Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Forward (+)

7043628 .. 7044592

Gene Structure 965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGAACTCCAGAATCATCGAGAGAGCCATGTCCGGATCGGATCCTAGATGATGTCGGAGGTGCGTTTGCGATGGGTGCTGTTGGTGGATCAGCGTATCACCTCATAAGAGGAATCTACAACTCTCCCGGCGGAGCTCGTCTCTCCGGCGGCGTTCAAGCTTTGAGAATGAGCGGGCCGAGAAGCGGAGGAAGCTTCTCCGTGTGGGGTGGTCTTTACTCAACCTTCGATTGTGCGTTGGTGTACGCAAGACAAAAGGAAGATCCATGGAACTCGATCTTATCTGGTGCAGCCACTGGAGGATTCCTCTCGTTGCGTCAAGGCTTAGGCGCGTCTGCTAGATCGGCTTTAGTCGGAGGTGTGTTGTTGGCTATGATAGAAGGAGTTGGTATCATGTTAAACAAAGTTCAGAGTACTGCGCATAACGAGCAGTTCATGGAGGATCATGCAGCTACTTCTTTACCATATGGTATGGGTCAGATATCTGGTCAGTCCGTACCGGTACCGGAGACTTCTTCTTCTTCTTCTGGTTCGGTATCTTGGTTTGGGAGTTTGTTTAAGAAGAAGAAAGAAACAGAGGATCATCATTCAGAGAGCAGAACTCACATTTTGGAGAGCTTTGATGCTCCTCCTGTGCCTACTTATGAGTTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

218

Amino Acids

22.91

Weight (kDa)

6.06

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	15 - 122	2.6e-30	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	420
Acc65I	GGTACC	1 cut(s)	502
AccB1I	GGYRCC	1 cut(s)	502
AccBSI	CCGCTC	1 cut(s)	174
AccII	CGCG	1 cut(s)	332
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	4 cut(s)	132, 150, 174, 186
AclWI	GGATC	7 cut(s)	37, 45, 50, 97, 257, 450, 588
AfaI	GTAC	4 cut(s)	245, 415, 498, 504
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgeI	ACCGGT	1 cut(s)	499
AgsI	TTSAA	1 cut(s)	158
AluBI	AGCT	5 cut(s)	137, 161, 195, 452, 618
AluI	AGCT	5 cut(s)	137, 161, 195, 452, 618
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	2 cut(s)	146, 503
AlwI	GGATC	7 cut(s)	37, 45, 50, 97, 257, 450, 588
AlwNI	CAGNNNCTG	1 cut(s)	296
Aor13HI	TCCGGA	1 cut(s)	34
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	290, 449
AsiGI	ACCGGT	1 cut(s)	499
Asp718I	GGTACC	1 cut(s)	502
AspLEI	GCGC	2 cut(s)	332, 421
AspS9I	GGNCC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	42
BanI	GGYRCC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	302, 461
BccI	CCATC	1 cut(s)	67
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	146, 503
BfaI	CTAG	2 cut(s)	47, 339
BisI	GCNGC	3 cut(s)	151, 291, 450
BlsI	GCNGC	3 cut(s)	152, 292, 451
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	44, 504
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	613
BplI	GAGNNNNNCTC	6 cut(s)	126, 158, 291, 323, 586, 618
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	325
BpuMI	CCSGG	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	266
BsaWI	WCCGGW	3 cut(s)	34, 499, 505
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse118I	RCCGGY	1 cut(s)	499
Bse1I	ACTGG	1 cut(s)	301
BseAI	TCCGGA	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	618
BseXI	GCAGC	2 cut(s)	302, 461
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	1 cut(s)	178
BshNI	GGYRCC	1 cut(s)	502
BshTI	ACCGGT	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	5 cut(s)	35, 129, 147, 500, 506
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	2 cut(s)	146, 503
BsmBI	CGTCTC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp13I	TCCGGA	1 cut(s)	34
Bsp143I	GATC	8 cut(s)	37, 42, 89, 262, 276, 341, 442, 580
Bsp19I	CCATGG	1 cut(s)	266
BspACI	CCGC	4 cut(s)	132, 150, 174, 186
BspANI	GGCC	1 cut(s)	178
BspEI	TCCGGA	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	332
BspLI	GGNNCC	2 cut(s)	44, 504
BspPI	GGATC	7 cut(s)	37, 45, 50, 97, 257, 450, 588
BspT107I	GGYRCC	1 cut(s)	502
BsrBI	CCGCTC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	499
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	8 cut(s)	37, 42, 89, 262, 276, 341, 442, 580
BssT1I	CCWWGG	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	325
BstDSI	CCRYGG	1 cut(s)	266
BstFNI	CGCG	1 cut(s)	332
BstHHI	GCGC	2 cut(s)	332, 421
BstKTI	GATC	8 cut(s)	40, 45, 92, 265, 279, 344, 445, 583
BstMAI	GTCTC	2 cut(s)	146, 503
BstMBI	GATC	8 cut(s)	37, 42, 89, 262, 276, 341, 442, 580
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 192, 344, 427
BstSCI	CCNGG	1 cut(s)	127
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	302, 461
BstX2I	RGATCY	2 cut(s)	42, 262
BstYI	RGATCY	2 cut(s)	42, 262
BsuRI	GGCC	1 cut(s)	178
BtgI	CCRYGG	1 cut(s)	266
BtgZI	GCGATG	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	176
CaiI	CAGNNNCTG	1 cut(s)	296
CfoI	GCGC	2 cut(s)	332, 421
Cfr10I	RCCGGY	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	176
CseI	GACGC	2 cut(s)	305, 321
Csp6I	GTAC	4 cut(s)	244, 414, 497, 503
CspAI	ACCGGT	1 cut(s)	499
CviAII	CATG	5 cut(s)	30, 267, 394, 436, 446
CviQI	GTAC	4 cut(s)	244, 414, 497, 503
DdeI	CTNAG	1 cut(s)	325
DpnI	GATC	8 cut(s)	39, 44, 91, 264, 278, 343, 444, 582
DpnII	GATC	8 cut(s)	37, 42, 89, 262, 276, 341, 442, 580
EciI	GGCGGA	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	139
Eco32I	GATATC	1 cut(s)	483
Eco53kI	GAGCTC	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	137
EcoRV	GATATC	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	266
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	5 cut(s)	33, 270, 397, 439, 449
FatI	CATG	5 cut(s)	29, 266, 393, 435, 445
FauI	CCCGC	1 cut(s)	167
FauNDI	CATATG	1 cut(s)	466
Fnu4HI	GCNGC	3 cut(s)	151, 291, 450
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	3 cut(s)	151, 291, 450
FspBI	CTAG	2 cut(s)	47, 339
FspI	TGCGCA	1 cut(s)	420
GlaI	GCGC	2 cut(s)	331, 420
GluI	GCNGC	3 cut(s)	151, 291, 450
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	5 cut(s)	35, 129, 147, 500, 506
HgaI	GACGC	2 cut(s)	305, 321
HhaI	GCGC	2 cut(s)	332, 421
Hin1II	CATG	5 cut(s)	33, 270, 397, 439, 449
Hin6I	GCGC	2 cut(s)	330, 419
HinP1I	GCGC	2 cut(s)	330, 419
HindIII	AAGCTT	2 cut(s)	159, 193
HinfI	GANTC	3 cut(s)	14, 114, 303
HpaII	CCGG	5 cut(s)	35, 129, 147, 500, 506
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	6 cut(s)	42, 59, 356, 411, 480, 592
Hpy188III	TCNNGA	3 cut(s)	11, 21, 35
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	2 cut(s)	235, 374
HpyCH4V	TGCA	2 cut(s)	290, 449
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 192, 344, 427
HpyF3I	CTNAG	1 cut(s)	325
Hsp92II	CATG	5 cut(s)	33, 270, 397, 439, 449
HspAI	GCGC	2 cut(s)	330, 419
Kpn2I	TCCGGA	1 cut(s)	34
KpnI	GGTACC	1 cut(s)	506
Kzo9I	GATC	8 cut(s)	37, 42, 89, 262, 276, 341, 442, 580
LmnI	GCTCC	2 cut(s)	134, 631
Lsp1109I	GCAGC	2 cut(s)	302, 461
LweI	GCATC	1 cut(s)	613
MaeI	CTAG	2 cut(s)	47, 339
MalI	GATC	8 cut(s)	39, 44, 91, 264, 278, 343, 444, 582
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	8 cut(s)	37, 42, 89, 262, 276, 341, 442, 580
MboII	GAAGA	7 cut(s)	272, 507, 510, 513, 516, 574, 577
MflI	RGATCY	2 cut(s)	42, 262
MhlI	GDGCHC	1 cut(s)	139
MmeI	TCCRAC	2 cut(s)	37, 334
MroI	TCCGGA	1 cut(s)	34
MseI	TTAA	3 cut(s)	398, 558, 651
MspI	CCGG	5 cut(s)	35, 129, 147, 500, 506
MspR9I	CCNGG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	4 cut(s)	77, 192, 344, 427
NciI	CCSGG	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	266
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	8 cut(s)	37, 42, 89, 262, 276, 341, 442, 580
NlaIII	CATG	5 cut(s)	33, 270, 397, 439, 449
NlaIV	GGNNCC	2 cut(s)	44, 504
NmeAIII	GCCGAG	1 cut(s)	204
NsbI	TGCGCA	1 cut(s)	420
PfeI	GAWTC	3 cut(s)	14, 114, 303
PinAI	ACCGGT	1 cut(s)	499
PkrI	GCNGC	3 cut(s)	152, 292, 451
Psp124BI	GAGCTC	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	44, 504
PspPI	GGNCC	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	42, 262
RsaI	GTAC	4 cut(s)	245, 415, 498, 504
RsaNI	GTAC	4 cut(s)	244, 414, 497, 503
SacI	GAGCTC	1 cut(s)	139
SaqAI	TTAA	3 cut(s)	398, 558, 651
SatI	GCNGC	3 cut(s)	151, 291, 450
Sau3AI	GATC	8 cut(s)	37, 42, 89, 262, 276, 341, 442, 580
Sau96I	GGNCC	1 cut(s)	176
ScaI	AGTACT	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	9 cut(s)	64, 105, 139, 163, 197, 227, 361, 454, 620
SfaNI	GCATC	1 cut(s)	613
SsiI	CCGC	4 cut(s)	132, 150, 174, 186
SspMI	CTAG	2 cut(s)	47, 339
SstI	GAGCTC	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	266
TaqI	TCGA	3 cut(s)	20, 228, 275
TatI	WGTACW	1 cut(s)	413
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	3 cut(s)	14, 114, 303
Tru1I	TTAA	3 cut(s)	398, 558, 651
Tru9I	TTAA	3 cut(s)	398, 558, 651
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	2 cut(s)	290, 449
TspDTI	ATGAA	1 cut(s)	424
TspGWI	ACGGA	2 cut(s)	190, 484
TspRI	CASTG	1 cut(s)	301
XspI	CTAG	2 cut(s)	47, 339
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.