Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Reverse (-)

51160429 .. 51167639

Gene Structure 7211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG310700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAAGATTTCGGGTCAGATCGCCCCAAATCAAATCCCTCTGATACCGAATCCGATTCTGACTCCAGTGCACAGAACAATAGAGATTCGGAGTCTGATTGCGAGAGTGAAACCTGAATCGAATTCTACTGATGAATTTGGGGCTTTCACCGAAAATGGGATGATGTTCAGAGTGAATGATGTGGGTGGGCCTCCTGGTGCAGTTGGGTCTGAAGAAAGCTCCTCCGGTGGGTCCTGGTTGGGAGGGTGGGTTGGCAAAGGCAAAGAGCCTGAGCCGGCGAGCAGCGGAAGGGAGACGAAGTTTCTGGAGAGTTTTGATGCTCCTCCGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

110

Amino Acids

11.69

Weight (kDa)

5.31

Isoelectric Point (pI)

50.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	285, 326
AcsI	RAATTY	2 cut(s)	121, 134
AcuI	CTGAAG	1 cut(s)	231
AfiI	CCNNNNNNNGG	2 cut(s)	156, 228
AjnI	CCWGG	2 cut(s)	193, 233
AluBI	AGCT	1 cut(s)	219
AluI	AGCT	1 cut(s)	219
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	287
Alw44I	GTGCAC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	188
ApaLI	GTGCAC	1 cut(s)	68
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	2 cut(s)	121, 134
AspS9I	GGNCC	2 cut(s)	188, 231
AsuHPI	GGTGA	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	294
BciT130I	CCWGG	2 cut(s)	195, 235
BcoDI	GTCTC	1 cut(s)	287
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme1390I	CCNGG	2 cut(s)	195, 235
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	188, 231
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	2 cut(s)	195, 235
BmsI	GCATC	1 cut(s)	307
BpmI	CTGGAG	2 cut(s)	48, 326
Bpu10I	CCTNAGC	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	224
BsaXI	ACNNNNNCTCC	4 cut(s)	234, 264, 284, 314
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 228
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	65
BseBI	CCWGG	2 cut(s)	195, 235
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	156, 228
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	2 cut(s)	211, 312
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	225, 275
BslI	CCNNNNNNNGG	2 cut(s)	156, 228
BsmAI	GTCTC	1 cut(s)	287
BsmBI	CGTCTC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	2 cut(s)	285, 326
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	232
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	274
BssMI	GATC	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	195, 235
BstC8I	GCNNGC	2 cut(s)	276, 280
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	18
BstNI	CCWGG	2 cut(s)	195, 235
BstSCI	CCNGG	2 cut(s)	193, 233
BstSLI	GKGCMC	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	276, 280
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	2 cut(s)	188, 231
CviJI	RGCY	5 cut(s)	143, 190, 219, 268, 274
CviKI_1	RGCY	5 cut(s)	143, 190, 219, 268, 274
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	193, 233
Esp3I	CGTCTC	1 cut(s)	287
Fnu4HI	GCNGC	1 cut(s)	283
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	1 cut(s)	283
GluI	GCNGC	1 cut(s)	283
GsuI	CTGGAG	2 cut(s)	48, 326
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	2 cut(s)	225, 275
HinfI	GANTC	6 cut(s)	49, 55, 61, 85, 91, 116
HpaII	CCGG	2 cut(s)	225, 275
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	8 cut(s)	18, 42, 54, 60, 90, 96, 170, 211
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	282
HpyCH4V	TGCA	2 cut(s)	70, 200
HpyF3I	CTNAG	1 cut(s)	270
KroI	GCCGGC	1 cut(s)	274
KroNI	GCCGGC	1 cut(s)	276
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	224, 325
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	1 cut(s)	307
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	2 cut(s)	16, 224
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	2 cut(s)	121, 134
MlyI	GAGTC	2 cut(s)	55, 100
MnlI	CCTC	5 cut(s)	48, 201, 232, 236, 333
MroNI	GCCGGC	1 cut(s)	274
MseI	TTAA	1 cut(s)	331
MspA1I	CMGCKG	1 cut(s)	285
MspI	CCGG	2 cut(s)	225, 275
MspR9I	CCNGG	2 cut(s)	195, 235
MvaI	CCWGG	2 cut(s)	195, 235
NaeI	GCCGGC	1 cut(s)	276
NdeII	GATC	1 cut(s)	18
NgoMIV	GCCGGC	1 cut(s)	274
NlaIV	GGNNCC	1 cut(s)	232
PdiI	GCCGGC	1 cut(s)	276
PfeI	GAWTC	4 cut(s)	49, 55, 85, 116
PkrI	GCNGC	1 cut(s)	284
PleI	GAGTC	2 cut(s)	55, 99
PpsI	GAGTC	2 cut(s)	55, 99
PpuMI	RGGWCCY	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	193, 233
PspGI	CCWGG	2 cut(s)	193, 233
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	2 cut(s)	188, 231
PspPPI	RGGWCCY	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	2 cut(s)	188, 231
SchI	GAGTC	2 cut(s)	55, 100
ScrFI	CCNGG	2 cut(s)	195, 235
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	2 cut(s)	115, 221
SfaNI	GCATC	1 cut(s)	307
SinI	GGWCC	1 cut(s)	231
Sse9I	AATT	2 cut(s)	121, 134
SsiI	CCGC	2 cut(s)	285, 326
StyD4I	CCNGG	2 cut(s)	193, 233
TaqI	TCGA	1 cut(s)	119
TasI	AATT	2 cut(s)	121, 134
TfiI	GAWTC	4 cut(s)	49, 55, 85, 116
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	1 cut(s)	282
TspDTI	ATGAA	2 cut(s)	17, 147
TspRI	CASTG	1 cut(s)	72
VneI	GTGCAC	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	2 cut(s)	121, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.