Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031557.1

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 383

Gene Structure 382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031557.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 382 bp

atgggaactccagaaacttctcggcagccgtgcccggaccgaatcctcgacgacgccggcggagccttcgggatgggcgccatcggaggaggcgcgtaccacttcttcaaaggaatctacaactcgcccaggggagcgcgtctctccggcgcgtcccaggccatccgcatgaacgcgccgcgcgtgggcggaggattcgccgtatggggtggcctcttctccaccttcgactgcgcattggtcaacattcggcaaaaagaggacccctggaactcgatcatctccggcgcggccaccggcggcttcctccagatgcggcaggggctcggcgcaacggcgaggtccgccgccgtgggagggatgtttttggccctaatcgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

127

Amino Acids

13.13

Weight (kDa)

9.3

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	235
AccB1I	GGYRCC	1 cut(s)	77
AccII	CGCG	7 cut(s)	95, 139, 152, 176, 181, 183, 290
AciI	CCGC	9 cut(s)	60, 166, 179, 189, 290, 300, 316, 345, 348
AcoI	YGGCCR	1 cut(s)	291
AcyI	GRCGYC	2 cut(s)	54, 78
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	185, 357
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	3 cut(s)	128, 156, 266
Alw26I	GTCTC	1 cut(s)	146
AoxI	GGCC	4 cut(s)	159, 211, 291, 369
ApeKI	GCWGC	1 cut(s)	25
AspLEI	GCGC	9 cut(s)	80, 95, 139, 152, 178, 183, 236, 290, 332
AspS9I	GGNCC	4 cut(s)	37, 262, 342, 370
AsuC2I	CCSGG	1 cut(s)	35
AvaII	GGWCC	3 cut(s)	37, 262, 342
BaeGI	GKGCMC	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	327
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	3 cut(s)	67, 89, 170
BceAI	ACGGC	4 cut(s)	13, 185, 335, 351
BciT130I	CCWGG	3 cut(s)	130, 158, 268
BcnI	CCSGG	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	146
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	6 cut(s)	26, 179, 291, 301, 317, 348
BlsI	GCNGC	6 cut(s)	27, 180, 292, 302, 318, 349
Bme1390I	CCNGG	4 cut(s)	35, 130, 158, 268
Bme18I	GGWCC	3 cut(s)	37, 262, 342
BmgT120I	GGNCC	4 cut(s)	37, 262, 342, 370
BmiI	GGNNCC	3 cut(s)	64, 79, 264
BmrFI	CCNGG	4 cut(s)	35, 130, 158, 268
BmsI	GCATC	1 cut(s)	303
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
BpmI	CTGGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	35
BsaHI	GRCGYC	2 cut(s)	54, 78
BsaJI	CCNNGG	5 cut(s)	128, 129, 156, 266, 351
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 357
Bse118I	RCCGGY	2 cut(s)	56, 296
BseBI	CCWGG	3 cut(s)	130, 158, 268
BseDI	CCNNGG	5 cut(s)	128, 129, 156, 266, 351
BseGI	GGATG	3 cut(s)	78, 162, 366
BseLI	CCNNNNNNNGG	2 cut(s)	185, 357
BseRI	GAGGAG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	37
Bsh1236I	CGCG	7 cut(s)	95, 139, 152, 176, 181, 183, 290
BshFI	GGCC	4 cut(s)	161, 213, 293, 371
BshNI	GGYRCC	1 cut(s)	77
BsiSI	CCGG	5 cut(s)	35, 57, 147, 285, 297
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	2 cut(s)	185, 357
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	4 cut(s)	161, 213, 293, 371
Bsp1286I	GDGCHC	2 cut(s)	35, 327
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	9 cut(s)	60, 166, 179, 189, 290, 300, 316, 345, 348
BspANI	GGCC	4 cut(s)	161, 213, 293, 371
BspFNI	CGCG	7 cut(s)	95, 139, 152, 176, 181, 183, 290
BspLI	GGNNCC	3 cut(s)	64, 79, 264
BspT107I	GGYRCC	1 cut(s)	77
BsrFI	RCCGGY	2 cut(s)	56, 296
BssAI	RCCGGY	2 cut(s)	56, 296
BssECI	CCNNGG	5 cut(s)	128, 129, 156, 266, 351
BssMI	GATC	1 cut(s)	276
BssNI	GRCGYC	2 cut(s)	54, 78
Bst2UI	CCWGG	3 cut(s)	130, 158, 268
Bst6I	CTCTTC	1 cut(s)	221
BstACI	GRCGYC	2 cut(s)	54, 78
BstC8I	GCNNGC	1 cut(s)	58
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	3 cut(s)	78, 162, 366
BstFNI	CGCG	7 cut(s)	95, 139, 152, 176, 181, 183, 290
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	9 cut(s)	80, 95, 139, 152, 178, 183, 236, 290, 332
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 158, 322, 344
BstNI	CCWGG	3 cut(s)	130, 158, 268
BstSCI	CCNGG	4 cut(s)	33, 128, 156, 266
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	7 cut(s)	95, 139, 152, 176, 181, 183, 290
BstV1I	GCAGC	1 cut(s)	37
BsuRI	GGCC	4 cut(s)	161, 213, 293, 371
BtgI	CCRYGG	1 cut(s)	351
BtsCI	GGATG	3 cut(s)	78, 162, 366
Cac8I	GCNNGC	1 cut(s)	58
CfoI	GCGC	9 cut(s)	80, 95, 139, 152, 178, 183, 236, 290, 332
Cfr10I	RCCGGY	2 cut(s)	56, 296
Cfr13I	GGNCC	4 cut(s)	37, 262, 342, 370
CpoI	CGGWCCG	1 cut(s)	37
CseI	GACGC	3 cut(s)	62, 128, 141
Csp6I	GTAC	1 cut(s)	97
CspI	CGGWCCG	1 cut(s)	37
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	8 cut(s)	28, 65, 161, 213, 293, 303, 325, 371
CviKI_1	RGCY	8 cut(s)	28, 65, 161, 213, 293, 303, 325, 371
CviQI	GTAC	1 cut(s)	97
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
EciI	GGCGGA	3 cut(s)	75, 204, 334
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	3 cut(s)	37, 262, 342
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	3 cut(s)	128, 156, 266
EcoT38I	GRGCYC	1 cut(s)	327
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	1 cut(s)	172
FaiI	YATR	2 cut(s)	170, 205
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	1 cut(s)	168
Fnu4HI	GCNGC	6 cut(s)	26, 179, 291, 301, 317, 348
FokI	GGATG	3 cut(s)	85, 149, 373
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	6 cut(s)	26, 179, 291, 301, 317, 348
FspI	TGCGCA	1 cut(s)	235
GlaI	GCGC	9 cut(s)	79, 94, 138, 151, 177, 182, 235, 289, 331
GluI	GCNGC	6 cut(s)	26, 179, 291, 301, 317, 348
GsuI	CTGGAG	1 cut(s)	293
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	4 cut(s)	161, 213, 293, 371
HapII	CCGG	5 cut(s)	35, 57, 147, 285, 297
HgaI	GACGC	3 cut(s)	62, 128, 141
HhaI	GCGC	9 cut(s)	80, 95, 139, 152, 178, 183, 236, 290, 332
Hin1I	GRCGYC	2 cut(s)	54, 78
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	9 cut(s)	78, 93, 137, 150, 176, 181, 234, 288, 330
HinP1I	GCGC	9 cut(s)	78, 93, 137, 150, 176, 181, 234, 288, 330
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	3 cut(s)	42, 114, 195
HpaII	CCGG	5 cut(s)	35, 57, 147, 285, 297
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	3 cut(s)	11, 70, 310
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	2 cut(s)	53, 56
HpyAV	CCTTC	2 cut(s)	76, 235
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 158, 322, 344
Hsp92I	GRCGYC	2 cut(s)	54, 78
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	9 cut(s)	78, 93, 137, 150, 176, 181, 234, 288, 330
KasI	GGCGCC	1 cut(s)	77
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	2 cut(s)	62, 134
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	303
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	2 cut(s)	97, 208
MhlI	GDGCHC	2 cut(s)	35, 327
Mly113I	GGCGCC	1 cut(s)	78
MnlI	CCTC	9 cut(s)	56, 80, 83, 185, 224, 253, 317, 333, 350
MreI	CGCCGGCG	1 cut(s)	56
MroNI	GCCGGC	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	5 cut(s)	35, 57, 147, 285, 297
MspR9I	CCNGG	4 cut(s)	35, 130, 158, 268
MteI	GCGCNGCGC	1 cut(s)	179
MvaI	CCWGG	3 cut(s)	130, 158, 268
MvnI	CGCG	7 cut(s)	95, 139, 152, 176, 181, 183, 290
MwoI	GCNNNNNNNGC	4 cut(s)	62, 158, 322, 344
NaeI	GCCGGC	1 cut(s)	58
NarI	GGCGCC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	1 cut(s)	276
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	3 cut(s)	64, 79, 264
NmeAIII	GCCGAG	1 cut(s)	306
NsbI	TGCGCA	1 cut(s)	235
PasI	CCCWGGG	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PdiI	GCCGGC	1 cut(s)	58
PfeI	GAWTC	3 cut(s)	42, 114, 195
PkrI	GCNGC	6 cut(s)	27, 180, 292, 302, 318, 349
PluTI	GGCGCC	1 cut(s)	81
PpuMI	RGGWCCY	1 cut(s)	262
Psp5II	RGGWCCY	1 cut(s)	262
Psp6I	CCWGG	3 cut(s)	128, 156, 266
PspGI	CCWGG	3 cut(s)	128, 156, 266
PspN4I	GGNNCC	3 cut(s)	64, 79, 264
PspPI	GGNCC	4 cut(s)	37, 262, 342, 370
PspPPI	RGGWCCY	1 cut(s)	262
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	167
Rsr2I	CGGWCCG	1 cut(s)	37
RsrII	CGGWCCG	1 cut(s)	37
SatI	GCNGC	6 cut(s)	26, 179, 291, 301, 317, 348
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	4 cut(s)	37, 262, 342, 370
ScrFI	CCNGG	4 cut(s)	35, 130, 158, 268
SduI	GDGCHC	2 cut(s)	35, 327
SetI	ASST	2 cut(s)	227, 344
SfaNI	GCATC	1 cut(s)	303
SfoI	GGCGCC	1 cut(s)	79
SgrAI	CRCCGGYG	2 cut(s)	56, 296
SinI	GGWCC	3 cut(s)	37, 262, 342
SmiMI	CAYNNNNRTG	1 cut(s)	167
SsiI	CCGC	9 cut(s)	60, 166, 179, 189, 290, 300, 316, 345, 348
SspDI	GGCGCC	1 cut(s)	77
StyD4I	CCNGG	4 cut(s)	33, 128, 156, 266
TaqI	TCGA	4 cut(s)	48, 228, 275, 378
TaqII	GACCGA	1 cut(s)	54
TauI	GCSGC	5 cut(s)	181, 293, 303, 319, 350
TfiI	GAWTC	3 cut(s)	42, 114, 195
TseI	GCWGC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	185
VpaK11BI	GGWCC	3 cut(s)	37, 262, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.