Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Reverse (-)

15697810 .. 15699354

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGAACACCAGAGACATCTCGGGAGCCTTGCCCTGATCGTATACTCGATGATATCGGTGGTGCTTTTGGTATGGGAGCTGTTGGAGGATCTGCCTTTCATTTCATTAAAGGGACTTACAATTCTCCTAAAGGTAGTCGCTTTGTTGGAGGAACACAATCGGTGAGCATGAACGCACCTCGTACTGGAGGCAGTTTTGCTGTTTGGGGAGGTTTATTCTCGACATTTGACTGTACCATGGTGTACCTAAGGCAAAAGGAGGATCCTTGGAACTCTATCATTGCTGGTGCTGCAACTGGAGGGTTTCTGTCTATGCGGCAAGGGGCTGGTGCTGCTTCGAGATCAGCTATTTTTGGAGGGGTTTTGCTTGCTTTGATTGAAGGAGCTGGGATCATGTTGAACAAGGTACTGGCTCAGCCTCAGAATATGATGATGGAGGACCCTGGAATGCAAGGAATGCCTGGGATGCAGGGAATGCAGGGAATGCCTGGGATGCCCGGAATGCAAGGAATGCCTGGGATGCAAGGAATGCAGATGGGGCAGATGCAGAGTCAAGCACAGATAAGGTCAGAGAGTCAAAACCAGAATACAGCTTCATCATCATCATCATCATCATGGTTTGGAGGGCTTTTTGATAAGAAAAAGGAGGAGGTGCAACCAGGCAGTGAAAGTAAAACAGAGGTGTTGGAGAGTTTTGATGCTCCTCCGGTGCCATCATTTGAGTTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

243

Amino Acids

25.57

Weight (kDa)

5.24

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	15 - 122	2.6e-30	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	709
AccI	GTMKAC	1 cut(s)	43
AciI	CCGC	1 cut(s)	316
AclWI	GGATC	4 cut(s)	97, 257, 270, 398
AfaI	GTAC	4 cut(s)	184, 235, 245, 408
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	3 cut(s)	380, 400, 727
AjnI	CCWGG	5 cut(s)	442, 460, 487, 514, 658
AluBI	AGCT	4 cut(s)	80, 347, 386, 593
AluI	AGCT	4 cut(s)	80, 347, 386, 593
Alw26I	GTCTC	1 cut(s)	8
AlwI	GGATC	4 cut(s)	97, 257, 270, 398
Ama87I	CYCGRG	1 cut(s)	21
ApeKI	GCWGC	2 cut(s)	290, 332
AspS9I	GGNCC	1 cut(s)	439
AsuC2I	CCSGG	1 cut(s)	498
AsuHPI	GGTGA	1 cut(s)	175
AvaI	CYCGRG	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	439
AxyI	CCTNAGG	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	709
BbvI	GCAGC	2 cut(s)	277, 319
BccI	CCATC	3 cut(s)	427, 529, 721
BciT130I	CCWGG	5 cut(s)	444, 462, 489, 516, 660
BcnI	CCSGG	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	8
BisI	GCNGC	3 cut(s)	291, 317, 333
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	3 cut(s)	292, 318, 334
Bme1390I	CCNGG	6 cut(s)	444, 462, 489, 498, 516, 660
Bme18I	GGWCC	1 cut(s)	439
BmeT110I	CYCGRG	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	4 cut(s)	27, 264, 441, 711
BmrFI	CCNGG	6 cut(s)	444, 462, 489, 498, 516, 660
BmsI	GCATC	5 cut(s)	456, 483, 510, 534, 688
BpmI	CTGGAG	2 cut(s)	207, 318
Bpu1102I	GCTNAGC	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	498
BsaJI	CCNNGG	6 cut(s)	237, 266, 442, 461, 488, 515
BsaWI	WCCGGW	1 cut(s)	706
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	3 cut(s)	190, 301, 414
Bse21I	CCTNAGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	5 cut(s)	444, 462, 489, 516, 660
BseDI	CCNNGG	6 cut(s)	237, 266, 442, 461, 488, 515
BseGI	GGATG	3 cut(s)	471, 498, 525
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	428, 434
BseNI	ACTGG	3 cut(s)	190, 301, 414
BseRI	GAGGAG	2 cut(s)	662, 693
BseXI	GCAGC	2 cut(s)	277, 319
BseYI	CCCAGC	1 cut(s)	386
BshNI	GGYRCC	1 cut(s)	709
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	498, 707
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	127
BsmI	GAATGC	7 cut(s)	453, 462, 480, 489, 507, 516, 534
BsoBI	CYCGRG	1 cut(s)	21
Bsp143I	GATC	5 cut(s)	37, 89, 262, 341, 390
Bsp1720I	GCTNAGC	1 cut(s)	414
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	1 cut(s)	316
BspCNI	CTCAG	2 cut(s)	427, 433
BspLI	GGNNCC	4 cut(s)	27, 264, 441, 711
BspPI	GGATC	4 cut(s)	97, 257, 270, 398
BspT107I	GGYRCC	1 cut(s)	709
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	3 cut(s)	190, 301, 414
BssECI	CCNNGG	6 cut(s)	237, 266, 442, 461, 488, 515
BssMI	GATC	5 cut(s)	37, 89, 262, 341, 390
BssNAI	GTATAC	1 cut(s)	44
BssT1I	CCWWGG	2 cut(s)	237, 266
Bst1107I	GTATAC	1 cut(s)	44
Bst2UI	CCWGG	5 cut(s)	444, 462, 489, 516, 660
Bst4CI	ACNGT	1 cut(s)	233
BstAPI	GCANNNNNTGC	5 cut(s)	457, 475, 484, 511, 529
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	3 cut(s)	248, 414, 420
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	3 cut(s)	471, 498, 525
BstKTI	GATC	5 cut(s)	40, 92, 265, 344, 393
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	5 cut(s)	37, 89, 262, 341, 390
BstNI	CCWGG	5 cut(s)	444, 462, 489, 516, 660
BstSCI	CCNGG	6 cut(s)	442, 460, 487, 496, 514, 658
BstV1I	GCAGC	2 cut(s)	277, 319
BstX2I	RGATCY	2 cut(s)	89, 262
BstYI	RGATCY	2 cut(s)	89, 262
BstZ17I	GTATAC	1 cut(s)	44
Bsu36I	CCTNAGG	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	3 cut(s)	471, 498, 525
BtsI	GCAGTG	1 cut(s)	670
BtsIMutI	CAGTG	1 cut(s)	670
Cac8I	GCNNGC	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	439
Csp6I	GTAC	4 cut(s)	183, 234, 244, 407
CviAII	CATG	4 cut(s)	169, 238, 394, 615
CviJI	RGCY	9 cut(s)	28, 80, 326, 347, 386, 413, 418, 593, 628
CviKI_1	RGCY	9 cut(s)	28, 80, 326, 347, 386, 413, 418, 593, 628
CviQI	GTAC	4 cut(s)	183, 234, 244, 407
DdeI	CTNAG	3 cut(s)	248, 414, 420
DpnI	GATC	5 cut(s)	39, 91, 264, 343, 392
DpnII	GATC	5 cut(s)	37, 89, 262, 341, 390
Eco130I	CCWWGG	2 cut(s)	237, 266
Eco32I	GATATC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	439
Eco81I	CCTNAGG	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRII	CCWGG	5 cut(s)	442, 460, 487, 514, 658
EcoRV	GATATC	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	237, 266
ErhI	CCWWGG	2 cut(s)	237, 266
FaeI	CATG	4 cut(s)	172, 241, 397, 618
FaiI	YATR	8 cut(s)	44, 74, 170, 239, 314, 395, 428, 616
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	4 cut(s)	168, 237, 393, 614
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	3 cut(s)	291, 317, 333
FokI	GGATG	3 cut(s)	478, 505, 532
Fsp4HI	GCNGC	3 cut(s)	291, 317, 333
GluI	GCNGC	3 cut(s)	291, 317, 333
GsaI	CCCAGC	1 cut(s)	390
GsuI	CTGGAG	2 cut(s)	207, 318
HapII	CCGG	2 cut(s)	498, 707
Hin1II	CATG	4 cut(s)	172, 241, 397, 618
HinfI	GANTC	2 cut(s)	550, 574
HpaII	CCGG	2 cut(s)	498, 707
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	2 cut(s)	44, 244
Hpy188I	TCNGA	2 cut(s)	423, 571
Hpy188III	TCNNGA	3 cut(s)	23, 220, 339
Hpy8I	GTNNAC	2 cut(s)	44, 244
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	9 cut(s)	293, 451, 469, 478, 505, 523, 532, 547, 655
HpyF3I	CTNAG	3 cut(s)	248, 414, 420
Hsp92II	CATG	4 cut(s)	172, 241, 397, 618
Kzo9I	GATC	5 cut(s)	37, 89, 262, 341, 390
LmnI	GCTCC	4 cut(s)	25, 77, 383, 706
Lsp1109I	GCAGC	2 cut(s)	277, 319
LweI	GCATC	5 cut(s)	456, 483, 510, 534, 688
MalI	GATC	5 cut(s)	39, 91, 264, 343, 392
MboI	GATC	5 cut(s)	37, 89, 262, 341, 390
MflI	RGATCY	2 cut(s)	89, 262
MluCI	AATT	1 cut(s)	121
MlyI	GAGTC	2 cut(s)	559, 583
MmeI	TCCRAC	3 cut(s)	64, 127, 666
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	613
MspI	CCGG	2 cut(s)	498, 707
MspR9I	CCNGG	6 cut(s)	444, 462, 489, 498, 516, 660
Mva1269I	GAATGC	7 cut(s)	453, 462, 480, 489, 507, 516, 534
MvaI	CCWGG	5 cut(s)	444, 462, 489, 516, 660
NciI	CCSGG	1 cut(s)	498
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	5 cut(s)	37, 89, 262, 341, 390
NlaIII	CATG	4 cut(s)	172, 241, 397, 618
NlaIV	GGNNCC	4 cut(s)	27, 264, 441, 711
PctI	GAATGC	7 cut(s)	453, 462, 480, 489, 507, 516, 534
PkrI	GCNGC	3 cut(s)	292, 318, 334
PleI	GAGTC	2 cut(s)	558, 582
PpsI	GAGTC	2 cut(s)	558, 582
PpuMI	RGGWCCY	1 cut(s)	439
Psp5II	RGGWCCY	1 cut(s)	439
Psp6I	CCWGG	5 cut(s)	442, 460, 487, 514, 658
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	5 cut(s)	442, 460, 487, 514, 658
PspN4I	GGNNCC	4 cut(s)	27, 264, 441, 711
PspPI	GGNCC	1 cut(s)	439
PspPPI	RGGWCCY	1 cut(s)	439
PsuI	RGATCY	2 cut(s)	89, 262
RsaI	GTAC	4 cut(s)	184, 235, 245, 408
RsaNI	GTAC	4 cut(s)	183, 234, 244, 407
RseI	CAYNNNNRTG	1 cut(s)	613
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	3 cut(s)	291, 317, 333
Sau3AI	GATC	5 cut(s)	37, 89, 262, 341, 390
Sau96I	GGNCC	1 cut(s)	439
SchI	GAGTC	2 cut(s)	559, 583
ScrFI	CCNGG	6 cut(s)	444, 462, 489, 498, 516, 660
SfaNI	GCATC	5 cut(s)	456, 483, 510, 534, 688
SinI	GGWCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	613
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	1 cut(s)	316
StyD4I	CCNGG	6 cut(s)	442, 460, 487, 496, 514, 658
StyI	CCWWGG	2 cut(s)	237, 266
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	3 cut(s)	48, 221, 338
TasI	AATT	1 cut(s)	121
TauI	GCSGC	1 cut(s)	319
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	670
TseI	GCWGC	2 cut(s)	290, 332
TspDTI	ATGAA	4 cut(s)	89, 94, 185, 585
TspRI	CASTG	1 cut(s)	670
VpaK11BI	GGWCC	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.