Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Forward (+)

5060882 .. 5063532

Gene Structure 2651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG066600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGGCGGCTTATTTTCCACCTTCGACTGCACGTTGGAGCACATGCGGCAAAAAGAGGACCACTGGAACCGGATCATCGCCGGCGCTGCCGCCAGATGCGGCTGGGGTTCGGCGCGACGGCGAGGTCCACCGCCGTGGGAGGGGTACTGTTGGCCCTACCCGAAGGCGTGGAGATCATGATGGACAAGTTCTTGGAGCAGTATCACCATCAGCATTGGTACGTGACTGAGGAACCTGGTGCTAGTATGCCCGGTCTACCTGGGCCGGAGGCGGTTGGATCAGAAGGAAGCCCTGGGCCGGAGGTGGTTAGGTCAGAAGGAAGCGCTAAGCAGGAGGCGGTTGGATCAGAAGGAAGCGCTAGGCCGGAGGTGGTTGGGTCAGAAGGAAGCTCCTCCGGTGGTTCGTGGTTTGGGAAAGGCAAAGAGTCTGAGGCGGCCAGCAGCGGAAGCGAGACGAAGGTTCTGGAGAGTTTTGATGCGCCTCCGGTGCAGGGTTTTGAGATCAAAGTGACGTGGAGGGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

175

Amino Acids

18.6

Weight (kDa)

5.99

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	124
AccI	GTMKAC	1 cut(s)	256
AccII	CGCG	1 cut(s)	116
AciI	CCGC	9 cut(s)	7, 47, 91, 100, 132, 272, 338, 434, 444
AclWI	GGATC	3 cut(s)	81, 286, 352
AcoI	YGGCCR	1 cut(s)	435
AfaI	GTAC	2 cut(s)	147, 221
AfeI	AGCGCT	2 cut(s)	325, 358
AfiI	CCNNNNNNNGG	3 cut(s)	141, 298, 491
AjiI	CACGTC	1 cut(s)	513
AjnI	CCWGG	3 cut(s)	235, 259, 292
AleI	CACNNNNGTG	1 cut(s)	134
AluBI	AGCT	1 cut(s)	390
AluI	AGCT	1 cut(s)	390
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	3 cut(s)	81, 286, 352
Aor51HI	AGCGCT	2 cut(s)	325, 358
AoxI	GGCC	5 cut(s)	153, 263, 296, 362, 435
ApeKI	GCWGC	2 cut(s)	87, 441
AspLEI	GCGC	5 cut(s)	87, 116, 326, 359, 481
AspS9I	GGNCC	5 cut(s)	59, 126, 154, 263, 296
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	1 cut(s)	197
AvaII	GGWCC	2 cut(s)	59, 126
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	74, 453
BccI	CCATC	2 cut(s)	175, 216
BceAI	ACGGC	2 cut(s)	119, 135
BciT130I	CCWGG	3 cut(s)	237, 261, 294
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	2 cut(s)	243, 360
BfoI	RGCGCY	3 cut(s)	88, 327, 360
BisI	GCNGC	7 cut(s)	8, 48, 88, 91, 101, 435, 442
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	7 cut(s)	9, 49, 89, 92, 102, 436, 443
Bme1390I	CCNGG	4 cut(s)	237, 252, 261, 294
Bme18I	GGWCC	2 cut(s)	59, 126
BmgBI	CACGTC	1 cut(s)	513
BmgT120I	GGNCC	5 cut(s)	59, 126, 154, 263, 296
BmiI	GGNNCC	2 cut(s)	69, 234
BmrFI	CCNGG	4 cut(s)	237, 252, 261, 294
BmsI	GCATC	2 cut(s)	87, 466
BpmI	CTGGAG	1 cut(s)	485
Bpu1102I	GCTNAGC	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	223
BsaJI	CCNNGG	4 cut(s)	135, 260, 292, 293
BsaWI	WCCGGW	3 cut(s)	70, 395, 484
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 298, 491
Bse118I	RCCGGY	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	3 cut(s)	237, 261, 294
BseDI	CCNNGG	4 cut(s)	135, 260, 292, 293
BseLI	CCNNNNNNNGG	3 cut(s)	141, 298, 491
BseMII	CTCAG	2 cut(s)	219, 420
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	74, 453
BseYI	CCCAGC	1 cut(s)	103
BsgI	GTGCAG	2 cut(s)	14, 509
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	5 cut(s)	155, 265, 298, 364, 437
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	8 cut(s)	71, 82, 252, 266, 299, 365, 396, 485
BslI	CCNNNNNNNGG	3 cut(s)	141, 298, 491
BsmAI	GTCTC	1 cut(s)	446
BsmBI	CGTCTC	1 cut(s)	446
BsnI	GGCC	5 cut(s)	155, 265, 298, 364, 437
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	5 cut(s)	73, 174, 278, 344, 501
Bsp1720I	GCTNAGC	1 cut(s)	327
BspACI	CCGC	9 cut(s)	7, 47, 91, 100, 132, 272, 338, 434, 444
BspANI	GGCC	5 cut(s)	155, 265, 298, 364, 437
BspCNI	CTCAG	2 cut(s)	220, 421
BspFNI	CGCG	1 cut(s)	116
BspHI	TCATGA	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	69, 234
BspPI	GGATC	3 cut(s)	81, 286, 352
BsrFI	RCCGGY	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	81
BssECI	CCNNGG	4 cut(s)	135, 260, 292, 293
BssMI	GATC	5 cut(s)	73, 174, 278, 344, 501
Bst2UI	CCWGG	3 cut(s)	237, 261, 294
Bst4CI	ACNGT	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	223
BstC8I	GCNNGC	2 cut(s)	83, 439
BstDEI	CTNAG	3 cut(s)	228, 327, 429
BstDSI	CCRYGG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	116
BstH2I	RGCGCY	3 cut(s)	88, 327, 360
BstHHI	GCGC	5 cut(s)	87, 116, 326, 359, 481
BstKTI	GATC	5 cut(s)	76, 177, 281, 347, 504
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	5 cut(s)	73, 174, 278, 344, 501
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 87, 447, 487
BstNI	CCWGG	3 cut(s)	237, 261, 294
BstNSI	RCATGY	1 cut(s)	47
BstSCI	CCNGG	4 cut(s)	235, 250, 259, 292
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	2 cut(s)	74, 453
BstXI	CCANNNNNNTGG	1 cut(s)	136
BsuRI	GGCC	5 cut(s)	155, 265, 298, 364, 437
BtgI	CCRYGG	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	62
BtrI	CACGTC	1 cut(s)	513
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	2 cut(s)	83, 439
CciI	TCATGA	1 cut(s)	177
CfoI	GCGC	5 cut(s)	87, 116, 326, 359, 481
Cfr10I	RCCGGY	1 cut(s)	81
Cfr13I	GGNCC	5 cut(s)	59, 126, 154, 263, 296
CsiI	ACCWGGT	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	146, 220
CviAII	CATG	2 cut(s)	44, 178
CviQI	GTAC	2 cut(s)	146, 220
DdeI	CTNAG	3 cut(s)	228, 327, 429
DpnI	GATC	5 cut(s)	75, 176, 280, 346, 503
DpnII	GATC	5 cut(s)	73, 174, 278, 344, 501
DrdI	GACNNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	435
Eco47I	GGWCC	2 cut(s)	59, 126
Eco47III	AGCGCT	2 cut(s)	325, 358
EcoRII	CCWGG	3 cut(s)	235, 259, 292
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	2 cut(s)	47, 181
FaiI	YATR	3 cut(s)	45, 179, 248
FatI	CATG	2 cut(s)	43, 177
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	7 cut(s)	8, 48, 88, 91, 101, 435, 442
Fsp4HI	GCNGC	7 cut(s)	8, 48, 88, 91, 101, 435, 442
FspBI	CTAG	2 cut(s)	243, 360
GlaI	GCGC	5 cut(s)	86, 115, 325, 358, 480
GluI	GCNGC	7 cut(s)	8, 48, 88, 91, 101, 435, 442
GsaI	CCCAGC	1 cut(s)	107
GsuI	CTGGAG	1 cut(s)	485
HaeII	RGCGCY	3 cut(s)	88, 327, 360
HaeIII	GGCC	5 cut(s)	155, 265, 298, 364, 437
HapII	CCGG	8 cut(s)	71, 82, 252, 266, 299, 365, 396, 485
HhaI	GCGC	5 cut(s)	87, 116, 326, 359, 481
Hin1II	CATG	2 cut(s)	47, 181
Hin6I	GCGC	5 cut(s)	85, 114, 324, 357, 479
HinP1I	GCGC	5 cut(s)	85, 114, 324, 357, 479
HinfI	GANTC	1 cut(s)	425
HpaII	CCGG	8 cut(s)	71, 82, 252, 266, 299, 365, 396, 485
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	129, 257
Hpy188I	TCNGA	5 cut(s)	283, 316, 349, 382, 430
Hpy188III	TCNNGA	2 cut(s)	178, 464
Hpy8I	GTNNAC	2 cut(s)	129, 257
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	7 cut(s)	32, 158, 278, 311, 344, 377, 451
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4IV	ACGT	3 cut(s)	33, 222, 512
HpyCH4V	TGCA	2 cut(s)	31, 490
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 87, 447, 487
HpyF3I	CTNAG	3 cut(s)	228, 327, 429
HpySE526I	ACGT	3 cut(s)	33, 222, 512
Hsp92II	CATG	2 cut(s)	47, 181
HspAI	GCGC	5 cut(s)	85, 114, 324, 357, 479
KroI	GCCGGC	1 cut(s)	81
KroNI	GCCGGC	1 cut(s)	83
Kzo9I	GATC	5 cut(s)	73, 174, 278, 344, 501
LmnI	GCTCC	3 cut(s)	38, 196, 395
Lsp1109I	GCAGC	2 cut(s)	74, 453
LweI	GCATC	2 cut(s)	87, 466
MabI	ACCWGGT	1 cut(s)	235
MaeI	CTAG	2 cut(s)	243, 360
MaeII	ACGT	3 cut(s)	33, 222, 512
MaeIII	GTNAC	2 cut(s)	223, 508
MalI	GATC	5 cut(s)	75, 176, 280, 346, 503
MboI	GATC	5 cut(s)	73, 174, 278, 344, 501
MhlI	GDGCHC	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	434
MmeI	TCCRAC	3 cut(s)	16, 256, 322
MreI	CGCCGGCG	1 cut(s)	81
MroNI	GCCGGC	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	444
MspI	CCGG	8 cut(s)	71, 82, 252, 266, 299, 365, 396, 485
MspR9I	CCNGG	4 cut(s)	237, 252, 261, 294
MvaI	CCWGG	3 cut(s)	237, 261, 294
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	4 cut(s)	47, 87, 447, 487
NaeI	GCCGGC	1 cut(s)	83
NciI	CCSGG	1 cut(s)	252
NdeII	GATC	5 cut(s)	73, 174, 278, 344, 501
NgoMIV	GCCGGC	1 cut(s)	81
NlaIII	CATG	2 cut(s)	47, 181
NlaIV	GGNNCC	2 cut(s)	69, 234
NmuCI	GTSAC	2 cut(s)	223, 508
NspI	RCATGY	1 cut(s)	47
OliI	CACNNNNGTG	1 cut(s)	134
PagI	TCATGA	1 cut(s)	177
PasI	CCCWGGG	1 cut(s)	293
PdiI	GCCGGC	1 cut(s)	83
PkrI	GCNGC	7 cut(s)	9, 49, 89, 92, 102, 436, 443
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
Ppu21I	YACGTR	1 cut(s)	223
Psp6I	CCWGG	3 cut(s)	235, 259, 292
PspFI	CCCAGC	1 cut(s)	103
PspGI	CCWGG	3 cut(s)	235, 259, 292
PspN4I	GGNNCC	2 cut(s)	69, 234
PspPI	GGNCC	5 cut(s)	59, 126, 154, 263, 296
RsaI	GTAC	2 cut(s)	147, 221
RsaNI	GTAC	2 cut(s)	146, 220
RseI	CAYNNNNRTG	1 cut(s)	134
SatI	GCNGC	7 cut(s)	8, 48, 88, 91, 101, 435, 442
Sau3AI	GATC	5 cut(s)	73, 174, 278, 344, 501
Sau96I	GGNCC	5 cut(s)	59, 126, 154, 263, 296
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	4 cut(s)	237, 252, 261, 294
SduI	GDGCHC	1 cut(s)	43
SexAI	ACCWGGT	1 cut(s)	235
SfaNI	GCATC	2 cut(s)	87, 466
SgrAI	CRCCGGYG	1 cut(s)	81
SinI	GGWCC	2 cut(s)	59, 126
SmiMI	CAYNNNNRTG	1 cut(s)	134
SsiI	CCGC	9 cut(s)	7, 47, 91, 100, 132, 272, 338, 434, 444
SspMI	CTAG	2 cut(s)	243, 360
StyD4I	CCNGG	4 cut(s)	235, 250, 259, 292
TaaI	ACNGT	1 cut(s)	150
TaiI	ACGT	3 cut(s)	36, 225, 515
TaqI	TCGA	1 cut(s)	25
TauI	GCSGC	5 cut(s)	10, 50, 93, 103, 437
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	2 cut(s)	223, 508
TseI	GCWGC	2 cut(s)	87, 441
Tsp45I	GTSAC	2 cut(s)	223, 508
TspRI	CASTG	1 cut(s)	69
VpaK11BI	GGWCC	2 cut(s)	59, 126
XceI	RCATGY	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	256
XspI	CTAG	2 cut(s)	243, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.