Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Reverse (-)

23711177 .. 23711497

Gene Structure 321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCCAAATCCAGACACTAATCGTTATGTCGATCGGGTGCCCGTGTCGGACTACTTCGTCGAAGTCGTCGGCGAAACCTTCGGGACAGGCACCGTCGGAGGAGCCACCTTACACTTCTTCAAAGGCATCTACAACTCACCCAAGGGCGCGCGTCTCGTCGGCGCCTATCACACCGTCCGCAAGAACGCGCCGCTCGTGGGAGTCAGATTCGCCGTCTGGGGCCGCCTCTTCGCCACCTTTGACTGCACGATGGAATACGTACATACGCCAAAAAGAGGTCCCCTCACTACAACGATTATGGTCAATGCCCACATACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

107

Amino Acids

11.76

Weight (kDa)

9.72

Isoelectric Point (pI)

15.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	23 - 88	1.8e-11	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AccB1I	GGYRCC	3 cut(s)	37, 89, 161
AccBSI	CCGCTC	1 cut(s)	193
AccII	CGCG	3 cut(s)	149, 151, 188
AciI	CCGC	3 cut(s)	178, 191, 223
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	2 cut(s)	197, 275
AgsI	TTSAA	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	158
AoxI	GGCC	1 cut(s)	220
AspLEI	GCGC	4 cut(s)	149, 151, 164, 190
AspS9I	GGNCC	2 cut(s)	220, 278
AsuHPI	GGTGA	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	42
BanI	GGYRCC	3 cut(s)	37, 89, 161
BauI	CACGAG	1 cut(s)	194
BccI	CCATC	1 cut(s)	244
BceAI	ACGGC	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	165
BisI	GCNGC	2 cut(s)	191, 223
BlsI	GCNGC	2 cut(s)	192, 224
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	220, 278
BmiI	GGNNCC	6 cut(s)	39, 91, 103, 163, 221, 280
BmsI	GCATC	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	267, 299
BsaAI	YACGTR	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 275
BseDI	CCNNGG	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	197, 275
BsePI	GCGCGC	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	42
BsgI	GTGCAG	1 cut(s)	229
Bsh1236I	CGCG	3 cut(s)	149, 151, 188
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	222
BshNI	GGYRCC	3 cut(s)	37, 89, 161
BsiEI	CGRYCG	1 cut(s)	34
BslFI	GGGAC	2 cut(s)	97, 264
BslI	CCNNNNNNNGG	2 cut(s)	197, 275
BsmAI	GTCTC	1 cut(s)	158
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	2 cut(s)	97, 264
BsnI	GGCC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	3 cut(s)	178, 191, 223
BspANI	GGCC	1 cut(s)	222
BspFNI	CGCG	3 cut(s)	149, 151, 188
BspLI	GGNNCC	6 cut(s)	39, 91, 103, 163, 221, 280
BspT107I	GGYRCC	3 cut(s)	37, 89, 161
BsrBI	CCGCTC	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	141
BssHII	GCGCGC	1 cut(s)	147
BssMI	GATC	1 cut(s)	31
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	141
Bst2BI	CACGAG	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	94, 175
Bst6I	CTCTTC	1 cut(s)	233
BstACI	GRCGYC	1 cut(s)	162
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	149
BstFNI	CGCG	3 cut(s)	149, 151, 188
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	4 cut(s)	149, 151, 164, 190
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	1 cut(s)	31
BstMCI	CGRYCG	1 cut(s)	34
BstSLI	GKGCMC	1 cut(s)	42
BstSNI	TACGTA	1 cut(s)	259
BstUI	CGCG	3 cut(s)	149, 151, 188
BsuRI	GGCC	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	149
CfoI	GCGC	4 cut(s)	149, 151, 164, 190
Cfr13I	GGNCC	2 cut(s)	220, 278
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	260
CviJI	RGCY	2 cut(s)	104, 222
CviKI_1	RGCY	2 cut(s)	104, 222
CviQI	GTAC	1 cut(s)	260
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco105I	TACGTA	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	141
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	158
FaiI	YATR	4 cut(s)	27, 264, 299, 314
FaqI	GGGAC	2 cut(s)	97, 264
Fnu4HI	GCNGC	2 cut(s)	191, 223
Fsp4HI	GCNGC	2 cut(s)	191, 223
GlaI	GCGC	4 cut(s)	148, 150, 163, 189
GluI	GCNGC	2 cut(s)	191, 223
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	222
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	4 cut(s)	149, 151, 164, 190
Hin1I	GRCGYC	1 cut(s)	162
Hin6I	GCGC	4 cut(s)	147, 149, 162, 188
HinP1I	GCGC	4 cut(s)	147, 149, 162, 188
HinfI	GANTC	2 cut(s)	201, 207
HphI	GGTGA	1 cut(s)	129
Hpy188I	TCNGA	3 cut(s)	49, 98, 206
Hpy188III	TCNNGA	2 cut(s)	11, 82
Hpy99I	CGWCG	4 cut(s)	62, 71, 98, 161
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	2 cut(s)	94, 175
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	162
HspAI	GCGC	4 cut(s)	147, 149, 162, 188
KasI	GGCGCC	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	3 cut(s)	24, 72, 202
LweI	GCATC	1 cut(s)	135
MaeII	ACGT	1 cut(s)	258
MalI	GATC	1 cut(s)	33
MbiI	CCGCTC	1 cut(s)	193
MboI	GATC	1 cut(s)	31
MboII	GAAGA	2 cut(s)	109, 220
MhlI	GDGCHC	1 cut(s)	42
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	2 cut(s)	27, 76
MnlI	CCTC	4 cut(s)	92, 236, 269, 293
MvnI	CGCG	3 cut(s)	149, 151, 188
NarI	GGCGCC	1 cut(s)	162
NdeII	GATC	1 cut(s)	31
NlaIV	GGNNCC	6 cut(s)	39, 91, 103, 163, 221, 280
PauI	GCGCGC	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 192
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	192, 224
Ple19I	CGATCG	1 cut(s)	34
PleI	GAGTC	1 cut(s)	209
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	278
Psp5II	RGGWCCY	1 cut(s)	278
PspN4I	GGNNCC	6 cut(s)	39, 91, 103, 163, 221, 280
PspPI	GGNCC	2 cut(s)	220, 278
PspPPI	RGGWCCY	1 cut(s)	278
PteI	GCGCGC	1 cut(s)	147
PvuI	CGATCG	1 cut(s)	34
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SatI	GCNGC	2 cut(s)	191, 223
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	2 cut(s)	220, 278
SchI	GAGTC	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	5 cut(s)	80, 110, 239, 261, 280
SfaNI	GCATC	1 cut(s)	135
SfoI	GGCGCC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	278
SnaBI	TACGTA	1 cut(s)	259
SsiI	CCGC	3 cut(s)	178, 191, 223
SspDI	GGCGCC	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	94, 175
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	30, 60
TauI	GCSGC	2 cut(s)	193, 225
TfiI	GAWTC	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.