Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Forward (+)

8166133 .. 8166363

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG045200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGATGTTCAGAGTGAATGATGTGGGTGGGCTTCCCGGCACTGTTAGGTCTGAAGAAAGCTCCTCCGGTGGGTCCTGGTTGGGAGGGTGGGTTGGGAAACGCAAAGAGCCTAAGCCGGCGAGCAGCGGAAGCGAGATGAAGGTTCTGGAGAGTTTTGATGCACCTCCAGTGCCAGTTTTGATTCAGACCACGAAAACTGCTGACATGTGGGCGGATTCGAGGAGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

76

Amino Acids

8.24

Weight (kDa)

8.1

Isoelectric Point (pI)

71.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	126, 212
AcuI	CTGAAG	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	69
AflIII	ACRYGT	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	1 cut(s)	60
AluI	AGCT	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	36
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	36, 76
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	2 cut(s)	36, 76
BmsI	GCATC	1 cut(s)	148
BpmI	CTGGAG	2 cut(s)	150, 167
Bpu10I	CCTNAGC	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	65
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	167, 173
BseBI	CCWGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseNI	ACTGG	2 cut(s)	167, 173
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	135
BsiSI	CCGG	3 cut(s)	36, 66, 116
BslI	CCNNNNNNNGG	1 cut(s)	69
BspACI	CCGC	2 cut(s)	126, 212
BspLI	GGNNCC	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	167, 173
BssAI	RCCGGY	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	117, 121
BstDEI	CTNAG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	76
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	2 cut(s)	34, 74
BstV1I	GCAGC	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	39, 174
Cac8I	GCNNGC	2 cut(s)	117, 121
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	72
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	4 cut(s)	31, 60, 109, 115
CviKI_1	RGCY	4 cut(s)	31, 60, 109, 115
DdeI	CTNAG	1 cut(s)	111
EciI	GGCGGA	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	74
FaeI	CATG	1 cut(s)	208
FaiI	YATR	1 cut(s)	206
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	124
GluI	GCNGC	1 cut(s)	124
GsuI	CTGGAG	2 cut(s)	150, 167
HapII	CCGG	3 cut(s)	36, 66, 116
Hin1II	CATG	1 cut(s)	208
HinfI	GANTC	2 cut(s)	181, 215
HpaII	CCGG	3 cut(s)	36, 66, 116
Hpy188I	TCNGA	3 cut(s)	11, 52, 186
Hpy188III	TCNNGA	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	208
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	8 cut(s)	49, 61, 79, 88, 129, 131, 180, 186
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	1 cut(s)	148
MboII	GAAGA	1 cut(s)	65
MnlI	CCTC	5 cut(s)	73, 77, 174, 213, 216
MroNI	GCCGGC	1 cut(s)	115
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	3 cut(s)	36, 66, 116
MspR9I	CCNGG	2 cut(s)	36, 76
MvaI	CCWGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	129
NaeI	GCCGGC	1 cut(s)	117
NciI	CCSGG	1 cut(s)	36
NgoMIV	GCCGGC	1 cut(s)	115
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	208
PciI	ACATGT	1 cut(s)	204
PdiI	GCCGGC	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	181, 215
PkrI	GCNGC	1 cut(s)	125
PpuMI	RGGWCCY	1 cut(s)	72
PscI	ACATGT	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	72
PspPPI	RGGWCCY	1 cut(s)	72
SatI	GCNGC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	72
ScrFI	CCNGG	2 cut(s)	36, 76
SetI	ASST	5 cut(s)	50, 62, 144, 166, 227
SfaNI	GCATC	1 cut(s)	148
SinI	GGWCC	1 cut(s)	72
SsiI	CCGC	2 cut(s)	126, 212
StyD4I	CCNGG	2 cut(s)	34, 74
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	218
TfiI	GAWTC	2 cut(s)	181, 215
TscAI	CASTG	2 cut(s)	46, 174
TseI	GCWGC	1 cut(s)	123
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	2 cut(s)	46, 174
VpaK11BI	GGWCC	1 cut(s)	72
XceI	RCATGY	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.