FvH4_4g28553

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002710
Physical Location & Seq
Reverse (-)
29182858 .. 29185164
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28553.t1

Sequence Viewer

Length: 1176 bp
ATGTATGTGACAAGGCCTCTCTCATGGTACAAAAAGTATCCTGCTGATCTTTCATTGCCTCCTCCTGAAGGTCCAAACTCTGGTATTCTTGTTATCCAAGATGAAGAACCCAGATGCTGTATGAATTTGTTCAAGAGTGATATGATTCAAGACCTGCCTCTCCCTCAGAACAAAAGTCTAGAGCTTTACTATGCACAAGGATTTTATCCAGGAAGAGAACTTCATTTTTTCAAAGTTCTATTCATTCCAGTTCTCGATCAGCCACTGTCTTCCAATCAGTACTATGCAATATATCCATTTGGGAAGGATAGAGGGGAAGGGTACACAAGCTCAAAAGAAGATGAAACAGACATGGACACATGTTGCTTCAGCAGCTGTCCTAATGATGTAAAGCCGCAACGTTTTGATCACAAAAACCTGTACCAGCAATATCAGATTGATCTTCACAGAAAAATTGTGAACATTTCTGGTGGCTTTGTGGCTACTTGTATGGCTAAAGATGGTTGTCCCCCAGATGCATTGTGGAGAAGAGGGTGGAAACTCACTTGCTCAACGGCTAACGAGTTCAAACTAGGTGATGCACCAGGGCTAGACACGACTCTCCGAGCCCAGCTTCCTGGTTTTGATTTCCCATTGAATAATCTGGTTGTAGGGAAGTGGTATTGTCCATTCATGTTTGTCAAGGATGTCACACCTTTCAAGACAATGTATTATCAGATGACACTTGAGCAGAGATGGGAACAGATATTTGTGAAGGAGAGTATTGAGGAACATGATACAGGCAATGCTGTAAATGTGGATGCTGTTGTGCAAAGTAAGGTGGTTGTGGTTGTGGTAGGAGGGAGGGAAGGTGTGTGTGATGAGAGACATGTGGAAGATGATGGGGTAGTGTGGTTTAAGAGTGTCAACAATGTGGGTGAAGAAACAAGAGTTGGGTTGAGCTTTGCAATTGTTGAGAGGATGAAGTGGGAGCAAGAAAGAGTTGGGTGGGTTGGGGGAGATGATGAAGGCAAAGTGAGAGTGAAGAGAGTTGAGGAATATGGAGGGATTGGTCAGTGGAAGAAGTTTGGTTGTTTTGTATTGGTTGAGAAGTTTGTGTTGAAAAGAATGAATGGGAGCTTGTTAATTAGCCATGAGTTCAAGCATACTCATCAGATTAAGTGTAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

392

Amino Acids

44.98

Weight (kDa)

5.86

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 123 2.3e-30 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 162
AccB7I CCANNNNNTGG 1 cut(s) 80
AciI CCGC 1 cut(s) 395
AclI AACGTT 1 cut(s) 400
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 2 cut(s) 87, 352
AfaI GTAC 4 cut(s) 29, 281, 323, 422
AfiI CCNNNNNNNGG 2 cut(s) 68, 80
AflIII ACRYGT 2 cut(s) 359, 868
AgsI TTSAA 8 cut(s) 133, 149, 232, 568, 637, 700, 1102, 1141
AjnI CCWGG 3 cut(s) 208, 583, 616
AjuI GAANNNNNNNTTGG 2 cut(s) 915, 947
AluBI AGCT 6 cut(s) 184, 330, 375, 613, 942, 1119
AluI AGCT 6 cut(s) 184, 330, 375, 613, 942, 1119
Alw26I GTCTC 1 cut(s) 859
AlwNI CAGNNNCTG 3 cut(s) 117, 265, 375
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 372
ApoI RAATTY 1 cut(s) 124
Asp700I GAANNNNTTC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 587, 929
AvaII GGWCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 610
BbsI GAAGAC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 384
BccI CCATC 3 cut(s) 494, 729, 875
BceAI ACGGC 1 cut(s) 570
BciT130I CCWGG 3 cut(s) 210, 585, 618
BciVI GTATCC 1 cut(s) 48
BclI TGATCA 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 859
BfaI CTAG 3 cut(s) 179, 572, 590
BfuAI ACCTGC 1 cut(s) 162
BfuI GTATCC 1 cut(s) 48
BisI GCNGC 2 cut(s) 373, 395
BlsI GCNGC 2 cut(s) 374, 396
BmcAI AGTACT 1 cut(s) 281
Bme1390I CCNGG 3 cut(s) 210, 585, 618
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmrFI CCNGG 3 cut(s) 210, 585, 618
BmsI GCATC 4 cut(s) 104, 505, 568, 790
BpiI GAAGAC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 746
BsaJI CCNNGG 1 cut(s) 584
BsaXI ACNNNNNCTCC 2 cut(s) 835, 865
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 80
Bse1I ACTGG 1 cut(s) 248
Bse3DI GCAATG 2 cut(s) 53, 790
BseBI CCWGG 3 cut(s) 210, 585, 618
BseDI CCNNGG 1 cut(s) 584
BseGI GGATG 3 cut(s) 691, 805, 966
BseLI CCNNNNNNNGG 2 cut(s) 68, 80
BseMI GCAATG 2 cut(s) 53, 790
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 384
BseYI CCCAGC 1 cut(s) 609
BshFI GGCC 1 cut(s) 16
BslFI GGGAC 1 cut(s) 492
BslI CCNNNNNNNGG 2 cut(s) 68, 80
BsmAI GTCTC 1 cut(s) 859
BsmFI GGGAC 1 cut(s) 492
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 610
Bsp143I GATC 4 cut(s) 46, 256, 406, 439
BspACI CCGC 1 cut(s) 395
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 178
BspMI ACCTGC 1 cut(s) 162
BsrDI GCAATG 2 cut(s) 53, 790
BsrI ACTGG 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 584
BssMI GATC 4 cut(s) 46, 256, 406, 439
Bst2UI CCWGG 3 cut(s) 210, 585, 618
Bst4CI ACNGT 1 cut(s) 267
Bst6I CTCTTC 3 cut(s) 208, 523, 1019
BstDEI CTNAG 1 cut(s) 165
BstENI CCTNNNNNAGG 1 cut(s) 66
BstF5I GGATG 3 cut(s) 691, 805, 966
BstKTI GATC 4 cut(s) 49, 259, 409, 442
BstMAI GTCTC 1 cut(s) 859
BstMBI GATC 4 cut(s) 46, 256, 406, 439
BstMWI GCNNNNNNNGC 1 cut(s) 372
BstNI CCWGG 3 cut(s) 210, 585, 618
BstNSI RCATGY 2 cut(s) 363, 872
BstSCI CCNGG 3 cut(s) 208, 583, 616
BstV1I GCAGC 1 cut(s) 384
BstV2I GAAGAC 1 cut(s) 261
BstXI CCANNNNNNTGG 1 cut(s) 617
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 3 cut(s) 691, 805, 966
BtsIMutI CAGTG 2 cut(s) 263, 1061
BveI ACCTGC 1 cut(s) 162
CaiI CAGNNNCTG 3 cut(s) 117, 265, 375
Cfr13I GGNCC 1 cut(s) 71
Csp6I GTAC 4 cut(s) 28, 280, 322, 421
CviAII CATG 7 cut(s) 24, 352, 360, 673, 773, 869, 1133
CviQI GTAC 4 cut(s) 28, 280, 322, 421
DdeI CTNAG 1 cut(s) 165
DpnI GATC 4 cut(s) 48, 258, 408, 441
DpnII GATC 4 cut(s) 46, 256, 406, 439
Eam1104I CTCTTC 3 cut(s) 208, 523, 1019
EarI CTCTTC 3 cut(s) 208, 523, 1019
Eco147I AGGCCT 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 610
Eco47I GGWCC 1 cut(s) 71
Eco57I CTGAAG 2 cut(s) 87, 352
EcoNI CCTNNNNNAGG 1 cut(s) 66
EcoRII CCWGG 3 cut(s) 208, 583, 616
EcoT22I ATGCAT 1 cut(s) 520
EcoT38I GRGCYC 1 cut(s) 610
FaeI CATG 7 cut(s) 27, 355, 363, 676, 776, 872, 1136
FaqI GGGAC 1 cut(s) 492
FatI CATG 7 cut(s) 23, 351, 359, 672, 772, 868, 1132
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 2 cut(s) 373, 395
FokI GGATG 3 cut(s) 698, 812, 973
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 2 cut(s) 373, 395
FspBI CTAG 3 cut(s) 179, 572, 590
GluI GCNGC 2 cut(s) 373, 395
GsaI CCCAGC 1 cut(s) 613
HaeIII GGCC 1 cut(s) 16
Hin1II CATG 7 cut(s) 27, 355, 363, 676, 776, 872, 1136
HincII GTYRAC 1 cut(s) 907
HindII GTYRAC 1 cut(s) 907
HinfI GANTC 2 cut(s) 145, 598
HphI GGTGA 2 cut(s) 587, 929
Hpy166II GTNNAC 3 cut(s) 324, 460, 907
Hpy188I TCNGA 5 cut(s) 168, 435, 605, 717, 1155
Hpy188III TCNNGA 6 cut(s) 65, 133, 149, 179, 254, 700
Hpy8I GTNNAC 3 cut(s) 324, 460, 907
HpyAV CCTTC 6 cut(s) 62, 298, 311, 748, 842, 1001
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4IV ACGT 1 cut(s) 400
HpyCH4V TGCA 6 cut(s) 194, 287, 518, 581, 811, 947
HpyF10VI GCNNNNNNNGC 1 cut(s) 372
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 400
Hsp92II CATG 7 cut(s) 27, 355, 363, 676, 776, 872, 1136
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 4 cut(s) 46, 256, 406, 439
LmnI GCTCC 2 cut(s) 970, 1116
Lsp1109I GCAGC 1 cut(s) 384
LweI GCATC 4 cut(s) 104, 505, 568, 790
MaeI CTAG 3 cut(s) 179, 572, 590
MaeII ACGT 1 cut(s) 400
MaeIII GTNAC 2 cut(s) 7, 688
MalI GATC 4 cut(s) 48, 258, 408, 441
MboI GATC 4 cut(s) 46, 256, 406, 439
MfeI CAATTG 1 cut(s) 948
MhlI GDGCHC 1 cut(s) 610
MluCI AATT 4 cut(s) 124, 453, 948, 1125
MlyI GAGTC 1 cut(s) 592
Mph1103I ATGCAT 1 cut(s) 520
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 3 cut(s) 897, 1124, 1158
MspA1I CMGCKG 1 cut(s) 375
MspR9I CCNGG 3 cut(s) 210, 585, 618
MunI CAATTG 1 cut(s) 948
MvaI CCWGG 3 cut(s) 210, 585, 618
MwoI GCNNNNNNNGC 1 cut(s) 372
NdeII GATC 4 cut(s) 46, 256, 406, 439
NlaIII CATG 7 cut(s) 27, 355, 363, 676, 776, 872, 1136
NmuCI GTSAC 2 cut(s) 7, 688
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 2 cut(s) 363, 872
PceI AGGCCT 1 cut(s) 16
PciI ACATGT 2 cut(s) 359, 868
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 145
PflMI CCANNNNNTGG 1 cut(s) 80
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 2 cut(s) 374, 396
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
PscI ACATGT 2 cut(s) 359, 868
Psp1406I AACGTT 1 cut(s) 400
Psp6I CCWGG 3 cut(s) 208, 583, 616
PspFI CCCAGC 1 cut(s) 609
PspGI CCWGG 3 cut(s) 208, 583, 616
PspPI GGNCC 1 cut(s) 71
PstNI CAGNNNCTG 3 cut(s) 117, 265, 375
PvuII CAGCTG 1 cut(s) 375
RsaI GTAC 4 cut(s) 29, 281, 323, 422
RsaNI GTAC 4 cut(s) 28, 280, 322, 421
SaqAI TTAA 3 cut(s) 897, 1124, 1158
SatI GCNGC 2 cut(s) 373, 395
Sau3AI GATC 4 cut(s) 46, 256, 406, 439
Sau96I GGNCC 1 cut(s) 71
ScaI AGTACT 1 cut(s) 281
SchI GAGTC 1 cut(s) 592
ScrFI CCNGG 3 cut(s) 210, 585, 618
SduI GDGCHC 1 cut(s) 610
SfaNI GCATC 4 cut(s) 104, 505, 568, 790
SinI GGWCC 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
Sse9I AATT 4 cut(s) 124, 453, 948, 1125
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 1 cut(s) 395
SspMI CTAG 3 cut(s) 179, 572, 590
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 3 cut(s) 208, 583, 616
TaaI ACNGT 1 cut(s) 267
TaiI ACGT 1 cut(s) 403
TaqI TCGA 1 cut(s) 255
TasI AATT 4 cut(s) 124, 453, 948, 1125
TatI WGTACW 1 cut(s) 279
TauI GCSGC 1 cut(s) 397
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 3 cut(s) 897, 1124, 1158
Tru9I TTAA 3 cut(s) 897, 1124, 1158
TscAI CASTG 2 cut(s) 270, 1061
TseFI GTSAC 2 cut(s) 7, 688
TseI GCWGC 1 cut(s) 372
Tsp45I GTSAC 2 cut(s) 7, 688
TspRI CASTG 2 cut(s) 270, 1061
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 71
XagI CCTNNNNNAGG 1 cut(s) 66
XapI RAATTY 1 cut(s) 124
XbaI TCTAGA 1 cut(s) 178
XceI RCATGY 2 cut(s) 363, 872
XcmI CCANNNNNNNNNTGG 1 cut(s) 519
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 3 cut(s) 179, 572, 590
ZrmI AGTACT 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.