Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Forward (+)

3263356 .. 3266278

Gene Structure 2923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGGAACTCCAGAAACGTCTCGGGAGCCGTGCCCGGACAGAATCCTGGACGACGCCGGCGGCGCGTTCGGGATGGGCGTAGTCGGAGGAGGCGCGTACCACTTCCTCAAAGGACTCTACAACTCGCCCAAGGGCGCGCGTCTCTACGGCGGCGCGCAGGCACTCCGGATGAACGCGCCGCGCGTGGGCGGGTCCTTCGCCGTGTGGGGCGGCGTTTTCTCCACCTTCGACTGCACGATGGTGTACCTCCGCCAGAAAGAGGACCCCTGGAACTCGATCCTCAGCGGCGCCGCCACCGGCGGGTTCCTCGCGATGCGGCAGGGGATGGGCGCGACGGCGAGGTCCGCCGCCATGGGAGGCGTGCTGTTGGCGCTGATCGAAGGCGCCGGGATCATGCTGACCACCGTGTTGGAGAAGAATCAAAATCAGGCGATTATGATGGAGGACCCTGCTGCTGGTATGACAGGTCTGCCTGGGCCTGAGGCGGAGGGAAGCTCCTCCTCCTCGGTTGGTTCGTGGTTGGGAGGGTGGTTTGGGAAAGGCAAAGAGGCTGAGGCGGCGGCGAGCAGCGGAAGCGAGACCACGATTCTGGAGAGTTTCGATGCGCCTCCGGTGCCGAGTTATGACTACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

212

Amino Acids

21.7

Weight (kDa)

4.91

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	15 - 122	5.7e-30	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	340
AccB1I	GGYRCC	3 cut(s)	287, 383, 613
AccIII	TCCGGA	1 cut(s)	165
AclWI	GGATC	2 cut(s)	271, 398
AcyI	GRCGYC	3 cut(s)	54, 288, 384
AfaI	GTAC	2 cut(s)	98, 245
AfiI	CCNNNNNNNGG	4 cut(s)	185, 259, 300, 455
AjnI	CCWGG	3 cut(s)	45, 266, 472
AleI	CACNNNNGTG	1 cut(s)	239
AluBI	AGCT	1 cut(s)	495
AluI	AGCT	1 cut(s)	495
Alw26I	GTCTC	3 cut(s)	24, 146, 572
AlwI	GGATC	2 cut(s)	271, 398
Ama87I	CYCGRG	1 cut(s)	21
Aor13HI	TCCGGA	1 cut(s)	165
AoxI	GGCC	1 cut(s)	476
ApeKI	GCWGC	2 cut(s)	452, 567
AspS9I	GGNCC	5 cut(s)	192, 262, 342, 445, 476
AsuC2I	CCSGG	2 cut(s)	35, 388
AvaI	CYCGRG	1 cut(s)	21
AvaII	GGWCC	4 cut(s)	192, 262, 342, 445
AxyI	CCTNAGG	1 cut(s)	480
BaeGI	GKGCMC	1 cut(s)	35
BanI	GGYRCC	3 cut(s)	287, 383, 613
BbvCI	CCTCAGC	2 cut(s)	281, 552
BbvI	GCAGC	2 cut(s)	439, 579
BccI	CCATC	4 cut(s)	67, 232, 319, 433
BceAI	ACGGC	4 cut(s)	13, 163, 185, 351
BciT130I	CCWGG	3 cut(s)	47, 268, 474
BcnI	CCSGG	2 cut(s)	35, 388
BcoDI	GTCTC	3 cut(s)	24, 146, 572
BfoI	RGCGCY	3 cut(s)	291, 374, 387
Bme1390I	CCNGG	5 cut(s)	35, 47, 268, 388, 474
Bme18I	GGWCC	4 cut(s)	192, 262, 342, 445
BmeT110I	CYCGRG	1 cut(s)	21
BmgT120I	GGNCC	5 cut(s)	192, 262, 342, 445, 476
BmiI	GGNNCC	8 cut(s)	27, 193, 264, 289, 305, 385, 447, 615
BmrFI	CCNGG	5 cut(s)	35, 47, 268, 388, 474
BmsI	GCATC	2 cut(s)	303, 592
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
BpmI	CTGGAG	1 cut(s)	611
Bpu10I	CCTNAGC	2 cut(s)	281, 552
BpuMI	CCSGG	2 cut(s)	35, 388
BsaHI	GRCGYC	3 cut(s)	54, 288, 384
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	5 cut(s)	129, 266, 351, 473, 504
BsaWI	WCCGGW	2 cut(s)	165, 610
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 259, 300, 455
Bse118I	RCCGGY	2 cut(s)	56, 296
Bse21I	CCTNAGG	1 cut(s)	480
BseAI	TCCGGA	1 cut(s)	165
BseBI	CCWGG	3 cut(s)	47, 268, 474
BseDI	CCNNGG	5 cut(s)	129, 266, 351, 473, 504
BseGI	GGATG	3 cut(s)	78, 174, 330
BseLI	CCNNNNNNNGG	4 cut(s)	185, 259, 300, 455
BseMII	CTCAG	3 cut(s)	295, 471, 543
BsePI	GCGCGC	2 cut(s)	135, 153
BseRI	GAGGAG	4 cut(s)	102, 487, 490, 493
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	439, 579
BsgI	GTGCAG	1 cut(s)	217
BshFI	GGCC	1 cut(s)	478
BshNI	GGYRCC	3 cut(s)	287, 383, 613
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	6 cut(s)	35, 57, 166, 297, 387, 611
BslI	CCNNNNNNNGG	4 cut(s)	185, 259, 300, 455
BsmAI	GTCTC	3 cut(s)	24, 146, 572
BsmBI	CGTCTC	2 cut(s)	24, 146
BsnI	GGCC	1 cut(s)	478
Bso31I	GGTCTC	1 cut(s)	572
BsoBI	CYCGRG	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp13I	TCCGGA	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	276, 375, 390
Bsp19I	CCATGG	1 cut(s)	351
Bsp68I	TCGCGA	1 cut(s)	311
BspANI	GGCC	1 cut(s)	478
BspCNI	CTCAG	3 cut(s)	294, 472, 544
BspEI	TCCGGA	1 cut(s)	165
BspLI	GGNNCC	8 cut(s)	27, 193, 264, 289, 305, 385, 447, 615
BspPI	GGATC	2 cut(s)	271, 398
BspT107I	GGYRCC	3 cut(s)	287, 383, 613
BspTNI	GGTCTC	1 cut(s)	572
BsrFI	RCCGGY	2 cut(s)	56, 296
BssAI	RCCGGY	2 cut(s)	56, 296
BssECI	CCNNGG	5 cut(s)	129, 266, 351, 473, 504
BssHII	GCGCGC	2 cut(s)	135, 153
BssMI	GATC	3 cut(s)	276, 375, 390
BssNI	GRCGYC	3 cut(s)	54, 288, 384
BssT1I	CCWWGG	2 cut(s)	129, 351
Bst2UI	CCWGG	3 cut(s)	47, 268, 474
Bst4CI	ACNGT	1 cut(s)	406
BstACI	GRCGYC	3 cut(s)	54, 288, 384
BstC8I	GCNNGC	6 cut(s)	58, 137, 155, 159, 362, 565
BstDEI	CTNAG	3 cut(s)	281, 480, 552
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	3 cut(s)	78, 174, 330
BstH2I	RGCGCY	3 cut(s)	291, 374, 387
BstKTI	GATC	3 cut(s)	279, 378, 393
BstMAI	GTCTC	3 cut(s)	24, 146, 572
BstMBI	GATC	3 cut(s)	276, 375, 390
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 344, 370, 557, 573, 613
BstNI	CCWGG	3 cut(s)	47, 268, 474
BstSCI	CCNGG	5 cut(s)	33, 45, 266, 386, 472
BstSLI	GKGCMC	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	439, 579
BstXI	CCANNNNNNTGG	2 cut(s)	409, 589
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	478
BtgI	CCRYGG	1 cut(s)	351
BtgZI	GCGATG	1 cut(s)	326
BtsCI	GGATG	3 cut(s)	78, 174, 330
BtuMI	TCGCGA	1 cut(s)	311
Cac8I	GCNNGC	6 cut(s)	58, 137, 155, 159, 362, 565
Cfr10I	RCCGGY	2 cut(s)	56, 296
Cfr13I	GGNCC	5 cut(s)	192, 262, 342, 445, 476
CseI	GACGC	2 cut(s)	62, 128
Csp6I	GTAC	2 cut(s)	97, 244
CviAII	CATG	2 cut(s)	352, 394
CviJI	RGCY	4 cut(s)	28, 478, 495, 551
CviKI_1	RGCY	4 cut(s)	28, 478, 495, 551
CviQI	GTAC	2 cut(s)	97, 244
DdeI	CTNAG	3 cut(s)	281, 480, 552
DinI	GGCGCC	2 cut(s)	289, 385
DpnI	GATC	3 cut(s)	278, 377, 392
DpnII	GATC	3 cut(s)	276, 375, 390
DrdI	GACNNNNNNGTC	1 cut(s)	340
DseDI	GACNNNNNNGTC	1 cut(s)	340
EciI	GGCGGA	3 cut(s)	239, 334, 500
Eco130I	CCWWGG	2 cut(s)	129, 351
Eco31I	GGTCTC	1 cut(s)	572
Eco47I	GGWCC	4 cut(s)	192, 262, 342, 445
Eco81I	CCTNAGG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	21
EcoO109I	RGGNCCY	3 cut(s)	192, 262, 445
EcoRII	CCWGG	3 cut(s)	45, 266, 472
EcoT14I	CCWWGG	2 cut(s)	129, 351
EgeI	GGCGCC	2 cut(s)	289, 385
EheI	GGCGCC	2 cut(s)	289, 385
ErhI	CCWWGG	2 cut(s)	129, 351
Esp3I	CGTCTC	2 cut(s)	24, 146
FaeI	CATG	2 cut(s)	355, 397
FaiI	YATR	5 cut(s)	353, 395, 437, 461, 624
FatI	CATG	2 cut(s)	351, 393
FauI	CCCGC	2 cut(s)	182, 293
FokI	GGATG	3 cut(s)	85, 181, 337
GsuI	CTGGAG	1 cut(s)	611
HaeII	RGCGCY	3 cut(s)	291, 374, 387
HaeIII	GGCC	1 cut(s)	478
HapII	CCGG	6 cut(s)	35, 57, 166, 297, 387, 611
HgaI	GACGC	2 cut(s)	62, 128
Hin1I	GRCGYC	3 cut(s)	54, 288, 384
Hin1II	CATG	2 cut(s)	355, 397
HinfI	GANTC	4 cut(s)	42, 114, 418, 586
HpaII	CCGG	6 cut(s)	35, 57, 166, 297, 387, 611
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	6 cut(s)	11, 23, 70, 166, 310, 590
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	2 cut(s)	56, 337
HpyAV	CCTTC	3 cut(s)	205, 235, 374
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 344, 370, 557, 573, 613
HpyF3I	CTNAG	3 cut(s)	281, 480, 552
HpySE526I	ACGT	1 cut(s)	17
Hsp92I	GRCGYC	3 cut(s)	54, 288, 384
Hsp92II	CATG	2 cut(s)	355, 397
KasI	GGCGCC	2 cut(s)	287, 383
Kpn2I	TCCGGA	1 cut(s)	165
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	276, 375, 390
LmnI	GCTCC	2 cut(s)	25, 500
Lsp1109I	GCAGC	2 cut(s)	439, 579
LweI	GCATC	2 cut(s)	303, 592
MaeII	ACGT	1 cut(s)	17
MalI	GATC	3 cut(s)	278, 377, 392
MboI	GATC	3 cut(s)	276, 375, 390
MboII	GAAGA	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	35
Mly113I	GGCGCC	2 cut(s)	288, 384
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	2 cut(s)	64, 390
MreI	CGCCGGCG	1 cut(s)	56
MroI	TCCGGA	1 cut(s)	165
MroNI	GCCGGC	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	2 cut(s)	285, 570
MspI	CCGG	6 cut(s)	35, 57, 166, 297, 387, 611
MspR9I	CCNGG	5 cut(s)	35, 47, 268, 388, 474
MteI	GCGCNGCGC	1 cut(s)	179
MvaI	CCWGG	3 cut(s)	47, 268, 474
MwoI	GCNNNNNNNGC	6 cut(s)	62, 344, 370, 557, 573, 613
NaeI	GCCGGC	1 cut(s)	58
NarI	GGCGCC	2 cut(s)	288, 384
NciI	CCSGG	2 cut(s)	35, 388
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	3 cut(s)	276, 375, 390
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	2 cut(s)	355, 397
NlaIV	GGNNCC	8 cut(s)	27, 193, 264, 289, 305, 385, 447, 615
NruI	TCGCGA	1 cut(s)	311
OliI	CACNNNNGTG	1 cut(s)	239
PauI	GCGCGC	2 cut(s)	135, 153
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 180, 512
PdiI	GCCGGC	1 cut(s)	58
PfeI	GAWTC	3 cut(s)	42, 418, 586
PfoI	TCCNGGA	1 cut(s)	45
PleI	GAGTC	1 cut(s)	108
PluTI	GGCGCC	2 cut(s)	291, 387
PpsI	GAGTC	1 cut(s)	108
PpuMI	RGGWCCY	3 cut(s)	192, 262, 445
Psp5II	RGGWCCY	3 cut(s)	192, 262, 445
Psp6I	CCWGG	3 cut(s)	45, 266, 472
PspGI	CCWGG	3 cut(s)	45, 266, 472
PspN4I	GGNNCC	8 cut(s)	27, 193, 264, 289, 305, 385, 447, 615
PspPI	GGNCC	5 cut(s)	192, 262, 342, 445, 476
PspPPI	RGGWCCY	3 cut(s)	192, 262, 445
PteI	GCGCGC	2 cut(s)	135, 153
RruI	TCGCGA	1 cut(s)	311
RsaI	GTAC	2 cut(s)	98, 245
RsaNI	GTAC	2 cut(s)	97, 244
RseI	CAYNNNNRTG	1 cut(s)	239
Sau3AI	GATC	3 cut(s)	276, 375, 390
Sau96I	GGNCC	5 cut(s)	192, 262, 342, 445, 476
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	5 cut(s)	35, 47, 268, 388, 474
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	6 cut(s)	20, 227, 249, 344, 469, 497
SfaNI	GCATC	2 cut(s)	303, 592
SfoI	GGCGCC	2 cut(s)	289, 385
SgrAI	CRCCGGYG	2 cut(s)	56, 296
SinI	GGWCC	4 cut(s)	192, 262, 342, 445
SmiMI	CAYNNNNRTG	1 cut(s)	239
SspDI	GGCGCC	2 cut(s)	287, 383
StyD4I	CCNGG	5 cut(s)	33, 45, 266, 386, 472
StyI	CCWWGG	2 cut(s)	129, 351
TaaI	ACNGT	1 cut(s)	406
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	4 cut(s)	228, 275, 378, 600
TfiI	GAWTC	3 cut(s)	42, 418, 586
TseI	GCWGC	2 cut(s)	452, 567
TspDTI	ATGAA	1 cut(s)	185
VpaK11BI	GGWCC	4 cut(s)	192, 262, 342, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.