AT1G13530

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002710
Physical Location & Seq
Reverse (-)
4633590 .. 4635129
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13530.1

Sequence Viewer

Length: 1158 bp
ATGTATGTAACAAAGCGTTTGTCCGAGTACCAGAGAAACCCATCGGAGCTTACTTTCCTTCCAACGGAAGGTCCAAACTCCGGCGTATTGGTGATTCAAGACGAAGAATCACAGCCTACATGCTGTTTTGGCAAATGCTTTGGTTGTGATCTCAATGGTTTGCCGTTTCCTCAGAACACAAGAGTCACCGTTAAATACCAAATCGGACATGGAGATGACAGAATTGTCTTGCTTGACTCGGTCGCGTTCATCCCCGTTCTTCACCAGCCTCCTTCTTCCAATCTTTACTACGTTATAAGGCGAAGAGGGAAACATGCAGGAGAAGCATGTGTTAGTGCAAAAGAAGAGGACAAAGTTTCTTGTTGCCTTTGTTTTACTTATGTCTCTAATGCTACGCCAAGGCTTCTTGATCCTTTTGACATATACCAACAATTTGAGATACATCAAAGAGGCTCATCAACTCGCAAGTTTTTCGCTACATCTGTTGCTTCAGATGGAATACCACCTCGGTTCCTGAGGAGAAAAGGCTGGACCGTTCCTTTCTCTGCTTCCCAAGACTATGGTTTGATTGATGATGCAAAGGGTGTAGTTGATGCAAAGCTGCGCTATGAGCTTCCCGATTTCGGTAAGAGTGTAGTAGTTGGAAAATGGTATGTTCCGTTTTTGTTTGTAAAGGAAGGAGATGCTAAAGATCAGATGAAGAAATCGATGTATTATAGTATGACACTTCACCAAAGATTTGAAGAGGTTTTCTTCTGCGAAAACGTTGACAATAAAAATTGCGAGGTTATAGTTGATGTGGAGGTAGAAACAGAAGTGGTTAAGCTTGAAGGAGAAAATATTGGAAGAGAGACAAAAGGTGTGAATTCAGATGGAGTTGTCTGGTTTGGTGTCTCAGAGACTCAGAAGATAGGTATTGGGTCTGTGGTCTTGGAGAGGATGAAATGGGAAGAAGAGAGGTTTGGGTGGTCGAAGAAAGGCAATGAACTAAAGTCTAGCATTAAGAGAACTGAGAAATTTGAAGGCGGTGGACCACAATGGAAGAGTTATAGATGCTATGTACTGGTAGAGACCTTTGAACTGAAGAAAACTGATGGGAGTTTGGTATTGACGTATGAGTTTAGACATGTTGATAAGTTGAAGAGTAAGTGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

385

Amino Acids

43.98

Weight (kDa)

6.63

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 123 4.7e-40 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
AasI GACNNNNNNGTC 1 cut(s) 224
AccII CGCG 1 cut(s) 245
AciI CCGC 1 cut(s) 1026
AclI AACGTT 1 cut(s) 765
AclWI GGATC 1 cut(s) 404
AcsI RAATTY 2 cut(s) 865, 1016
AcuI CTGAAG 2 cut(s) 474, 1103
AfaI GTAC 2 cut(s) 29, 1062
AfiI CCNNNNNNNGG 4 cut(s) 64, 68, 80, 623
AflIII ACRYGT 1 cut(s) 1126
AgsI TTSAA 6 cut(s) 98, 743, 830, 1022, 1079, 1141
AjuI GAANNNNNNNTTGG 2 cut(s) 945, 977
AluBI AGCT 4 cut(s) 49, 601, 613, 826
AluI AGCT 4 cut(s) 49, 601, 613, 826
Alw26I GTCTC 5 cut(s) 388, 845, 893, 898, 1064
AlwI GGATC 1 cut(s) 404
ApeKI GCWGC 1 cut(s) 601
ApoI RAATTY 2 cut(s) 865, 1016
ArsI GACNNNNNNTTYG 1 cut(s) 37
AspLEI GCGC 1 cut(s) 606
AspS9I GGNCC 3 cut(s) 71, 531, 1031
AsuHPI GGTGA 4 cut(s) 103, 178, 254, 722
AvaII GGWCC 3 cut(s) 71, 531, 1031
AxyI CCTNAGG 1 cut(s) 515
BbvI GCAGC 1 cut(s) 588
BccI CCATC 4 cut(s) 49, 488, 866, 1088
BceAI ACGGC 1 cut(s) 148
BcgI CGANNNNNNTGC 2 cut(s) 454, 488
BcoDI GTCTC 5 cut(s) 388, 845, 893, 898, 1064
BfaI CTAG 1 cut(s) 996
BisI GCNGC 1 cut(s) 602
BlsI GCNGC 1 cut(s) 603
Bme18I GGWCC 3 cut(s) 71, 531, 1031
BmgT120I GGNCC 3 cut(s) 71, 531, 1031
BmiI GGNNCC 1 cut(s) 512
BmsI GCATC 4 cut(s) 565, 583, 673, 1043
Bsa29I ATCGAT 1 cut(s) 707
BsaI GGTCTC 1 cut(s) 1064
BsaJI CCNNGG 2 cut(s) 398, 506
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 68, 80, 623
Bse1I ACTGG 1 cut(s) 1068
Bse21I CCTNAGG 1 cut(s) 515
Bse3DI GCAATG 1 cut(s) 988
BseCI ATCGAT 1 cut(s) 707
BseDI CCNNGG 2 cut(s) 398, 506
BseGI GGATG 2 cut(s) 249, 945
BseLI CCNNNNNNNGG 4 cut(s) 64, 68, 80, 623
BseMI GCAATG 1 cut(s) 988
BseMII CTCAG 5 cut(s) 185, 506, 909, 917, 1002
BseNI ACTGG 1 cut(s) 1068
BseRI GAGGAG 1 cut(s) 532
BseXI GCAGC 1 cut(s) 588
Bsh1236I CGCG 1 cut(s) 245
Bsh1285I CGRYCG 1 cut(s) 243
BshVI ATCGAT 1 cut(s) 707
BsiEI CGRYCG 1 cut(s) 243
BsiSI CCGG 1 cut(s) 81
BslI CCNNNNNNNGG 4 cut(s) 64, 68, 80, 623
BsmAI GTCTC 5 cut(s) 388, 845, 893, 898, 1064
Bso31I GGTCTC 1 cut(s) 1064
Bsp143I GATC 3 cut(s) 148, 409, 691
BspACI CCGC 1 cut(s) 1026
BspCNI CTCAG 5 cut(s) 184, 507, 908, 916, 1003
BspDI ATCGAT 1 cut(s) 707
BspFNI CGCG 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 512
BspPI GGATC 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 1064
BsrDI GCAATG 1 cut(s) 988
BsrI ACTGG 1 cut(s) 1068
BssECI CCNNGG 2 cut(s) 398, 506
BssMI GATC 3 cut(s) 148, 409, 691
BssT1I CCWWGG 1 cut(s) 398
Bst4CI ACNGT 2 cut(s) 190, 535
Bst6I CTCTTC 7 cut(s) 298, 339, 738, 841, 948, 1037, 1136
BstDEI CTNAG 5 cut(s) 171, 515, 895, 903, 1011
BstF5I GGATG 2 cut(s) 249, 945
BstFNI CGCG 1 cut(s) 245
BstHHI GCGC 1 cut(s) 606
BstKTI GATC 3 cut(s) 151, 412, 694
BstMAI GTCTC 5 cut(s) 388, 845, 893, 898, 1064
BstMBI GATC 3 cut(s) 148, 409, 691
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 3 cut(s) 129, 323, 610
BstNSI RCATGY 4 cut(s) 123, 317, 330, 1130
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 588
BstXI CCANNNNNNTGG 1 cut(s) 560
Bsu15I ATCGAT 1 cut(s) 707
Bsu36I CCTNAGG 1 cut(s) 515
BsuTUI ATCGAT 1 cut(s) 707
BtsCI GGATG 2 cut(s) 249, 945
CfoI GCGC 1 cut(s) 606
Cfr13I GGNCC 3 cut(s) 71, 531, 1031
ClaI ATCGAT 1 cut(s) 707
Csp6I GTAC 2 cut(s) 28, 1061
CviAII CATG 5 cut(s) 120, 209, 314, 327, 1127
CviJI RGCY 9 cut(s) 49, 115, 268, 403, 453, 528, 601, 613, 826
CviKI_1 RGCY 9 cut(s) 49, 115, 268, 403, 453, 528, 601, 613, 826
CviQI GTAC 2 cut(s) 28, 1061
DdeI CTNAG 5 cut(s) 171, 515, 895, 903, 1011
DpnI GATC 3 cut(s) 150, 411, 693
DpnII GATC 3 cut(s) 148, 409, 691
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
Eam1104I CTCTTC 7 cut(s) 298, 339, 738, 841, 948, 1037, 1136
EarI CTCTTC 7 cut(s) 298, 339, 738, 841, 948, 1037, 1136
Eco130I CCWWGG 1 cut(s) 398
Eco31I GGTCTC 1 cut(s) 1064
Eco47I GGWCC 3 cut(s) 71, 531, 1031
Eco57I CTGAAG 2 cut(s) 474, 1103
Eco81I CCTNAGG 1 cut(s) 515
EcoRI GAATTC 1 cut(s) 865
EcoT14I CCWWGG 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 398
FaeI CATG 5 cut(s) 123, 212, 317, 330, 1130
FatI CATG 5 cut(s) 119, 208, 313, 326, 1126
Fnu4HI GCNGC 1 cut(s) 602
FokI GGATG 2 cut(s) 236, 952
Fsp4HI GCNGC 1 cut(s) 602
FspBI CTAG 1 cut(s) 996
GlaI GCGC 1 cut(s) 605
GluI GCNGC 1 cut(s) 602
HapII CCGG 1 cut(s) 81
HhaI GCGC 1 cut(s) 606
Hin1II CATG 5 cut(s) 123, 212, 317, 330, 1130
Hin6I GCGC 1 cut(s) 604
HinP1I GCGC 1 cut(s) 604
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 5 cut(s) 94, 107, 183, 236, 901
HpaII CCGG 1 cut(s) 81
HphI GGTGA 4 cut(s) 103, 178, 254, 722
Hpy166II GTNNAC 2 cut(s) 769, 1031
Hpy188I TCNGA 9 cut(s) 25, 46, 174, 206, 493, 696, 871, 898, 906
Hpy188III TCNNGA 4 cut(s) 98, 407, 514, 617
Hpy8I GTNNAC 2 cut(s) 769, 1031
HpyAV CCTTC 6 cut(s) 62, 68, 282, 671, 824, 1016
HpyCH4III ACNGT 2 cut(s) 190, 535
HpyCH4IV ACGT 3 cut(s) 291, 765, 1112
HpyCH4V TGCA 4 cut(s) 317, 338, 578, 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 323, 610
HpyF3I CTNAG 5 cut(s) 171, 515, 895, 903, 1011
HpySE526I ACGT 3 cut(s) 291, 765, 1112
Hsp92II CATG 5 cut(s) 123, 212, 317, 330, 1130
HspAI GCGC 1 cut(s) 604
Kzo9I GATC 3 cut(s) 148, 409, 691
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 8 cut(s) 44, 94, 278, 303, 514, 527, 868, 1049
Lsp1109I GCAGC 1 cut(s) 588
LweI GCATC 4 cut(s) 565, 583, 673, 1043
MaeI CTAG 1 cut(s) 996
MaeII ACGT 3 cut(s) 291, 765, 1112
MaeIII GTNAC 2 cut(s) 7, 184
MalI GATC 3 cut(s) 150, 411, 693
MboI GATC 3 cut(s) 148, 409, 691
MluCI AATT 5 cut(s) 222, 431, 778, 865, 1016
MlyI GAGTC 3 cut(s) 192, 230, 895
MmeI TCCRAC 2 cut(s) 86, 622
MseI TTAA 3 cut(s) 192, 822, 1002
MslI CAYNNNNRTG 1 cut(s) 213
MspI CCGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 3 cut(s) 129, 323, 610
NdeII GATC 3 cut(s) 148, 409, 691
NlaIII CATG 5 cut(s) 123, 212, 317, 330, 1130
NlaIV GGNNCC 1 cut(s) 512
NmuCI GTSAC 1 cut(s) 184
NspI RCATGY 4 cut(s) 123, 317, 330, 1130
PciI ACATGT 1 cut(s) 1126
PfeI GAWTC 2 cut(s) 94, 107
PflFI GACNNNGTC 1 cut(s) 239
PkrI GCNGC 1 cut(s) 603
PleI GAGTC 3 cut(s) 191, 230, 895
PpsI GAGTC 3 cut(s) 191, 230, 895
PscI ACATGT 1 cut(s) 1126
PsiI TTATAA 1 cut(s) 296
Psp1406I AACGTT 1 cut(s) 765
PspN4I GGNNCC 1 cut(s) 512
PspPI GGNCC 3 cut(s) 71, 531, 1031
PsyI GACNNNGTC 1 cut(s) 239
RsaI GTAC 2 cut(s) 29, 1062
RsaNI GTAC 2 cut(s) 28, 1061
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 3 cut(s) 192, 822, 1002
SatI GCNGC 1 cut(s) 602
Sau3AI GATC 3 cut(s) 148, 409, 691
Sau96I GGNCC 3 cut(s) 71, 531, 1031
SchI GAGTC 3 cut(s) 192, 230, 895
SfaNI GCATC 4 cut(s) 565, 583, 673, 1043
SinI GGWCC 3 cut(s) 71, 531, 1031
SmiMI CAYNNNNRTG 1 cut(s) 213
Sse9I AATT 5 cut(s) 222, 431, 778, 865, 1016
SsiI CCGC 1 cut(s) 1026
SspI AATATT 1 cut(s) 841
SspMI CTAG 1 cut(s) 996
StyI CCWWGG 1 cut(s) 398
TaaI ACNGT 2 cut(s) 190, 535
TaiI ACGT 3 cut(s) 294, 768, 1115
TaqI TCGA 2 cut(s) 707, 971
TaqII GACCGA 1 cut(s) 229
TasI AATT 5 cut(s) 222, 431, 778, 865, 1016
TatI WGTACW 1 cut(s) 1060
TfiI GAWTC 2 cut(s) 94, 107
Tru1I TTAA 3 cut(s) 192, 822, 1002
Tru9I TTAA 3 cut(s) 192, 822, 1002
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 1 cut(s) 601
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 4 cut(s) 238, 713, 956, 999
TspGWI ACGGA 2 cut(s) 80, 648
Tth111I GACNNNGTC 1 cut(s) 239
VpaK11BI GGWCC 3 cut(s) 71, 531, 1031
XapI RAATTY 2 cut(s) 865, 1016
XceI RCATGY 4 cut(s) 123, 317, 330, 1130
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XspI CTAG 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.