Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Forward (+)

5574023 .. 5574329

Gene Structure 307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46711

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCCCGGTCTACCTGGGCCGGAGGCGGTTGGATCAGAGGGAAGCCCTGGGCCGGAGGCGGTTAGGTCAGAAGGAAGCTCTAAGCCGGAGGCGGTTGGGTCAGAAGGAAGCGCTAGGCCGGAGGCGGTTGGGTCAGAAGGAAGCTCCTCCGGTGGTTCGTGGTTTGGGAAAGGCAAAGAGTCTGAGGCGGCCAGCAGCGGAAGCGAGACGAAGGTTCTGGAGAGTTTTGATGCGCCTCCGGTGCAGGGTTTTGAGATCAAAGTGACGTGGAGGGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

93

Amino Acids

9.25

Weight (kDa)

4.52

Isoelectric Point (pI)

59.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	10
AciI	CCGC	6 cut(s)	26, 59, 92, 125, 188, 198
AclWI	GGATC	1 cut(s)	40
AcoI	YGGCCR	1 cut(s)	189
AfeI	AGCGCT	1 cut(s)	112
AfiI	CCNNNNNNNGG	2 cut(s)	52, 245
AjiI	CACGTC	1 cut(s)	267
AjnI	CCWGG	2 cut(s)	13, 46
AluBI	AGCT	2 cut(s)	78, 144
AluI	AGCT	2 cut(s)	78, 144
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	40
Aor51HI	AGCGCT	1 cut(s)	112
AoxI	GGCC	4 cut(s)	17, 50, 116, 189
ApeKI	GCWGC	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	113, 235
AspS9I	GGNCC	2 cut(s)	17, 50
AsuC2I	CCSGG	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	207
BciT130I	CCWGG	2 cut(s)	15, 48
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	114
BisI	GCNGC	2 cut(s)	189, 196
BlsI	GCNGC	2 cut(s)	190, 197
Bme1390I	CCNGG	3 cut(s)	6, 15, 48
BmgBI	CACGTC	1 cut(s)	267
BmgT120I	GGNCC	2 cut(s)	17, 50
BmrFI	CCNGG	3 cut(s)	6, 15, 48
BmsI	GCATC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	6
BsaJI	CCNNGG	3 cut(s)	14, 46, 47
BsaWI	WCCGGW	2 cut(s)	149, 238
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 245
BseBI	CCWGG	2 cut(s)	15, 48
BseDI	CCNNGG	3 cut(s)	14, 46, 47
BseLI	CCNNNNNNNGG	2 cut(s)	52, 245
BseMII	CTCAG	1 cut(s)	174
BseRI	GAGGAG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	207
BsgI	GTGCAG	1 cut(s)	263
BshFI	GGCC	4 cut(s)	19, 52, 118, 191
BsiSI	CCGG	7 cut(s)	6, 20, 53, 86, 119, 150, 239
BslI	CCNNNNNNNGG	2 cut(s)	52, 245
BsmAI	GTCTC	1 cut(s)	200
BsmBI	CGTCTC	1 cut(s)	200
BsnI	GGCC	4 cut(s)	19, 52, 118, 191
Bsp143I	GATC	2 cut(s)	32, 255
BspACI	CCGC	6 cut(s)	26, 59, 92, 125, 188, 198
BspANI	GGCC	4 cut(s)	19, 52, 118, 191
BspCNI	CTCAG	1 cut(s)	175
BspPI	GGATC	1 cut(s)	40
BssECI	CCNNGG	3 cut(s)	14, 46, 47
BssMI	GATC	2 cut(s)	32, 255
Bst2UI	CCWGG	2 cut(s)	15, 48
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	2 cut(s)	81, 183
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	113, 235
BstKTI	GATC	2 cut(s)	35, 258
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	2 cut(s)	32, 255
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 241
BstNI	CCWGG	2 cut(s)	15, 48
BstSCI	CCNGG	3 cut(s)	4, 13, 46
BstV1I	GCAGC	1 cut(s)	207
BsuRI	GGCC	4 cut(s)	19, 52, 118, 191
BtrI	CACGTC	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	193
CfoI	GCGC	2 cut(s)	113, 235
Cfr13I	GGNCC	2 cut(s)	17, 50
CviJI	RGCY	9 cut(s)	19, 45, 52, 78, 85, 118, 144, 191, 275
CviKI_1	RGCY	9 cut(s)	19, 45, 52, 78, 85, 118, 144, 191, 275
DdeI	CTNAG	2 cut(s)	81, 183
DpnI	GATC	2 cut(s)	34, 257
DpnII	GATC	2 cut(s)	32, 255
EaeI	YGGCCR	1 cut(s)	189
Eco47III	AGCGCT	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	13, 46
Esp3I	CGTCTC	1 cut(s)	200
FblI	GTMKAC	1 cut(s)	10
Fnu4HI	GCNGC	2 cut(s)	189, 196
Fsp4HI	GCNGC	2 cut(s)	189, 196
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	2 cut(s)	112, 234
GluI	GCNGC	2 cut(s)	189, 196
GsuI	CTGGAG	1 cut(s)	239
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	4 cut(s)	19, 52, 118, 191
HapII	CCGG	7 cut(s)	6, 20, 53, 86, 119, 150, 239
HhaI	GCGC	2 cut(s)	113, 235
Hin6I	GCGC	2 cut(s)	111, 233
HinP1I	GCGC	2 cut(s)	111, 233
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	7 cut(s)	6, 20, 53, 86, 119, 150, 239
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	5 cut(s)	37, 70, 103, 136, 184
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	11
HpyAV	CCTTC	4 cut(s)	65, 98, 131, 205
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 241
HpyF3I	CTNAG	2 cut(s)	81, 183
HpySE526I	ACGT	1 cut(s)	266
HspAI	GCGC	2 cut(s)	111, 233
Kzo9I	GATC	2 cut(s)	32, 255
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	34, 257
MboI	GATC	2 cut(s)	32, 255
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	9 cut(s)	16, 31, 49, 82, 115, 157, 178, 246, 264
MspA1I	CMGCKG	1 cut(s)	198
MspI	CCGG	7 cut(s)	6, 20, 53, 86, 119, 150, 239
MspR9I	CCNGG	3 cut(s)	6, 15, 48
MvaI	CCWGG	2 cut(s)	15, 48
MwoI	GCNNNNNNNGC	2 cut(s)	201, 241
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	32, 255
NmuCI	GTSAC	1 cut(s)	262
PasI	CCCWGGG	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	190, 197
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp6I	CCWGG	2 cut(s)	13, 46
PspGI	CCWGG	2 cut(s)	13, 46
PspPI	GGNCC	2 cut(s)	17, 50
SatI	GCNGC	2 cut(s)	189, 196
Sau3AI	GATC	2 cut(s)	32, 255
Sau96I	GGNCC	2 cut(s)	17, 50
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	3 cut(s)	6, 15, 48
SetI	ASST	6 cut(s)	16, 68, 80, 146, 216, 269
SfaNI	GCATC	1 cut(s)	220
SsiI	CCGC	6 cut(s)	26, 59, 92, 125, 188, 198
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	3 cut(s)	4, 13, 46
TaiI	ACGT	1 cut(s)	269
TauI	GCSGC	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	10
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.