Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Forward (+)

4983312 .. 4984233

Gene Structure 922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG066400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGAACTCCAGAAACTTCTCGGCAGCCGTGCCCGGACCGAATCCTCGACGACGCCGGCGGAGCCTTCGGGATGGGCGCCATCGGAGGAGGCGCGTACCACTTCTTCAAAGGAATCTACAACTCGCCCAGGGGAGCGCGTCTCTCCGGCGCGTCCCAGGCCATCCGCATGAACGCGCCGCGCGTGGGCGGAGGGTTCGCCGTATGGGGCGGCCTCTTCTCCACCTTCGACTGCGCATTGGTCAACATTCGGCAAAAAGAGGACCCCTGGAACTCGATCATCTCCGGCGCGGCCACCGGCGGCTTCCTCCAGATGCGGCAGGGGCTCGGCGCAACGGCGAGGTCCGCCGCCGTGGGAGGGATGTTTTTGGCCCTAATCGAAGGCGCCGGGATCATTGTGGGCAAGGTCATGGAGCAGAAACAGAATGAGATGGCGATAGTTGCTGGAATGCACGGTCTGCCTGGACCGGAGGCGGTTGGGCCGGATGGAAGCTCCTCCGGTGGTTCGTGGTTAGGAGGGTGGTTTGGGAAAGGCAAAGAGGCTGAGGCGGCCGGCAGCGGAAGCGAGACGAAGGTTCTGGAGAGTTTTGATGCGCCTCCGGTGCCGAGTTTTGAGTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

207

Amino Acids

21.16

Weight (kDa)

6.13

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	15 - 122	1.1e-30	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	235
AccB1I	GGYRCC	3 cut(s)	77, 383, 601
AccII	CGCG	7 cut(s)	95, 139, 152, 176, 181, 183, 290
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	2 cut(s)	291, 549
AcyI	GRCGYC	3 cut(s)	54, 78, 384
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	185, 357
AgsI	TTSAA	2 cut(s)	109, 619
AjnI	CCWGG	4 cut(s)	128, 156, 266, 460
AluBI	AGCT	1 cut(s)	492
AluI	AGCT	1 cut(s)	492
Alw26I	GTCTC	2 cut(s)	146, 560
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	6 cut(s)	159, 211, 291, 369, 479, 549
ApeKI	GCWGC	2 cut(s)	25, 555
AspS9I	GGNCC	6 cut(s)	37, 262, 342, 370, 464, 479
AsuC2I	CCSGG	2 cut(s)	35, 388
AvaII	GGWCC	4 cut(s)	37, 262, 342, 464
BaeGI	GKGCMC	1 cut(s)	35
BanI	GGYRCC	3 cut(s)	77, 383, 601
BanII	GRGCYC	1 cut(s)	327
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
BbvCI	CCTCAGC	1 cut(s)	543
BbvI	GCAGC	2 cut(s)	37, 567
BccI	CCATC	5 cut(s)	67, 89, 170, 424, 479
BceAI	ACGGC	4 cut(s)	13, 185, 335, 351
BciT130I	CCWGG	4 cut(s)	130, 158, 268, 462
BcnI	CCSGG	2 cut(s)	35, 388
BcoDI	GTCTC	2 cut(s)	146, 560
BfoI	RGCGCY	2 cut(s)	81, 387
BisI	GCNGC	9 cut(s)	26, 179, 211, 291, 301, 317, 348, 549, 556
BlsI	GCNGC	9 cut(s)	27, 180, 212, 292, 302, 318, 349, 550, 557
Bme1390I	CCNGG	6 cut(s)	35, 130, 158, 268, 388, 462
Bme18I	GGWCC	4 cut(s)	37, 262, 342, 464
BmgT120I	GGNCC	6 cut(s)	37, 262, 342, 370, 464, 479
BmiI	GGNNCC	5 cut(s)	64, 79, 264, 385, 603
BmrFI	CCNGG	6 cut(s)	35, 130, 158, 268, 388, 462
BmsI	GCATC	2 cut(s)	303, 580
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
BpmI	CTGGAG	2 cut(s)	293, 599
Bpu10I	CCTNAGC	1 cut(s)	543
BpuMI	CCSGG	2 cut(s)	35, 388
BsaHI	GRCGYC	3 cut(s)	54, 78, 384
BsaJI	CCNNGG	5 cut(s)	128, 129, 156, 266, 351
BsaWI	WCCGGW	3 cut(s)	466, 497, 598
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 357
Bse118I	RCCGGY	3 cut(s)	56, 296, 551
BseBI	CCWGG	4 cut(s)	130, 158, 268, 462
BseDI	CCNNGG	5 cut(s)	128, 129, 156, 266, 351
BseGI	GGATG	4 cut(s)	78, 162, 366, 490
BseLI	CCNNNNNNNGG	2 cut(s)	185, 357
BseMII	CTCAG	1 cut(s)	534
BseRI	GAGGAG	2 cut(s)	102, 484
BseSI	GKGCMC	1 cut(s)	35
BseX3I	CGGCCG	1 cut(s)	549
BseXI	GCAGC	2 cut(s)	37, 567
Bsh1236I	CGCG	7 cut(s)	95, 139, 152, 176, 181, 183, 290
Bsh1285I	CGRYCG	1 cut(s)	552
BshFI	GGCC	6 cut(s)	161, 213, 293, 371, 481, 551
BshNI	GGYRCC	3 cut(s)	77, 383, 601
BsiEI	CGRYCG	1 cut(s)	552
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	2 cut(s)	185, 357
BsmAI	GTCTC	2 cut(s)	146, 560
BsmBI	CGTCTC	2 cut(s)	146, 560
BsmFI	GGGAC	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	6 cut(s)	161, 213, 293, 371, 481, 551
Bsp1286I	GDGCHC	2 cut(s)	35, 327
Bsp143I	GATC	2 cut(s)	276, 390
BspANI	GGCC	6 cut(s)	161, 213, 293, 371, 481, 551
BspCNI	CTCAG	1 cut(s)	535
BspFNI	CGCG	7 cut(s)	95, 139, 152, 176, 181, 183, 290
BspLI	GGNNCC	5 cut(s)	64, 79, 264, 385, 603
BspPI	GGATC	1 cut(s)	398
BspT107I	GGYRCC	3 cut(s)	77, 383, 601
BsrFI	RCCGGY	3 cut(s)	56, 296, 551
BssAI	RCCGGY	3 cut(s)	56, 296, 551
BssECI	CCNNGG	5 cut(s)	128, 129, 156, 266, 351
BssMI	GATC	2 cut(s)	276, 390
BssNI	GRCGYC	3 cut(s)	54, 78, 384
Bst2UI	CCWGG	4 cut(s)	130, 158, 268, 462
Bst4CI	ACNGT	1 cut(s)	455
Bst6I	CTCTTC	1 cut(s)	221
BstACI	GRCGYC	3 cut(s)	54, 78, 384
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstC8I	GCNNGC	2 cut(s)	58, 553
BstDEI	CTNAG	1 cut(s)	543
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	4 cut(s)	78, 162, 366, 490
BstFNI	CGCG	7 cut(s)	95, 139, 152, 176, 181, 183, 290
BstH2I	RGCGCY	2 cut(s)	81, 387
BstKTI	GATC	2 cut(s)	279, 393
BstMAI	GTCTC	2 cut(s)	146, 560
BstMBI	GATC	2 cut(s)	276, 390
BstMCI	CGRYCG	1 cut(s)	552
BstMWI	GCNNNNNNNGC	9 cut(s)	62, 158, 322, 344, 440, 457, 548, 561, 601
BstNI	CCWGG	4 cut(s)	130, 158, 268, 462
BstSCI	CCNGG	6 cut(s)	33, 128, 156, 266, 386, 460
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	7 cut(s)	95, 139, 152, 176, 181, 183, 290
BstV1I	GCAGC	2 cut(s)	37, 567
BstZI	CGGCCG	1 cut(s)	549
BsuRI	GGCC	6 cut(s)	161, 213, 293, 371, 481, 551
BtgI	CCRYGG	1 cut(s)	351
BtsCI	GGATG	4 cut(s)	78, 162, 366, 490
Cac8I	GCNNGC	2 cut(s)	58, 553
Cfr10I	RCCGGY	3 cut(s)	56, 296, 551
Cfr13I	GGNCC	6 cut(s)	37, 262, 342, 370, 464, 479
CpoI	CGGWCCG	1 cut(s)	37
CseI	GACGC	3 cut(s)	62, 128, 141
Csp6I	GTAC	1 cut(s)	97
CspI	CGGWCCG	1 cut(s)	37
CviAII	CATG	2 cut(s)	169, 409
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	543
DinI	GGCGCC	2 cut(s)	79, 385
DpnI	GATC	2 cut(s)	278, 392
DpnII	GATC	2 cut(s)	276, 390
EaeI	YGGCCR	2 cut(s)	291, 549
EagI	CGGCCG	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
EciI	GGCGGA	3 cut(s)	75, 204, 334
EclXI	CGGCCG	1 cut(s)	549
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	4 cut(s)	37, 262, 342, 464
Eco52I	CGGCCG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	4 cut(s)	128, 156, 266, 460
EcoT38I	GRGCYC	1 cut(s)	327
EgeI	GGCGCC	2 cut(s)	79, 385
EheI	GGCGCC	2 cut(s)	79, 385
Esp3I	CGTCTC	2 cut(s)	146, 560
FaeI	CATG	2 cut(s)	172, 412
FaiI	YATR	3 cut(s)	170, 205, 410
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	2 cut(s)	168, 408
Fnu4HI	GCNGC	9 cut(s)	26, 179, 211, 291, 301, 317, 348, 549, 556
FokI	GGATG	4 cut(s)	85, 149, 373, 497
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	9 cut(s)	26, 179, 211, 291, 301, 317, 348, 549, 556
FspI	TGCGCA	1 cut(s)	235
GluI	GCNGC	9 cut(s)	26, 179, 211, 291, 301, 317, 348, 549, 556
GsuI	CTGGAG	2 cut(s)	293, 599
HaeII	RGCGCY	2 cut(s)	81, 387
HaeIII	GGCC	6 cut(s)	161, 213, 293, 371, 481, 551
HgaI	GACGC	3 cut(s)	62, 128, 141
Hin1I	GRCGYC	3 cut(s)	54, 78, 384
Hin1II	CATG	2 cut(s)	172, 412
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	2 cut(s)	42, 114
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	4 cut(s)	11, 70, 310, 578
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	2 cut(s)	53, 56
HpyAV	CCTTC	4 cut(s)	76, 235, 374, 565
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4V	TGCA	1 cut(s)	451
HpyF10VI	GCNNNNNNNGC	9 cut(s)	62, 158, 322, 344, 440, 457, 548, 561, 601
HpyF3I	CTNAG	1 cut(s)	543
Hsp92I	GRCGYC	3 cut(s)	54, 78, 384
Hsp92II	CATG	2 cut(s)	172, 412
KasI	GGCGCC	2 cut(s)	77, 383
KroI	GCCGGC	2 cut(s)	56, 551
KroNI	GCCGGC	2 cut(s)	58, 553
Kzo9I	GATC	2 cut(s)	276, 390
LmnI	GCTCC	4 cut(s)	62, 134, 412, 497
Lsp1109I	GCAGC	2 cut(s)	37, 567
LweI	GCATC	2 cut(s)	303, 580
MalI	GATC	2 cut(s)	278, 392
MboI	GATC	2 cut(s)	276, 390
MboII	GAAGA	2 cut(s)	97, 208
MhlI	GDGCHC	2 cut(s)	35, 327
Mly113I	GGCGCC	2 cut(s)	78, 384
MreI	CGCCGGCG	1 cut(s)	56
MroNI	GCCGGC	2 cut(s)	56, 551
MslI	CAYNNNNRTG	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	558
MspR9I	CCNGG	6 cut(s)	35, 130, 158, 268, 388, 462
MteI	GCGCNGCGC	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	4 cut(s)	130, 158, 268, 462
MvnI	CGCG	7 cut(s)	95, 139, 152, 176, 181, 183, 290
MwoI	GCNNNNNNNGC	9 cut(s)	62, 158, 322, 344, 440, 457, 548, 561, 601
NaeI	GCCGGC	2 cut(s)	58, 553
NarI	GGCGCC	2 cut(s)	78, 384
NciI	CCSGG	2 cut(s)	35, 388
NdeII	GATC	2 cut(s)	276, 390
NgoMIV	GCCGGC	2 cut(s)	56, 551
NlaIII	CATG	2 cut(s)	172, 412
NlaIV	GGNNCC	5 cut(s)	64, 79, 264, 385, 603
NmeAIII	GCCGAG	1 cut(s)	306
NsbI	TGCGCA	1 cut(s)	235
PasI	CCCWGGG	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	1 cut(s)	453
PdiI	GCCGGC	2 cut(s)	58, 553
PfeI	GAWTC	2 cut(s)	42, 114
PkrI	GCNGC	9 cut(s)	27, 180, 212, 292, 302, 318, 349, 550, 557
PluTI	GGCGCC	2 cut(s)	81, 387
PpuMI	RGGWCCY	1 cut(s)	262
Psp5II	RGGWCCY	1 cut(s)	262
Psp6I	CCWGG	4 cut(s)	128, 156, 266, 460
PspGI	CCWGG	4 cut(s)	128, 156, 266, 460
PspN4I	GGNNCC	5 cut(s)	64, 79, 264, 385, 603
PspPI	GGNCC	6 cut(s)	37, 262, 342, 370, 464, 479
PspPPI	RGGWCCY	1 cut(s)	262
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	167
Rsr2I	CGGWCCG	1 cut(s)	37
RsrII	CGGWCCG	1 cut(s)	37
SatI	GCNGC	9 cut(s)	26, 179, 211, 291, 301, 317, 348, 549, 556
Sau3AI	GATC	2 cut(s)	276, 390
Sau96I	GGNCC	6 cut(s)	37, 262, 342, 370, 464, 479
ScrFI	CCNGG	6 cut(s)	35, 130, 158, 268, 388, 462
SduI	GDGCHC	2 cut(s)	35, 327
SetI	ASST	5 cut(s)	227, 344, 408, 494, 576
SfaNI	GCATC	2 cut(s)	303, 580
SfoI	GGCGCC	2 cut(s)	79, 385
SgrAI	CRCCGGYG	2 cut(s)	56, 296
SinI	GGWCC	4 cut(s)	37, 262, 342, 464
SmiMI	CAYNNNNRTG	1 cut(s)	167
SspDI	GGCGCC	2 cut(s)	77, 383
StyD4I	CCNGG	6 cut(s)	33, 128, 156, 266, 386, 460
TaaI	ACNGT	1 cut(s)	455
TaqI	TCGA	4 cut(s)	48, 228, 275, 378
TaqII	GACCGA	1 cut(s)	54
TauI	GCSGC	7 cut(s)	181, 213, 293, 303, 319, 350, 551
TfiI	GAWTC	2 cut(s)	42, 114
TseI	GCWGC	2 cut(s)	25, 555
TspDTI	ATGAA	1 cut(s)	185
VpaK11BI	GGWCC	4 cut(s)	37, 262, 342, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.