Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Reverse (-)

19109416 .. 19110036

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g25200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGGAACTCCAGAAACGTCACGGGAGCCGTGCCCGGACCGAATCCTCGACGACGTCGGCGGGGCCTTCGGGATGGGCGCCGTCGGAGGAGGCGCCTTCCATTTCATCAAGGGGATCTACAACTCCCCCAAGGGCGCGCGTCTCGTCGGCGCCGCCCAAGCCGTCCGCATGAACTCTCCCCGCGTCGGTGGCAGCTTCGCCGTCTGGGGCGGCCTCTTCTCCACCTTCGACTGCACCATGGTCTACCTGCGCCAGAAGGAGGACCCCTGGAACTCGATCATCGCCGGCGCCGCCACCGGAGGCTTCCTCTCCATGCGGCAGGGGATGGGCGCCACGGCGAGGTCCGCCGCCATGGGAGGGGTGCTGCTGGCCCTGATCGAAGGCGCCGGGATCATGCTCAACAAGATGATGGAGAAGCAGCAGCAGATTCCGATGGAGGAACCTGGTCTGCCTGGGATGATGGGCGGCCCGGAGGAGCCCGTCGGGTCAGAAGGACCCGGTTCCTGGCTGGGAGGGTTGTTTGGGAAAGGGAAAGAGCCTGAGCCGGCCACCAGCGGAAGCGAGACCAAGGTTCTAGAGAGCTTCGATGCTCCTCCGGTGCCCAATTTTGATTACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

207

Amino Acids

21.41

Weight (kDa)

5.11

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	15 - 122	1.1e-31	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	57
Acc36I	ACCTGC	1 cut(s)	255
AccB1I	GGYRCC	7 cut(s)	77, 92, 149, 287, 329, 383, 598
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	3 cut(s)	137, 139, 183
AclWI	GGATC	2 cut(s)	122, 398
AcoI	YGGCCR	1 cut(s)	546
AcyI	GRCGYC	7 cut(s)	54, 78, 93, 150, 288, 330, 384
AfiI	CCNNNNNNNGG	5 cut(s)	185, 259, 339, 357, 504
AjnI	CCWGG	4 cut(s)	266, 442, 451, 503
AluBI	AGCT	2 cut(s)	195, 582
AluI	AGCT	2 cut(s)	195, 582
Alw26I	GTCTC	2 cut(s)	146, 557
AlwI	GGATC	2 cut(s)	122, 398
AoxI	GGCC	5 cut(s)	63, 211, 369, 466, 546
ApeKI	GCWGC	4 cut(s)	192, 364, 418, 421
AspLEI	GCGC	9 cut(s)	80, 95, 137, 139, 152, 252, 290, 332, 386
AspS9I	GGNCC	7 cut(s)	37, 63, 262, 342, 370, 467, 494
AsuC2I	CCSGG	4 cut(s)	35, 388, 470, 498
AvaII	GGWCC	4 cut(s)	37, 262, 342, 494
BaeGI	GKGCMC	2 cut(s)	35, 603
BanI	GGYRCC	7 cut(s)	77, 92, 149, 287, 329, 383, 598
BanII	GRGCYC	1 cut(s)	480
BbvI	GCAGC	4 cut(s)	204, 351, 430, 433
BccI	CCATC	5 cut(s)	67, 319, 403, 427, 454
BceAI	ACGGC	5 cut(s)	13, 65, 146, 185, 351
BciT130I	CCWGG	4 cut(s)	268, 444, 453, 505
BcnI	CCSGG	4 cut(s)	35, 388, 470, 498
BcoDI	GTCTC	2 cut(s)	146, 557
BfaI	CTAG	1 cut(s)	575
BfoI	RGCGCY	6 cut(s)	81, 96, 153, 291, 333, 387
BfuAI	ACCTGC	1 cut(s)	255
Bme1390I	CCNGG	8 cut(s)	35, 268, 388, 444, 453, 470, 498, 505
Bme18I	GGWCC	4 cut(s)	37, 262, 342, 494
BmgT120I	GGNCC	7 cut(s)	37, 63, 262, 342, 370, 467, 494
BmrFI	CCNGG	8 cut(s)	35, 268, 388, 444, 453, 470, 498, 505
BmsI	GCATC	1 cut(s)	577
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
Bpu10I	CCTNAGC	1 cut(s)	540
BpuMI	CCSGG	4 cut(s)	35, 388, 470, 498
BsaHI	GRCGYC	7 cut(s)	54, 78, 93, 150, 288, 330, 384
BsaI	GGTCTC	1 cut(s)	557
BsaJI	CCNNGG	7 cut(s)	129, 237, 266, 333, 351, 452, 567
BsaWI	WCCGGW	2 cut(s)	296, 595
Bsc4I	CCNNNNNNNGG	5 cut(s)	185, 259, 339, 357, 504
Bse118I	RCCGGY	2 cut(s)	284, 544
BseBI	CCWGG	4 cut(s)	268, 444, 453, 505
BseDI	CCNNGG	7 cut(s)	129, 237, 266, 333, 351, 452, 567
BseGI	GGATG	3 cut(s)	78, 330, 462
BseLI	CCNNNNNNNGG	5 cut(s)	185, 259, 339, 357, 504
BseMII	CTCAG	1 cut(s)	531
BsePI	GCGCGC	1 cut(s)	135
BseRI	GAGGAG	3 cut(s)	102, 488, 582
BseSI	GKGCMC	2 cut(s)	35, 603
BseXI	GCAGC	4 cut(s)	204, 351, 430, 433
BseYI	CCCAGC	1 cut(s)	508
BsgI	GTGCAG	1 cut(s)	217
Bsh1236I	CGCG	3 cut(s)	137, 139, 183
BshFI	GGCC	5 cut(s)	65, 213, 371, 468, 548
BshNI	GGYRCC	7 cut(s)	77, 92, 149, 287, 329, 383, 598
BsiSI	CCGG	8 cut(s)	35, 285, 297, 387, 470, 498, 545, 596
BslI	CCNNNNNNNGG	5 cut(s)	185, 259, 339, 357, 504
BsmAI	GTCTC	2 cut(s)	146, 557
BsmBI	CGTCTC	1 cut(s)	146
BsnI	GGCC	5 cut(s)	65, 213, 371, 468, 548
Bso31I	GGTCTC	1 cut(s)	557
Bsp1286I	GDGCHC	3 cut(s)	35, 480, 603
Bsp143I	GATC	4 cut(s)	114, 276, 375, 390
Bsp19I	CCATGG	2 cut(s)	237, 351
BspANI	GGCC	5 cut(s)	65, 213, 371, 468, 548
BspCNI	CTCAG	1 cut(s)	532
BspFNI	CGCG	3 cut(s)	137, 139, 183
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	2 cut(s)	122, 398
BspT107I	GGYRCC	7 cut(s)	77, 92, 149, 287, 329, 383, 598
BspTNI	GGTCTC	1 cut(s)	557
BsrFI	RCCGGY	2 cut(s)	284, 544
BssAI	RCCGGY	2 cut(s)	284, 544
BssECI	CCNNGG	7 cut(s)	129, 237, 266, 333, 351, 452, 567
BssHII	GCGCGC	1 cut(s)	135
BssMI	GATC	4 cut(s)	114, 276, 375, 390
BssNI	GRCGYC	7 cut(s)	54, 78, 93, 150, 288, 330, 384
BssT1I	CCWWGG	4 cut(s)	129, 237, 351, 567
Bst2UI	CCWGG	4 cut(s)	268, 444, 453, 505
Bst6I	CTCTTC	1 cut(s)	221
BstACI	GRCGYC	7 cut(s)	54, 78, 93, 150, 288, 330, 384
BstC8I	GCNNGC	4 cut(s)	137, 286, 369, 546
BstDEI	CTNAG	1 cut(s)	540
BstDSI	CCRYGG	3 cut(s)	237, 333, 351
BstF5I	GGATG	3 cut(s)	78, 330, 462
BstFNI	CGCG	3 cut(s)	137, 139, 183
BstH2I	RGCGCY	6 cut(s)	81, 96, 153, 291, 333, 387
BstHHI	GCGC	9 cut(s)	80, 95, 137, 139, 152, 252, 290, 332, 386
BstKTI	GATC	4 cut(s)	117, 279, 378, 393
BstMAI	GTCTC	2 cut(s)	146, 557
BstMBI	GATC	4 cut(s)	114, 276, 375, 390
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 189, 290, 344
BstNI	CCWGG	4 cut(s)	268, 444, 453, 505
BstSCI	CCNGG	8 cut(s)	33, 266, 386, 442, 451, 468, 496, 503
BstSLI	GKGCMC	2 cut(s)	35, 603
BstUI	CGCG	3 cut(s)	137, 139, 183
BstV1I	GCAGC	4 cut(s)	204, 351, 430, 433
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	5 cut(s)	65, 213, 371, 468, 548
BtgI	CCRYGG	3 cut(s)	237, 333, 351
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	78, 330, 462
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	4 cut(s)	137, 286, 369, 546
CfoI	GCGC	9 cut(s)	80, 95, 137, 139, 152, 252, 290, 332, 386
Cfr10I	RCCGGY	2 cut(s)	284, 544
Cfr13I	GGNCC	7 cut(s)	37, 63, 262, 342, 370, 467, 494
CpoI	CGGWCCG	1 cut(s)	37
CseI	GACGC	2 cut(s)	128, 172
CsiI	ACCWGGT	1 cut(s)	442
CspI	CGGWCCG	1 cut(s)	37
CviAII	CATG	5 cut(s)	169, 238, 313, 352, 394
DdeI	CTNAG	1 cut(s)	540
DinI	GGCGCC	6 cut(s)	79, 94, 151, 289, 331, 385
DpnI	GATC	4 cut(s)	116, 278, 377, 392
DpnII	GATC	4 cut(s)	114, 276, 375, 390
EaeI	YGGCCR	1 cut(s)	546
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
EciI	GGCGGA	1 cut(s)	334
Eco130I	CCWWGG	4 cut(s)	129, 237, 351, 567
Eco24I	GRGCYC	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	557
Eco47I	GGWCC	4 cut(s)	37, 262, 342, 494
EcoO109I	RGGNCCY	3 cut(s)	63, 262, 494
EcoRII	CCWGG	4 cut(s)	266, 442, 451, 503
EcoT14I	CCWWGG	4 cut(s)	129, 237, 351, 567
EcoT38I	GRGCYC	1 cut(s)	480
EgeI	GGCGCC	6 cut(s)	79, 94, 151, 289, 331, 385
EheI	GGCGCC	6 cut(s)	79, 94, 151, 289, 331, 385
ErhI	CCWWGG	4 cut(s)	129, 237, 351, 567
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	5 cut(s)	172, 241, 316, 355, 397
FaiI	YATR	5 cut(s)	170, 239, 314, 353, 395
FatI	CATG	5 cut(s)	168, 237, 312, 351, 393
FauI	CCCGC	2 cut(s)	53, 188
FblI	GTMKAC	1 cut(s)	243
FokI	GGATG	3 cut(s)	85, 337, 469
FriOI	GRGCYC	1 cut(s)	480
FspBI	CTAG	1 cut(s)	575
GlaI	GCGC	9 cut(s)	79, 94, 136, 138, 151, 251, 289, 331, 385
GsaI	CCCAGC	1 cut(s)	512
HaeII	RGCGCY	6 cut(s)	81, 96, 153, 291, 333, 387
HaeIII	GGCC	5 cut(s)	65, 213, 371, 468, 548
HapII	CCGG	8 cut(s)	35, 285, 297, 387, 470, 498, 545, 596
HgaI	GACGC	2 cut(s)	128, 172
HhaI	GCGC	9 cut(s)	80, 95, 137, 139, 152, 252, 290, 332, 386
Hin1I	GRCGYC	7 cut(s)	54, 78, 93, 150, 288, 330, 384
Hin1II	CATG	5 cut(s)	172, 241, 316, 355, 397
Hin6I	GCGC	9 cut(s)	78, 93, 135, 137, 150, 250, 288, 330, 384
HinP1I	GCGC	9 cut(s)	78, 93, 135, 137, 150, 250, 288, 330, 384
HinfI	GANTC	2 cut(s)	42, 427
HpaII	CCGG	8 cut(s)	35, 285, 297, 387, 470, 498, 545, 596
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	86, 432, 490
Hpy188III	TCNNGA	3 cut(s)	11, 70, 575
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	7 cut(s)	53, 56, 59, 86, 149, 188, 485
HpyAV	CCTTC	6 cut(s)	76, 106, 235, 250, 374, 485
HpyCH4IV	ACGT	2 cut(s)	17, 54
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 189, 290, 344
HpyF3I	CTNAG	1 cut(s)	540
HpySE526I	ACGT	2 cut(s)	17, 54
Hsp92I	GRCGYC	7 cut(s)	54, 78, 93, 150, 288, 330, 384
Hsp92II	CATG	5 cut(s)	172, 241, 316, 355, 397
HspAI	GCGC	9 cut(s)	78, 93, 135, 137, 150, 250, 288, 330, 384
KasI	GGCGCC	6 cut(s)	77, 92, 149, 287, 329, 383
KroI	GCCGGC	2 cut(s)	284, 544
KroNI	GCCGGC	2 cut(s)	286, 546
Kzo9I	GATC	4 cut(s)	114, 276, 375, 390
LmnI	GCTCC	3 cut(s)	25, 475, 595
Lsp1109I	GCAGC	4 cut(s)	204, 351, 430, 433
LweI	GCATC	1 cut(s)	577
MabI	ACCWGGT	1 cut(s)	442
MaeI	CTAG	1 cut(s)	575
MaeII	ACGT	2 cut(s)	17, 54
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	4 cut(s)	116, 278, 377, 392
MboI	GATC	4 cut(s)	114, 276, 375, 390
MboII	GAAGA	1 cut(s)	208
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	3 cut(s)	35, 480, 603
MluCI	AATT	1 cut(s)	604
Mly113I	GGCGCC	6 cut(s)	78, 93, 150, 288, 330, 384
MmeI	TCCRAC	1 cut(s)	64
MreI	CGCCGGCG	1 cut(s)	284
MroNI	GCCGGC	2 cut(s)	284, 544
MspA1I	CMGCKG	1 cut(s)	555
MspI	CCGG	8 cut(s)	35, 285, 297, 387, 470, 498, 545, 596
MspR9I	CCNGG	8 cut(s)	35, 268, 388, 444, 453, 470, 498, 505
MvaI	CCWGG	4 cut(s)	268, 444, 453, 505
MvnI	CGCG	3 cut(s)	137, 139, 183
MwoI	GCNNNNNNNGC	4 cut(s)	158, 189, 290, 344
NaeI	GCCGGC	2 cut(s)	286, 546
NarI	GGCGCC	6 cut(s)	78, 93, 150, 288, 330, 384
NciI	CCSGG	4 cut(s)	35, 388, 470, 498
NcoI	CCATGG	2 cut(s)	237, 351
NdeII	GATC	4 cut(s)	114, 276, 375, 390
NgoMIV	GCCGGC	2 cut(s)	284, 544
NlaIII	CATG	5 cut(s)	172, 241, 316, 355, 397
NmuCI	GTSAC	1 cut(s)	18
PauI	GCGCGC	1 cut(s)	135
PdiI	GCCGGC	2 cut(s)	286, 546
PfeI	GAWTC	2 cut(s)	42, 427
PflFI	GACNNNGTC	1 cut(s)	53
PluTI	GGCGCC	6 cut(s)	81, 96, 153, 291, 333, 387
PpuMI	RGGWCCY	2 cut(s)	262, 494
Psp5II	RGGWCCY	2 cut(s)	262, 494
Psp6I	CCWGG	4 cut(s)	266, 442, 451, 503
PspFI	CCCAGC	1 cut(s)	508
PspGI	CCWGG	4 cut(s)	266, 442, 451, 503
PspPI	GGNCC	7 cut(s)	37, 63, 262, 342, 370, 467, 494
PspPPI	RGGWCCY	2 cut(s)	262, 494
PsuI	RGATCY	1 cut(s)	114
PsyI	GACNNNGTC	1 cut(s)	53
PteI	GCGCGC	1 cut(s)	135
Rsr2I	CGGWCCG	1 cut(s)	37
RsrII	CGGWCCG	1 cut(s)	37
Sau3AI	GATC	4 cut(s)	114, 276, 375, 390
Sau96I	GGNCC	7 cut(s)	37, 63, 262, 342, 370, 467, 494
ScrFI	CCNGG	8 cut(s)	35, 268, 388, 444, 453, 470, 498, 505
SduI	GDGCHC	3 cut(s)	35, 480, 603
SetI	ASST	9 cut(s)	20, 57, 197, 227, 249, 344, 445, 573, 584
SexAI	ACCWGGT	1 cut(s)	442
SfaNI	GCATC	1 cut(s)	577
SfoI	GGCGCC	6 cut(s)	79, 94, 151, 289, 331, 385
SgrAI	CRCCGGYG	1 cut(s)	284
SinI	GGWCC	4 cut(s)	37, 262, 342, 494
Sse9I	AATT	1 cut(s)	604
SspDI	GGCGCC	6 cut(s)	77, 92, 149, 287, 329, 383
SspMI	CTAG	1 cut(s)	575
StyD4I	CCNGG	8 cut(s)	33, 266, 386, 442, 451, 468, 496, 503
StyI	CCWWGG	4 cut(s)	129, 237, 351, 567
TaiI	ACGT	2 cut(s)	20, 57
TaqI	TCGA	5 cut(s)	48, 228, 275, 378, 585
TaqII	GACCGA	1 cut(s)	54
TasI	AATT	1 cut(s)	604
TauI	GCSGC	6 cut(s)	155, 213, 293, 319, 350, 468
TfiI	GAWTC	2 cut(s)	42, 427
TseFI	GTSAC	1 cut(s)	18
TseI	GCWGC	4 cut(s)	192, 364, 418, 421
Tsp45I	GTSAC	1 cut(s)	18
TspDTI	ATGAA	2 cut(s)	94, 185
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	4 cut(s)	37, 262, 342, 494
XbaI	TCTAGA	1 cut(s)	574
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	1 cut(s)	575
ZraI	GACGTC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.