Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Reverse (-)

87153409 .. 87154204

Gene Structure 796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00149610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGTGTCATCGGAGGAGGCGCGTTCCACTTCTTCAAAGGAATCTACAACTCGCCCAGGGGAGCGCGTCTCTCCGGCGCGTCCCAGGCCATCCGCATGAACGCGCCGCGCGTGGGCGGAGGATTCGCCGTATGGGGCGGCGTCTTCTCCACCTTCGACTGCGCATTGGTCAACATTCGGCAAAAAGAGGACCCCTGGAACTCGATCATCTCCGGCGCGGCCACCGGCGGCTTCCTCCAGATGAGGCAGGGGCTCGGCGCAACGGCGAGGTCCGCCGCCGTGGGAGGGATGTTTTTGGCCCTAATCGAAGGCGCCGGGATCATTGTGGGCAAGTACATGGAGCAGAAACAGAATGAGATGGCGATAGCTGCTGGTATGCACGGTCTGCCTGGACCGGAGGCGGTTGGGTCGGAAGGAAGCTCCTCCGGTGGTTCGTGGTTGGGAGGGTGGTTTGGGAAAGGCAAAGAAGCTGAGGCGGCCGGCAGCGGAAGCGGAAGCGAGACGAAGGTTCTGGAGAGTTTTGATGCGCCTCCGGTGCCGAGTTTTGAGTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

185

Amino Acids

18.87

Weight (kDa)

7.88

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	1 - 98	1.1e-27	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	163
AccB1I	GGYRCC	2 cut(s)	311, 535
AccII	CGCG	7 cut(s)	23, 67, 80, 104, 109, 111, 218
AclWI	GGATC	1 cut(s)	326
AcoI	YGGCCR	2 cut(s)	219, 477
AcyI	GRCGYC	2 cut(s)	141, 312
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	113, 285
AgsI	TTSAA	2 cut(s)	37, 553
AjnI	CCWGG	4 cut(s)	56, 84, 194, 388
AluBI	AGCT	3 cut(s)	368, 420, 470
AluI	AGCT	3 cut(s)	368, 420, 470
Alw26I	GTCTC	2 cut(s)	74, 494
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	4 cut(s)	87, 219, 297, 477
ApeKI	GCWGC	2 cut(s)	368, 483
AspS9I	GGNCC	4 cut(s)	190, 270, 298, 392
AsuC2I	CCSGG	1 cut(s)	316
AvaII	GGWCC	3 cut(s)	190, 270, 392
BanI	GGYRCC	2 cut(s)	311, 535
BanII	GRGCYC	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	136
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	355, 495
BccI	CCATC	2 cut(s)	98, 352
BceAI	ACGGC	3 cut(s)	113, 263, 279
BciT130I	CCWGG	4 cut(s)	58, 86, 196, 390
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	2 cut(s)	74, 494
BfoI	RGCGCY	1 cut(s)	315
BisI	GCNGC	8 cut(s)	107, 139, 219, 229, 276, 369, 477, 484
BlsI	GCNGC	8 cut(s)	108, 140, 220, 230, 277, 370, 478, 485
Bme1390I	CCNGG	5 cut(s)	58, 86, 196, 316, 390
Bme18I	GGWCC	3 cut(s)	190, 270, 392
BmgT120I	GGNCC	4 cut(s)	190, 270, 298, 392
BmiI	GGNNCC	3 cut(s)	192, 313, 537
BmrFI	CCNGG	5 cut(s)	58, 86, 196, 316, 390
BmsI	GCATC	1 cut(s)	514
BpiI	GAAGAC	1 cut(s)	136
BplI	GAGNNNNNCTC	2 cut(s)	54, 86
BpmI	CTGGAG	2 cut(s)	221, 533
Bpu10I	CCTNAGC	1 cut(s)	471
BpuMI	CCSGG	1 cut(s)	316
BsaHI	GRCGYC	2 cut(s)	141, 312
BsaJI	CCNNGG	5 cut(s)	56, 57, 84, 194, 279
BsaWI	WCCGGW	3 cut(s)	394, 425, 532
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 285
Bse118I	RCCGGY	2 cut(s)	224, 479
BseBI	CCWGG	4 cut(s)	58, 86, 196, 390
BseDI	CCNNGG	5 cut(s)	56, 57, 84, 194, 279
BseGI	GGATG	2 cut(s)	90, 294
BseLI	CCNNNNNNNGG	2 cut(s)	113, 285
BseMII	CTCAG	1 cut(s)	462
BseRI	GAGGAG	2 cut(s)	30, 412
BseX3I	CGGCCG	1 cut(s)	477
BseXI	GCAGC	2 cut(s)	355, 495
Bsh1236I	CGCG	7 cut(s)	23, 67, 80, 104, 109, 111, 218
Bsh1285I	CGRYCG	1 cut(s)	480
BshFI	GGCC	4 cut(s)	89, 221, 299, 479
BshNI	GGYRCC	2 cut(s)	311, 535
BsiEI	CGRYCG	1 cut(s)	480
BsiSI	CCGG	8 cut(s)	75, 213, 225, 315, 395, 426, 480, 533
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	2 cut(s)	113, 285
BsmAI	GTCTC	2 cut(s)	74, 494
BsmBI	CGTCTC	2 cut(s)	74, 494
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	4 cut(s)	89, 221, 299, 479
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	204, 318
BspANI	GGCC	4 cut(s)	89, 221, 299, 479
BspCNI	CTCAG	1 cut(s)	463
BspFNI	CGCG	7 cut(s)	23, 67, 80, 104, 109, 111, 218
BspLI	GGNNCC	3 cut(s)	192, 313, 537
BspPI	GGATC	1 cut(s)	326
BspT107I	GGYRCC	2 cut(s)	311, 535
BsrFI	RCCGGY	2 cut(s)	224, 479
BssAI	RCCGGY	2 cut(s)	224, 479
BssECI	CCNNGG	5 cut(s)	56, 57, 84, 194, 279
BssMI	GATC	2 cut(s)	204, 318
BssNI	GRCGYC	2 cut(s)	141, 312
Bst2UI	CCWGG	4 cut(s)	58, 86, 196, 390
Bst4CI	ACNGT	1 cut(s)	383
BstACI	GRCGYC	2 cut(s)	141, 312
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	481
BstDEI	CTNAG	1 cut(s)	471
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	90, 294
BstFNI	CGCG	7 cut(s)	23, 67, 80, 104, 109, 111, 218
BstH2I	RGCGCY	1 cut(s)	315
BstKTI	GATC	2 cut(s)	207, 321
BstMAI	GTCTC	2 cut(s)	74, 494
BstMBI	GATC	2 cut(s)	204, 318
BstMCI	CGRYCG	1 cut(s)	480
BstMWI	GCNNNNNNNGC	7 cut(s)	86, 272, 368, 385, 476, 489, 535
BstNI	CCWGG	4 cut(s)	58, 86, 196, 390
BstSCI	CCNGG	5 cut(s)	56, 84, 194, 314, 388
BstUI	CGCG	7 cut(s)	23, 67, 80, 104, 109, 111, 218
BstV1I	GCAGC	2 cut(s)	355, 495
BstV2I	GAAGAC	1 cut(s)	136
BstZI	CGGCCG	1 cut(s)	477
BsuRI	GGCC	4 cut(s)	89, 221, 299, 479
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	90, 294
Cac8I	GCNNGC	1 cut(s)	481
Cfr10I	RCCGGY	2 cut(s)	224, 479
Cfr13I	GGNCC	4 cut(s)	190, 270, 298, 392
CseI	GACGC	3 cut(s)	56, 69, 130
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	2 cut(s)	97, 337
CviJI	RGCY	9 cut(s)	89, 221, 231, 253, 299, 368, 420, 470, 479
CviKI_1	RGCY	9 cut(s)	89, 221, 231, 253, 299, 368, 420, 470, 479
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	1 cut(s)	471
DinI	GGCGCC	1 cut(s)	313
DpnI	GATC	2 cut(s)	206, 320
DpnII	GATC	2 cut(s)	204, 318
EaeI	YGGCCR	2 cut(s)	219, 477
EagI	CGGCCG	1 cut(s)	477
EciI	GGCGGA	2 cut(s)	132, 262
EclXI	CGGCCG	1 cut(s)	477
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	3 cut(s)	190, 270, 392
Eco52I	CGGCCG	1 cut(s)	477
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	4 cut(s)	56, 84, 194, 388
EcoT38I	GRGCYC	1 cut(s)	255
EgeI	GGCGCC	1 cut(s)	313
EheI	GGCGCC	1 cut(s)	313
Esp3I	CGTCTC	2 cut(s)	74, 494
FaeI	CATG	2 cut(s)	100, 340
FaiI	YATR	4 cut(s)	98, 133, 338, 377
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	2 cut(s)	96, 336
Fnu4HI	GCNGC	8 cut(s)	107, 139, 219, 229, 276, 369, 477, 484
FokI	GGATG	2 cut(s)	77, 301
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	8 cut(s)	107, 139, 219, 229, 276, 369, 477, 484
FspI	TGCGCA	1 cut(s)	163
GluI	GCNGC	8 cut(s)	107, 139, 219, 229, 276, 369, 477, 484
GsuI	CTGGAG	2 cut(s)	221, 533
HaeII	RGCGCY	1 cut(s)	315
HaeIII	GGCC	4 cut(s)	89, 221, 299, 479
HapII	CCGG	8 cut(s)	75, 213, 225, 315, 395, 426, 480, 533
HgaI	GACGC	3 cut(s)	56, 69, 130
Hin1I	GRCGYC	2 cut(s)	141, 312
Hin1II	CATG	2 cut(s)	100, 340
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	42, 123
HpaII	CCGG	8 cut(s)	75, 213, 225, 315, 395, 426, 480, 533
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	14, 412
Hpy188III	TCNNGA	2 cut(s)	238, 512
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	4 cut(s)	163, 302, 407, 499
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4V	TGCA	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	7 cut(s)	86, 272, 368, 385, 476, 489, 535
HpyF3I	CTNAG	1 cut(s)	471
Hsp92I	GRCGYC	2 cut(s)	141, 312
Hsp92II	CATG	2 cut(s)	100, 340
KasI	GGCGCC	1 cut(s)	311
KroI	GCCGGC	1 cut(s)	479
KroNI	GCCGGC	1 cut(s)	481
Kzo9I	GATC	2 cut(s)	204, 318
LmnI	GCTCC	3 cut(s)	62, 340, 425
Lsp1109I	GCAGC	2 cut(s)	355, 495
LweI	GCATC	1 cut(s)	514
MalI	GATC	2 cut(s)	206, 320
MboI	GATC	2 cut(s)	204, 318
MboII	GAAGA	2 cut(s)	25, 136
MhlI	GDGCHC	1 cut(s)	255
Mly113I	GGCGCC	1 cut(s)	312
MmeI	TCCRAC	1 cut(s)	390
MroNI	GCCGGC	1 cut(s)	479
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	486
MspI	CCGG	8 cut(s)	75, 213, 225, 315, 395, 426, 480, 533
MspR9I	CCNGG	5 cut(s)	58, 86, 196, 316, 390
MteI	GCGCNGCGC	1 cut(s)	107
MvaI	CCWGG	4 cut(s)	58, 86, 196, 390
MvnI	CGCG	7 cut(s)	23, 67, 80, 104, 109, 111, 218
MwoI	GCNNNNNNNGC	7 cut(s)	86, 272, 368, 385, 476, 489, 535
NaeI	GCCGGC	1 cut(s)	481
NarI	GGCGCC	1 cut(s)	312
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	2 cut(s)	204, 318
NgoMIV	GCCGGC	1 cut(s)	479
NlaIII	CATG	2 cut(s)	100, 340
NlaIV	GGNNCC	3 cut(s)	192, 313, 537
NmeAIII	GCCGAG	1 cut(s)	234
NsbI	TGCGCA	1 cut(s)	163
PasI	CCCWGGG	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PdiI	GCCGGC	1 cut(s)	481
PfeI	GAWTC	2 cut(s)	42, 123
PkrI	GCNGC	8 cut(s)	108, 140, 220, 230, 277, 370, 478, 485
PluTI	GGCGCC	1 cut(s)	315
PpuMI	RGGWCCY	1 cut(s)	190
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	4 cut(s)	56, 84, 194, 388
PspGI	CCWGG	4 cut(s)	56, 84, 194, 388
PspN4I	GGNNCC	3 cut(s)	192, 313, 537
PspPI	GGNCC	4 cut(s)	190, 270, 298, 392
PspPPI	RGGWCCY	1 cut(s)	190
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	95
SatI	GCNGC	8 cut(s)	107, 139, 219, 229, 276, 369, 477, 484
Sau3AI	GATC	2 cut(s)	204, 318
Sau96I	GGNCC	4 cut(s)	190, 270, 298, 392
ScrFI	CCNGG	5 cut(s)	58, 86, 196, 316, 390
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	6 cut(s)	155, 272, 370, 422, 472, 510
SfaNI	GCATC	1 cut(s)	514
SfoI	GGCGCC	1 cut(s)	313
SgrAI	CRCCGGYG	1 cut(s)	224
SinI	GGWCC	3 cut(s)	190, 270, 392
SmiMI	CAYNNNNRTG	1 cut(s)	95
SspDI	GGCGCC	1 cut(s)	311
StyD4I	CCNGG	5 cut(s)	56, 84, 194, 314, 388
TaaI	ACNGT	1 cut(s)	383
TaqI	TCGA	3 cut(s)	156, 203, 306
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	6 cut(s)	109, 141, 221, 231, 278, 479
TfiI	GAWTC	2 cut(s)	42, 123
TseI	GCWGC	2 cut(s)	368, 483
TspDTI	ATGAA	1 cut(s)	113
VpaK11BI	GGWCC	3 cut(s)	190, 270, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.