Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002710

Physical Location & Seq

Genomic Coordinates Reverse (-)

4627789 .. 4629169

Gene Structure 1381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTATGTGACAAAGCGTTTGTCTGAATACAAGAGAAACCCATCGGAGCTAACATTGCTTCCGACAGAAGGTCCGAACTCCGGAGTATTGGTCATTCAAGACGAAGAATCACGGCCTACATTGAAATGCTGCTTTGTCAATTCCTTTGATTGGGAACTCAATGGTTTGCCGTTTCCTCAGAACACAAGAGTCATCGTCAAACGCCAAATCGGAACTGCTCTCTATCTTGACCCGGTCGCGTTCATCCCCGTTCTTCATCAGCCACCTTCCTCCAATCTTTACTATGTTATAAGGGGAAGCGGGAAACACACAGGTGAAGCATGTGTTAGTGCAAAAGAAGGGGACAGAGCTTCTTGTTGCTTTTGCTTTACTTATATCCCTGAGGCTGTTCCAAGGCCTCTGGATCCTTTTGACATAAACCAACAATTTGAGATCCATCAAGGAAGATCATCAACCAAGAAGTTCTTTGCTACATCTGTTGCTTCAGATGGGATACCACCTCAGTTCCTGACGAGAAAAGGTTGGTCGGTTATTTTCTCGGCCCCCGAAGTCGAAGACTATGGTTTGATTGATGATGCAAAAGGCATAGTTGACGCAAAGCTGCGCTATGAGCTTCCTGATTTAGATAACAGCGTTGTAGTTGGGAAATGGTATGTTCCGTTCTTGTTTGTTAAGGAAGGTGATGCAAAAGATCAGATGTATAAGTCAATGTATTATAGTATGACGCTTCAGCAAAGATTTGAAGAGGTTTTCTTCTGTGAAAACGTTGGCAACAATAAACGTTTTGAGGTTGTAGTTGATGTGGAGGTAGAAACAGAAGTGGTCAAGCTTGAAGGAGAGAGGATTGCAAGAGAGACACAAGGTGTGAACTCAGATGGAGTTGTGTGGTTTAATGCCTCAGGGAATGAGAAGATAGGTCTTGGGTCTGTTGTCTTAGAGAGGATGAAATGGGAAGAGGAGAGGTTTGGGTGGTTAAACAAAGGCTATGAACAAAGGTCTAGCATTAAGAGAACTGAAAGATTTGAAGGCGGTGGACCATATTGGAAGAGTTATAGATGCTATGTATTGGTAGAGACCTTTGAATTGAAGAGAACTGATGGGAGTTTGGTATTGACATATGAGTTTAAACATGTTGATAAGTTGAAGAGCAAGTGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

386

Amino Acids

44.24

Weight (kDa)

5.57

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1262	PF06880	23 - 121	1.3e-36	Protein of unknown function (DUF1262)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13470 AT1G13480 AT1G13490 AT1G13490 AT1G13500 AT1G13510 AT1G13520 AT1G13530 AT1G13540 AT1G13550
fragaria_vesca	FvH4_4g28550 FvH4_4g28552 FvH4_4g28553
malus_domestica	MD13G1051700.v1.1 MD13G1051900.v1.1 MD13G1052000.v1.1 MD16G1057800.v1.1
prunus_persica	Prupe.1G300000_v2.0.a1 Prupe.1G300100_v2.0.a1
pyrus_communis	pycom13g04620 pycom16g05060
rosa_chinensis	RchiOBHm_Chr4g0436651 RchiOBHm_Chr4g0436661
rosa_multiflora	Rmu_sc0003130.1_g000017 Rmu_sc0003130.1_g000018
rosa_roxburghii	Rroxscaffold_5G00377730 Rroxscaffold_5G00377740
rosa_rugosa	Rorug04G0294900 Rorug04G0295000
rosa_samantha	Rh4AG349400 Rh4AG349500 Rh4BG358100 Rh4BG358200 Rh4CG372500 Rh4CG372600 Rh4DG352300 Rh4DG352400
rosa_wichuraiana	Rw4G030560 Rw4G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	290
AccII	CGCG	1 cut(s)	239
AccIII	TCCGGA	1 cut(s)	80
AciI	CCGC	2 cut(s)	300, 1029
AclI	AACGTT	2 cut(s)	765, 781
AclWI	GGATC	3 cut(s)	398, 411, 427
AcuI	CTGAAG	2 cut(s)	468, 713
AdeI	CACNNNGTG	1 cut(s)	863
AfiI	CCNNNNNNNGG	3 cut(s)	68, 80, 150
AflIII	ACRYGT	1 cut(s)	1129
AgsI	TTSAA	8 cut(s)	98, 124, 743, 833, 1025, 1082, 1087, 1144
AhdI	GACNNNNNGTC	1 cut(s)	69
AleI	CACNNNNGTG	1 cut(s)	312
AluBI	AGCT	5 cut(s)	49, 350, 601, 613, 829
AluI	AGCT	5 cut(s)	49, 350, 601, 613, 829
Alw26I	GTCTC	2 cut(s)	848, 1067
AlwI	GGATC	3 cut(s)	398, 411, 427
AlwNI	CAGNNNCTG	1 cut(s)	508
Aor13HI	TCCGGA	1 cut(s)	80
AoxI	GGCC	3 cut(s)	113, 395, 540
ApeKI	GCWGC	2 cut(s)	129, 601
ArsI	GACNNNNNNTTYG	2 cut(s)	33, 37
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	3 cut(s)	71, 541, 1034
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	326, 692
AvaII	GGWCC	2 cut(s)	71, 1034
AxyI	CCTNAGG	2 cut(s)	381, 898
BamHI	GGATCC	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	116, 588
BccI	CCATC	5 cut(s)	49, 444, 482, 869, 1091
BceAI	ACGGC	2 cut(s)	128, 154
BciVI	GTATCC	1 cut(s)	486
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	2 cut(s)	848, 1067
BfaI	CTAG	1 cut(s)	999
BfuI	GTATCC	1 cut(s)	486
BisI	GCNGC	2 cut(s)	130, 602
BlsI	GCNGC	2 cut(s)	131, 603
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	2 cut(s)	71, 1034
BmeRI	GACNNNNNGTC	1 cut(s)	69
BmgT120I	GGNCC	3 cut(s)	71, 541, 1034
BmiI	GGNNCC	2 cut(s)	405, 543
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	3 cut(s)	565, 673, 1046
BpiI	GAAGAC	1 cut(s)	561
BpuMI	CCSGG	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	1067
BsaJI	CCNNGG	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 80, 150
Bse21I	CCTNAGG	2 cut(s)	381, 898
Bse3DI	GCAATG	1 cut(s)	53
BseAI	TCCGGA	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	2 cut(s)	243, 948
BseLI	CCNNNNNNNGG	3 cut(s)	68, 80, 150
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	5 cut(s)	191, 372, 515, 885, 912
BseRI	GAGGAG	1 cut(s)	971
BseXI	GCAGC	2 cut(s)	116, 588
Bsh1236I	CGCG	1 cut(s)	239
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	3 cut(s)	115, 397, 542
BsiEI	CGRYCG	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	81, 233
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	3 cut(s)	68, 80, 150
BsmAI	GTCTC	2 cut(s)	848, 1067
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	3 cut(s)	115, 397, 542
Bso31I	GGTCTC	1 cut(s)	1067
Bsp13I	TCCGGA	1 cut(s)	80
Bsp143I	GATC	4 cut(s)	403, 432, 446, 691
BspACI	CCGC	2 cut(s)	300, 1029
BspANI	GGCC	3 cut(s)	115, 397, 542
BspCNI	CTCAG	5 cut(s)	190, 373, 514, 884, 911
BspEI	TCCGGA	1 cut(s)	80
BspFNI	CGCG	1 cut(s)	239
BspLI	GGNNCC	2 cut(s)	405, 543
BspPI	GGATC	3 cut(s)	398, 411, 427
BspQI	GCTCTTC	1 cut(s)	1139
BspTNI	GGTCTC	1 cut(s)	1067
BsrDI	GCAATG	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	4 cut(s)	403, 432, 446, 691
BssT1I	CCWWGG	1 cut(s)	392
Bst6I	CTCTTC	5 cut(s)	738, 948, 1040, 1082, 1139
BstDEI	CTNAG	6 cut(s)	177, 381, 501, 871, 898, 934
BstF5I	GGATG	2 cut(s)	243, 948
BstFNI	CGCG	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	4 cut(s)	406, 435, 449, 694
BstMAI	GTCTC	2 cut(s)	848, 1067
BstMBI	GATC	4 cut(s)	403, 432, 446, 691
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 610
BstNSI	RCATGY	2 cut(s)	324, 1133
BstSCI	CCNGG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	2 cut(s)	116, 588
BstV2I	GAAGAC	1 cut(s)	561
BstX2I	RGATCY	2 cut(s)	403, 432
BstYI	RGATCY	2 cut(s)	403, 432
Bsu36I	CCTNAGG	2 cut(s)	381, 898
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	3 cut(s)	115, 397, 542
BtsCI	GGATG	2 cut(s)	243, 948
CaiI	CAGNNNCTG	1 cut(s)	508
CfoI	GCGC	1 cut(s)	606
Cfr13I	GGNCC	3 cut(s)	71, 541, 1034
CseI	GACGC	2 cut(s)	602, 733
CviAII	CATG	2 cut(s)	321, 1130
DdeI	CTNAG	6 cut(s)	177, 381, 501, 871, 898, 934
DpnI	GATC	4 cut(s)	405, 434, 448, 693
DpnII	GATC	4 cut(s)	403, 432, 446, 691
DraI	TTTAAA	1 cut(s)	1126
DraIII	CACNNNGTG	1 cut(s)	863
DriI	GACNNNNNGTC	1 cut(s)	69
Eam1104I	CTCTTC	5 cut(s)	738, 948, 1040, 1082, 1139
Eam1105I	GACNNNNNGTC	1 cut(s)	69
EarI	CTCTTC	5 cut(s)	738, 948, 1040, 1082, 1139
Eco130I	CCWWGG	1 cut(s)	392
Eco147I	AGGCCT	1 cut(s)	397
Eco31I	GGTCTC	1 cut(s)	1067
Eco47I	GGWCC	2 cut(s)	71, 1034
Eco57I	CTGAAG	2 cut(s)	468, 713
Eco81I	CCTNAGG	2 cut(s)	381, 898
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	2 cut(s)	324, 1133
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	2 cut(s)	320, 1129
FauI	CCCGC	1 cut(s)	293
FauNDI	CATATG	1 cut(s)	1117
Fnu4HI	GCNGC	2 cut(s)	130, 602
FokI	GGATG	2 cut(s)	230, 955
Fsp4HI	GCNGC	2 cut(s)	130, 602
FspBI	CTAG	1 cut(s)	999
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	2 cut(s)	130, 602
HaeIII	GGCC	3 cut(s)	115, 397, 542
HapII	CCGG	2 cut(s)	81, 233
HgaI	GACGC	2 cut(s)	602, 733
HhaI	GCGC	1 cut(s)	606
Hin1II	CATG	2 cut(s)	324, 1133
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HindIII	AAGCTT	1 cut(s)	827
HinfI	GANTC	2 cut(s)	107, 189
HpaII	CCGG	2 cut(s)	81, 233
HphI	GGTGA	2 cut(s)	326, 692
Hpy166II	GTNNAC	3 cut(s)	592, 868, 1034
Hpy188I	TCNGA	9 cut(s)	25, 46, 63, 75, 180, 212, 487, 696, 874
Hpy188III	TCNNGA	6 cut(s)	81, 98, 227, 401, 508, 617
Hpy8I	GTNNAC	3 cut(s)	592, 868, 1034
HpyAV	CCTTC	6 cut(s)	62, 276, 332, 671, 827, 1019
HpyCH4IV	ACGT	2 cut(s)	765, 781
HpyCH4V	TGCA	4 cut(s)	332, 578, 686, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 610
HpyF3I	CTNAG	6 cut(s)	177, 381, 501, 871, 898, 934
HpySE526I	ACGT	2 cut(s)	765, 781
Hsp92II	CATG	2 cut(s)	324, 1133
HspAI	GCGC	1 cut(s)	604
Kpn2I	TCCGGA	1 cut(s)	80
Kzo9I	GATC	4 cut(s)	403, 432, 446, 691
LguI	GCTCTTC	1 cut(s)	1139
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	8 cut(s)	94, 246, 297, 386, 393, 521, 630, 885
Lsp1109I	GCAGC	2 cut(s)	116, 588
LweI	GCATC	3 cut(s)	565, 673, 1046
MaeI	CTAG	1 cut(s)	999
MaeII	ACGT	2 cut(s)	765, 781
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	4 cut(s)	405, 434, 448, 693
MboI	GATC	4 cut(s)	403, 432, 446, 691
MflI	RGATCY	2 cut(s)	403, 432
MluCI	AATT	3 cut(s)	139, 425, 1082
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	86
MroI	TCCGGA	1 cut(s)	80
MseI	TTAA	5 cut(s)	672, 891, 974, 1005, 1125
MslI	CAYNNNNRTG	2 cut(s)	124, 312
MspI	CCGG	2 cut(s)	81, 233
MspR9I	CCNGG	1 cut(s)	233
MssI	GTTTAAAC	1 cut(s)	1126
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	2 cut(s)	55, 610
NciI	CCSGG	1 cut(s)	233
NdeI	CATATG	1 cut(s)	1117
NdeII	GATC	4 cut(s)	403, 432, 446, 691
NlaIII	CATG	2 cut(s)	324, 1133
NlaIV	GGNNCC	2 cut(s)	405, 543
NmeAIII	GCCGAG	1 cut(s)	518
NmuCI	GTSAC	1 cut(s)	7
NspI	RCATGY	2 cut(s)	324, 1133
OliI	CACNNNNGTG	1 cut(s)	312
PceI	AGGCCT	1 cut(s)	397
PciI	ACATGT	1 cut(s)	1129
PciSI	GCTCTTC	1 cut(s)	1139
PfeI	GAWTC	1 cut(s)	107
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	131, 603
PleI	GAGTC	1 cut(s)	197
PmeI	GTTTAAAC	1 cut(s)	1126
PpsI	GAGTC	1 cut(s)	197
PscI	ACATGT	1 cut(s)	1129
PsiI	TTATAA	1 cut(s)	290
Psp1406I	AACGTT	2 cut(s)	765, 781
PspN4I	GGNNCC	2 cut(s)	405, 543
PspPI	GGNCC	3 cut(s)	71, 541, 1034
PsrI	GAACNNNNNNTAC	2 cut(s)	644, 676
PstNI	CAGNNNCTG	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	403, 432
PsyI	GACNNNGTC	1 cut(s)	233
RseI	CAYNNNNRTG	2 cut(s)	124, 312
SapI	GCTCTTC	1 cut(s)	1139
SaqAI	TTAA	5 cut(s)	672, 891, 974, 1005, 1125
SatI	GCNGC	2 cut(s)	130, 602
Sau3AI	GATC	4 cut(s)	403, 432, 446, 691
Sau96I	GGNCC	3 cut(s)	71, 541, 1034
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	233
SfaNI	GCATC	3 cut(s)	565, 673, 1046
SinI	GGWCC	2 cut(s)	71, 1034
SmiMI	CAYNNNNRTG	2 cut(s)	124, 312
Sse9I	AATT	3 cut(s)	139, 425, 1082
SseBI	AGGCCT	1 cut(s)	397
SsiI	CCGC	2 cut(s)	300, 1029
SspMI	CTAG	1 cut(s)	999
StuI	AGGCCT	1 cut(s)	397
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	392
TaiI	ACGT	2 cut(s)	768, 784
TaqI	TCGA	1 cut(s)	552
TasI	AATT	3 cut(s)	139, 425, 1082
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	5 cut(s)	672, 891, 974, 1005, 1125
Tru9I	TTAA	5 cut(s)	672, 891, 974, 1005, 1125
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	2 cut(s)	129, 601
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	4 cut(s)	232, 245, 959, 1002
TspGWI	ACGGA	1 cut(s)	648
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	2 cut(s)	71, 1034
XceI	RCATGY	2 cut(s)	324, 1133
XspI	CTAG	1 cut(s)	999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.