco72I CACGTG 1 cut(s) 512
Eco88I CYCGRG 1 cut(s) 710
EcoICRI GAGCTC 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 535
EcoT38I GRGCYC 1 cut(s) 108
FaeI CATG 3 cut(s) 104, 643, 741
FaqI GGGAC 2 cut(s) 288, 618
FatI CATG 3 cut(s) 100, 639, 737
FauI CCCGC 1 cut(s) 569
FauNDI CATATG 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 146, 319, 685
FokI GGATG 5 cut(s) 217, 464, 863, 978, 1100
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 3 cut(s) 146, 319, 685
FspBI CTAG 2 cut(s) 366, 542
GlaI GCGC 1 cut(s) 260
GluI GCNGC 3 cut(s) 146, 319, 685
HapII CCGG 2 cut(s) 36, 569
HhaI GCGC 1 cut(s) 261
Hin1II CATG 3 cut(s) 104, 643, 741
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 3 cut(s) 62, 136, 545
HpaI GTTAAC 1 cut(s) 217
HpaII CCGG 2 cut(s) 36, 569
HphI GGTGA 3 cut(s) 6, 928, 952
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 8 cut(s) 30, 67, 129, 141, 338, 390, 451, 1118
Hpy188III TCNNGA 3 cut(s) 20, 101, 542
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 5 cut(s) 211, 646, 647, 841, 1023
HpyCH4III ACNGT 3 cut(s) 632, 746, 910
HpyCH4IV ACGT 3 cut(s) 180, 511, 556
HpyCH4V TGCA 6 cut(s) 248, 327, 551, 687, 737, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 324, 557
HpyF3I CTNAG 3 cut(s) 126, 922, 1103
HpySE526I ACGT 3 cut(s) 180, 511, 556
Hsp92II CATG 3 cut(s) 104, 643, 741
HspAI GCGC 1 cut(s) 259
KspAI GTTAAC 1 cut(s) 217
Kzo9I GATC 3 cut(s) 390, 656, 673
LmnI GCTCC 3 cut(s) 724, 949, 1137
Lsp1109I GCAGC 3 cut(s) 132, 305, 671
LweI GCATC 2 cut(s) 239, 739
MabI ACCWGGT 1 cut(s) 535
MaeI CTAG 2 cut(s) 366, 542
MaeII ACGT 3 cut(s) 180, 511, 556
MaeIII GTNAC 5 cut(s) 12, 368, 512, 740, 805
MalI GATC 3 cut(s) 392, 658, 675
MboI GATC 3 cut(s) 390, 656, 673
MboII GAAGA 5 cut(s) 71, 489, 1012, 1048, 1104
MfeI CAATTG 1 cut(s) 235
MflI RGATCY 1 cut(s) 390
MhlI GDGCHC 4 cut(s) 108, 176, 562, 908
MluCI AATT 7 cut(s) 31, 75, 235, 249, 383, 800, 1040
MlyI GAGTC 1 cut(s) 539
MmeI TCCRAC 2 cut(s) 418, 874
MseI TTAA 6 cut(s) 93, 216, 359, 411, 648, 885
MslI CAYNNNNRTG 1 cut(s) 525
MspI CCGG 2 cut(s) 36, 569
MspR9I CCNGG 1 cut(s) 537
MunI CAATTG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 537
MvnI CGCG 2 cut(s) 259, 261
MwoI GCNNNNNNNGC 2 cut(s) 324, 557
NdeI CATATG 1 cut(s) 270
NdeII GATC 3 cut(s) 390, 656, 673
NlaIII CATG 3 cut(s) 104, 643, 741
NlaIV GGNNCC 2 cut(s) 27, 313
NmuCI GTSAC 3 cut(s) 12, 512, 740
NspI RCATGY 1 cut(s) 741
PaeR7I CTCGAG 1 cut(s) 710
PagI TCATGA 1 cut(s) 100
PfeI GAWTC 2 cut(s) 62, 136
PflMI CCANNNNNTGG 1 cut(s) 226
PkrI GCNGC 3 cut(s) 147, 320, 686
PleI GAGTC 1 cut(s) 539
PmaCI CACGTG 1 cut(s) 512
PmlI CACGTG 1 cut(s) 512
PpsI GAGTC 1 cut(s) 539
Ppu21I YACGTR 2 cut(s) 512, 557
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 535
PspCI CACGTG 1 cut(s) 512
PspGI CCWGG 1 cut(s) 535
PspN4I GGNNCC 2 cut(s) 27, 313
PspPI GGNCC 1 cut(s) 26
PspXI VCTCGAGB 1 cut(s) 710
PstNI CAGNNNCTG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 390
RsaI GTAC 2 cut(s) 629, 1101
RsaNI GTAC 2 cut(s) 628, 1100
RseI CAYNNNNRTG 1 cut(s) 525
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 6 cut(s) 93, 216, 359, 411, 648, 885
SatI GCNGC 3 cut(s) 146, 319, 685
Sau3AI GATC 3 cut(s) 390, 656, 673
Sau96I GGNCC 1 cut(s) 26
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 1 cut(s) 537
SduI GDGCHC 4 cut(s) 108, 176, 562, 908
SexAI ACCWGGT 1 cut(s) 535
SfaNI GCATC 2 cut(s) 239, 739
SfcI CTRYAG 2 cut(s) 609, 909
Sfr274I CTCGAG 1 cut(s) 710
SinI GGWCC 1 cut(s) 26
SlaI CTCGAG 1 cut(s) 710
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
Sse9I AATT 7 cut(s) 31, 75, 235, 249, 383, 800, 1040
SsiI CCGC 4 cut(s) 148, 261, 562, 926
SspI AATATT 1 cut(s) 732
SspMI CTAG 2 cut(s) 366, 542
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 535
TaaI ACNGT 3 cut(s) 632, 746, 910
TaiI ACGT 3 cut(s) 183, 514, 559
TaqI TCGA 4 cut(s) 293, 590, 711, 780
TasI AATT 7 cut(s) 31, 75, 235, 249, 383, 800, 1040
TfiI GAWTC 2 cut(s) 62, 136
Tru1I TTAA 6 cut(s) 93, 216, 359, 411, 648, 885
Tru9I TTAA 6 cut(s) 93, 216, 359, 411, 648, 885
TscAI CASTG 4 cut(s) 672, 751, 840, 913
TseFI GTSAC 3 cut(s) 12, 512, 740
TseI GCWGC 3 cut(s) 145, 318, 684
Tsp45I GTSAC 3 cut(s) 12, 512, 740
TspDTI ATGAA 7 cut(s) 72, 174, 193, 243, 543, 628, 813
TspRI CASTG 4 cut(s) 672, 751, 840, 913
Van91I CCANNNNNTGG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 3 cut(s) 31, 800, 1040
XbaI TCTAGA 1 cut(s) 541
XceI RCATGY 1 cut(s) 741
XhoI CTCGAG 1 cut(s) 710
XspI CTAG 2 cut(s) 366, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.