Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Reverse (-)

87137010 .. 87138949

Gene Structure 1940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00149600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGGCGGCTTATTTTCCACCTTCGACTGCACGTTGGAGCACATGCGGCAAAAAGAGGACCACTGGAACCGGATCATCGCAGGCGCTGGCGCCGGCGGCTTCAGCCAGATGCGGCAGGGGTTCGGCGCGACGGGGAGGTCCGCCGCCGTGGGAGGGGTGCTGTTGGCCTACTCGAAGGCTACGATATCATGATGGACAAGTTCGTGGAGCAGTATCAGCATCAGCATTGGTACGTGACTGAGGAACCTGGTGCTAGTATGCCCGGTCTACCTGGGCCGGAGGCGGTTGGATCAGAAGGAAGCCCTGGGCCGGAGGCGGTTAGGTCAGAAGGAAGCGCTAGGCCGGAGGCGGTTGGGTCAGAAGGAAGCTCCTCCGGTGGTTCGTGGTTTGGGAAAGGCAAAGAGTCTGAGGCGGCCAGCAGCGGAAGCGAGAAGAAGGTTCTGGAGAGTTTTGATGCGCCTCCGGTGCAGGGTTTTGAGATCAAAGTGACGTGGAGGGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

168

Amino Acids

18.34

Weight (kDa)

8.09

Isoelectric Point (pI)

67.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	268
AccII	CGCG	1 cut(s)	129
AclWI	GGATC	2 cut(s)	81, 298
AcoI	YGGCCR	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	91
AfaI	GTAC	1 cut(s)	233
AfeI	AGCGCT	1 cut(s)	337
AfiI	CCNNNNNNNGG	3 cut(s)	154, 310, 470
AjiI	CACGTC	1 cut(s)	492
AjnI	CCWGG	3 cut(s)	247, 271, 304
AluBI	AGCT	1 cut(s)	369
AluI	AGCT	1 cut(s)	369
Alw21I	GWGCWC	1 cut(s)	43
AlwI	GGATC	2 cut(s)	81, 298
AlwNI	CAGNNNCTG	1 cut(s)	87
Aor51HI	AGCGCT	1 cut(s)	337
AoxI	GGCC	5 cut(s)	166, 275, 308, 341, 414
ApeKI	GCWGC	1 cut(s)	420
AspLEI	GCGC	5 cut(s)	87, 93, 129, 338, 460
AspS9I	GGNCC	4 cut(s)	59, 139, 275, 308
AsuC2I	CCSGG	1 cut(s)	264
AvaII	GGWCC	2 cut(s)	59, 139
BanI	GGYRCC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	3 cut(s)	249, 273, 306
BcnI	CCSGG	1 cut(s)	264
BfaI	CTAG	2 cut(s)	255, 339
BfoI	RGCGCY	3 cut(s)	88, 94, 339
BisI	GCNGC	7 cut(s)	8, 48, 98, 114, 145, 414, 421
BlsI	GCNGC	7 cut(s)	9, 49, 99, 115, 146, 415, 422
Bme1390I	CCNGG	4 cut(s)	249, 264, 273, 306
Bme18I	GGWCC	2 cut(s)	59, 139
BmgBI	CACGTC	1 cut(s)	492
BmgT120I	GGNCC	4 cut(s)	59, 139, 275, 308
BmiI	GGNNCC	3 cut(s)	69, 92, 246
BmrFI	CCNGG	4 cut(s)	249, 264, 273, 306
BmsI	GCATC	3 cut(s)	100, 229, 445
BpmI	CTGGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	91
BsaJI	CCNNGG	4 cut(s)	148, 272, 304, 305
BsaWI	WCCGGW	3 cut(s)	70, 374, 463
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 310, 470
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	3 cut(s)	249, 273, 306
BseDI	CCNNGG	4 cut(s)	148, 272, 304, 305
BseLI	CCNNNNNNNGG	3 cut(s)	154, 310, 470
BseMII	CTCAG	2 cut(s)	231, 399
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	361
BseXI	GCAGC	1 cut(s)	432
BsgI	GTGCAG	2 cut(s)	14, 488
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	5 cut(s)	168, 277, 310, 343, 416
BshNI	GGYRCC	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	8 cut(s)	71, 94, 264, 278, 311, 344, 375, 464
BslI	CCNNNNNNNGG	3 cut(s)	154, 310, 470
BsnI	GGCC	5 cut(s)	168, 277, 310, 343, 416
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	73, 290, 480
BspANI	GGCC	5 cut(s)	168, 277, 310, 343, 416
BspCNI	CTCAG	2 cut(s)	232, 400
BspFNI	CGCG	1 cut(s)	129
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	3 cut(s)	69, 92, 246
BspPI	GGATC	2 cut(s)	81, 298
BspT107I	GGYRCC	1 cut(s)	90
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	4 cut(s)	148, 272, 304, 305
BssMI	GATC	3 cut(s)	73, 290, 480
BssNI	GRCGYC	1 cut(s)	91
Bst2UI	CCWGG	3 cut(s)	249, 273, 306
BstACI	GRCGYC	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	235
BstC8I	GCNNGC	4 cut(s)	83, 89, 95, 418
BstDEI	CTNAG	2 cut(s)	240, 408
BstDSI	CCRYGG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	129
BstH2I	RGCGCY	3 cut(s)	88, 94, 339
BstHHI	GCGC	5 cut(s)	87, 93, 129, 338, 460
BstKTI	GATC	3 cut(s)	76, 293, 483
BstMBI	GATC	3 cut(s)	73, 290, 480
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 97, 103, 217, 426, 466
BstNI	CCWGG	3 cut(s)	249, 273, 306
BstNSI	RCATGY	1 cut(s)	47
BstSCI	CCNGG	4 cut(s)	247, 262, 271, 304
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	432
BsuRI	GGCC	5 cut(s)	168, 277, 310, 343, 416
BtgI	CCRYGG	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	62
BtrI	CACGTC	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	4 cut(s)	83, 89, 95, 418
CaiI	CAGNNNCTG	1 cut(s)	87
CciI	TCATGA	1 cut(s)	189
CfoI	GCGC	5 cut(s)	87, 93, 129, 338, 460
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	4 cut(s)	59, 139, 275, 308
CsiI	ACCWGGT	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	2 cut(s)	44, 190
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	2 cut(s)	240, 408
DinI	GGCGCC	1 cut(s)	92
DpnI	GATC	3 cut(s)	75, 292, 482
DpnII	GATC	3 cut(s)	73, 290, 480
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	414
EciI	GGCGGA	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	59, 139
Eco47III	AGCGCT	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	86
EcoRII	CCWGG	3 cut(s)	247, 271, 304
EcoRV	GATATC	1 cut(s)	187
EgeI	GGCGCC	1 cut(s)	92
EheI	GGCGCC	1 cut(s)	92
FaeI	CATG	2 cut(s)	47, 193
FaiI	YATR	3 cut(s)	45, 191, 260
FatI	CATG	2 cut(s)	43, 189
FblI	GTMKAC	1 cut(s)	268
Fnu4HI	GCNGC	7 cut(s)	8, 48, 98, 114, 145, 414, 421
Fsp4HI	GCNGC	7 cut(s)	8, 48, 98, 114, 145, 414, 421
FspBI	CTAG	2 cut(s)	255, 339
GlaI	GCGC	5 cut(s)	86, 92, 128, 337, 459
GluI	GCNGC	7 cut(s)	8, 48, 98, 114, 145, 414, 421
GsuI	CTGGAG	1 cut(s)	464
HaeII	RGCGCY	3 cut(s)	88, 94, 339
HaeIII	GGCC	5 cut(s)	168, 277, 310, 343, 416
HapII	CCGG	8 cut(s)	71, 94, 264, 278, 311, 344, 375, 464
HhaI	GCGC	5 cut(s)	87, 93, 129, 338, 460
Hin1I	GRCGYC	1 cut(s)	91
Hin1II	CATG	2 cut(s)	47, 193
Hin6I	GCGC	5 cut(s)	85, 91, 127, 336, 458
HinP1I	GCGC	5 cut(s)	85, 91, 127, 336, 458
HinfI	GANTC	1 cut(s)	404
HpaII	CCGG	8 cut(s)	71, 94, 264, 278, 311, 344, 375, 464
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	4 cut(s)	295, 328, 361, 409
Hpy188III	TCNNGA	2 cut(s)	190, 443
Hpy8I	GTNNAC	1 cut(s)	269
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	6 cut(s)	32, 170, 290, 323, 356, 430
HpyCH4IV	ACGT	3 cut(s)	33, 234, 491
HpyCH4V	TGCA	2 cut(s)	31, 469
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 97, 103, 217, 426, 466
HpyF3I	CTNAG	2 cut(s)	240, 408
HpySE526I	ACGT	3 cut(s)	33, 234, 491
Hsp92I	GRCGYC	1 cut(s)	91
Hsp92II	CATG	2 cut(s)	47, 193
HspAI	GCGC	5 cut(s)	85, 91, 127, 336, 458
KasI	GGCGCC	1 cut(s)	90
KroI	GCCGGC	1 cut(s)	93
KroNI	GCCGGC	1 cut(s)	95
Kzo9I	GATC	3 cut(s)	73, 290, 480
LmnI	GCTCC	3 cut(s)	38, 208, 374
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	3 cut(s)	100, 229, 445
MabI	ACCWGGT	1 cut(s)	247
MaeI	CTAG	2 cut(s)	255, 339
MaeII	ACGT	3 cut(s)	33, 234, 491
MaeIII	GTNAC	2 cut(s)	235, 487
MalI	GATC	3 cut(s)	75, 292, 482
MboI	GATC	3 cut(s)	73, 290, 480
MboII	GAAGA	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	43
Mly113I	GGCGCC	1 cut(s)	91
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	2 cut(s)	16, 268
MreI	CGCCGGCG	1 cut(s)	93
MroNI	GCCGGC	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	423
MspI	CCGG	8 cut(s)	71, 94, 264, 278, 311, 344, 375, 464
MspR9I	CCNGG	4 cut(s)	249, 264, 273, 306
MvaI	CCWGG	3 cut(s)	249, 273, 306
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	6 cut(s)	47, 97, 103, 217, 426, 466
NaeI	GCCGGC	1 cut(s)	95
NarI	GGCGCC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	3 cut(s)	73, 290, 480
NgoMIV	GCCGGC	1 cut(s)	93
NlaIII	CATG	2 cut(s)	47, 193
NlaIV	GGNNCC	3 cut(s)	69, 92, 246
NmuCI	GTSAC	2 cut(s)	235, 487
NspI	RCATGY	1 cut(s)	47
PagI	TCATGA	1 cut(s)	189
PasI	CCCWGGG	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PdiI	GCCGGC	1 cut(s)	95
PkrI	GCNGC	7 cut(s)	9, 49, 99, 115, 146, 415, 422
PleI	GAGTC	1 cut(s)	412
PluTI	GGCGCC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	412
Ppu21I	YACGTR	1 cut(s)	235
Psp6I	CCWGG	3 cut(s)	247, 271, 304
PspGI	CCWGG	3 cut(s)	247, 271, 304
PspN4I	GGNNCC	3 cut(s)	69, 92, 246
PspPI	GGNCC	4 cut(s)	59, 139, 275, 308
PstNI	CAGNNNCTG	1 cut(s)	87
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SatI	GCNGC	7 cut(s)	8, 48, 98, 114, 145, 414, 421
Sau3AI	GATC	3 cut(s)	73, 290, 480
Sau96I	GGNCC	4 cut(s)	59, 139, 275, 308
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	4 cut(s)	249, 264, 273, 306
SduI	GDGCHC	1 cut(s)	43
SexAI	ACCWGGT	1 cut(s)	247
SfaNI	GCATC	3 cut(s)	100, 229, 445
SfoI	GGCGCC	1 cut(s)	92
SgrAI	CRCCGGYG	1 cut(s)	93
SinI	GGWCC	2 cut(s)	59, 139
SspDI	GGCGCC	1 cut(s)	90
SspMI	CTAG	2 cut(s)	255, 339
StyD4I	CCNGG	4 cut(s)	247, 262, 271, 304
TaiI	ACGT	3 cut(s)	36, 237, 494
TaqI	TCGA	2 cut(s)	25, 174
TauI	GCSGC	6 cut(s)	10, 50, 100, 116, 147, 416
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	2 cut(s)	235, 487
TseI	GCWGC	1 cut(s)	420
Tsp45I	GTSAC	2 cut(s)	235, 487
TspRI	CASTG	1 cut(s)	69
VpaK11BI	GGWCC	2 cut(s)	59, 139
XceI	RCATGY	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	268
XspI	CTAG	2 cut(s)	255, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.