Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Reverse (-)

39651735 .. 39651938

Gene Structure 204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG370600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGATGTTCAGAGTGAATGATGTGGGTGGGCCTCTTGGTGCTGTTGGGTCTGAAGAAAGCTCCTCCGGTGGGTCCTGGTTGGGAGGGTGGGTTGGCAAAGGCAAAGAGCCTGAGCCGGCGAGCAGCGGAAGCGAGACGAAGGTTCTGGAGAGTTTTGATGCTCCTCCGGTACCCAGTTTTGATTCGGACCCTGAAAACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

67

Amino Acids

6.84

Weight (kDa)

4.09

Isoelectric Point (pI)

66.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	169
AccB1I	GGYRCC	1 cut(s)	169
AciI	CCGC	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	1 cut(s)	60
AluI	AGCT	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	128
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	123
Asp718I	GGTACC	1 cut(s)	169
AspS9I	GGNCC	3 cut(s)	29, 72, 187
AvaII	GGWCC	2 cut(s)	72, 187
BanI	GGYRCC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	128
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	76
Bme18I	GGWCC	2 cut(s)	72, 187
BmgT120I	GGNCC	3 cut(s)	29, 72, 187
BmiI	GGNNCC	3 cut(s)	73, 171, 189
BmrFI	CCNGG	1 cut(s)	76
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	148
BmuI	ACTGGG	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	111
BsaWI	WCCGGW	2 cut(s)	65, 166
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	174
BseRI	GAGGAG	2 cut(s)	52, 153
BseXI	GCAGC	1 cut(s)	135
BshFI	GGCC	1 cut(s)	31
BshNI	GGYRCC	1 cut(s)	169
BsiSI	CCGG	3 cut(s)	66, 116, 167
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	128
BsmBI	CGTCTC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	31
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	3 cut(s)	73, 171, 189
BspT107I	GGYRCC	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	174
BssAI	RCCGGY	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	117, 121
BstDEI	CTNAG	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	128
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	31
Cac8I	GCNNGC	2 cut(s)	117, 121
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	3 cut(s)	29, 72, 187
Csp6I	GTAC	1 cut(s)	170
CviJI	RGCY	4 cut(s)	31, 60, 109, 115
CviKI_1	RGCY	4 cut(s)	31, 60, 109, 115
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	1 cut(s)	111
Eco47I	GGWCC	2 cut(s)	72, 187
Eco57I	CTGAAG	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	74
Esp3I	CGTCTC	1 cut(s)	128
Fnu4HI	GCNGC	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	124
GluI	GCNGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	3 cut(s)	66, 116, 167
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	3 cut(s)	66, 116, 167
Hpy188I	TCNGA	3 cut(s)	11, 52, 187
Hpy188III	TCNNGA	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	133
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	1 cut(s)	111
KpnI	GGTACC	1 cut(s)	173
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	65, 166
LpnPI	CCDG	8 cut(s)	61, 79, 88, 123, 129, 131, 180, 187
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	1 cut(s)	148
MboII	GAAGA	1 cut(s)	65
MnlI	CCTC	4 cut(s)	42, 73, 77, 174
MroNI	GCCGGC	1 cut(s)	115
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	3 cut(s)	66, 116, 167
MspR9I	CCNGG	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	129
NaeI	GCCGGC	1 cut(s)	117
NgoMIV	GCCGGC	1 cut(s)	115
NlaIV	GGNNCC	3 cut(s)	73, 171, 189
PdiI	GCCGGC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	125
PpuMI	RGGWCCY	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	3 cut(s)	73, 171, 189
PspPI	GGNCC	3 cut(s)	29, 72, 187
PspPPI	RGGWCCY	1 cut(s)	72
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SatI	GCNGC	1 cut(s)	124
Sau96I	GGNCC	3 cut(s)	29, 72, 187
ScrFI	CCNGG	1 cut(s)	76
SetI	ASST	2 cut(s)	62, 144
SfaNI	GCATC	1 cut(s)	148
SinI	GGWCC	2 cut(s)	72, 187
SsiI	CCGC	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	123
VpaK11BI	GGWCC	2 cut(s)	72, 187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.