Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Forward (+)

35183210 .. 35189687

Gene Structure 6478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG337600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGACTGTGCAGATTCTATCCCTTTCCCCGAAAGGGCCATGTCATTGGCATTTGATATCCTCAATGACCTTGTGAAGGGATCTGCCAACCAGTACAAAGGAATTGTTGACTGTGTTCAGACTATTGTGAGGGAAGAAGGACCTCCCGCTCTTCTGAAGGAGGAGGATCCTGTGATCGTTGAGGATCAAGATTCCGGGTCAGATCGCCCCGAATCGAATCCCTCTGATACCGAATCCGATTCCAACTCCAGTGCACAGAACGATAGAGATTCGGAGTCTGATTGCGAGAGTGAAACCACTGAATCGAATTCTACTGATGAATTTGGGGCTTTCACCGGAAATGGGATGATGTTCAGAGTGAATGATATGGGTGGGCCTCCCGGCACTGTTGGCTCTGAAGAAAGCTCCTCCAGTAGGTCCTGGTTGGGAAGGTGGGTTGGGAGAGGCAAAGAACCTGAGCCGGCGAGCAGCGGAAGTGAGACGAAGGTTCTGGAGAGTTTTGATGCTCCTCCAGTGCCCAGTTTTGATTCGGACCCCGAAAATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

182

Amino Acids

19.5

Weight (kDa)

4.05

Isoelectric Point (pI)

63.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	149
AciI	CCGC	2 cut(s)	147, 471
AclWI	GGATC	4 cut(s)	88, 161, 174, 192
AcsI	RAATTY	2 cut(s)	307, 320
AcuI	CTGAAG	2 cut(s)	176, 417
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	4 cut(s)	34, 76, 342, 414
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	1 cut(s)	405
AluI	AGCT	1 cut(s)	405
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	473
Alw44I	GTGCAC	1 cut(s)	252
AlwI	GGATC	4 cut(s)	88, 161, 174, 192
AoxI	GGCC	2 cut(s)	36, 374
ApaLI	GTGCAC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	468
ApoI	RAATTY	2 cut(s)	307, 320
AspS9I	GGNCC	5 cut(s)	36, 140, 374, 417, 532
AsuC2I	CCSGG	2 cut(s)	196, 381
AsuHPI	GGTGA	1 cut(s)	325
AvaII	GGWCC	3 cut(s)	140, 417, 532
BaeGI	GKGCMC	2 cut(s)	256, 519
BamHI	GGATCC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	480
BciT130I	CCWGG	1 cut(s)	421
BcnI	CCSGG	2 cut(s)	196, 381
BcoDI	GTCTC	1 cut(s)	473
BisI	GCNGC	1 cut(s)	469
BlsI	GCNGC	1 cut(s)	470
Bme1390I	CCNGG	3 cut(s)	196, 381, 421
Bme18I	GGWCC	3 cut(s)	140, 417, 532
BmgT120I	GGNCC	5 cut(s)	36, 140, 374, 417, 532
BmiI	GGNNCC	2 cut(s)	168, 534
BmrFI	CCNGG	3 cut(s)	196, 381, 421
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	493
BmuI	ACTGGG	1 cut(s)	513
BpmI	CTGGAG	4 cut(s)	232, 394, 495, 512
Bpu10I	CCTNAGC	1 cut(s)	456
BpuMI	CCSGG	2 cut(s)	196, 381
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 76, 342, 414
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	5 cut(s)	91, 249, 411, 512, 519
BseBI	CCWGG	1 cut(s)	421
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	4 cut(s)	34, 76, 342, 414
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	5 cut(s)	91, 249, 411, 512, 519
BseRI	GAGGAG	3 cut(s)	176, 397, 498
BseSI	GKGCMC	2 cut(s)	256, 519
BseXI	GCAGC	1 cut(s)	480
BsgI	GTGCAG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	38, 376
BsiHKAI	GWGCWC	1 cut(s)	256
BsiSI	CCGG	4 cut(s)	195, 336, 381, 461
BslI	CCNNNNNNNGG	4 cut(s)	34, 76, 342, 414
BsmAI	GTCTC	1 cut(s)	473
BsmBI	CGTCTC	1 cut(s)	473
BsnI	GGCC	2 cut(s)	38, 376
Bsp1286I	GDGCHC	2 cut(s)	256, 519
Bsp143I	GATC	5 cut(s)	80, 166, 174, 184, 202
BspACI	CCGC	2 cut(s)	147, 471
BspANI	GGCC	2 cut(s)	38, 376
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	168, 534
BspPI	GGATC	4 cut(s)	88, 161, 174, 192
BspQI	GCTCTTC	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	460
BsrI	ACTGG	5 cut(s)	91, 249, 411, 512, 519
BssAI	RCCGGY	1 cut(s)	460
BssMI	GATC	5 cut(s)	80, 166, 174, 184, 202
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	3 cut(s)	8, 113, 388
Bst6I	CTCTTC	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	462, 466
BstDEI	CTNAG	1 cut(s)	456
BstENI	CCTNNNNNAGG	2 cut(s)	74, 412
BstF5I	GGATG	1 cut(s)	351
BstKTI	GATC	5 cut(s)	83, 169, 177, 187, 205
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	5 cut(s)	80, 166, 174, 184, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	390
BstNI	CCWGG	1 cut(s)	421
BstSCI	CCNGG	3 cut(s)	194, 379, 419
BstSLI	GKGCMC	2 cut(s)	256, 519
BstV1I	GCAGC	1 cut(s)	480
BstX2I	RGATCY	2 cut(s)	80, 166
BstXI	CCANNNNNNTGG	1 cut(s)	46
BstYI	RGATCY	2 cut(s)	80, 166
BsuRI	GGCC	2 cut(s)	38, 376
BtsCI	GGATG	1 cut(s)	351
BtsIMutI	CAGTG	4 cut(s)	256, 297, 384, 519
Cac8I	GCNNGC	2 cut(s)	462, 466
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	5 cut(s)	36, 140, 374, 417, 532
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	6 cut(s)	38, 329, 376, 393, 405, 460
CviKI_1	RGCY	6 cut(s)	38, 329, 376, 393, 405, 460
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	5 cut(s)	82, 168, 176, 186, 204
DpnII	GATC	5 cut(s)	80, 166, 174, 184, 202
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	58
Eco47I	GGWCC	3 cut(s)	140, 417, 532
Eco57I	CTGAAG	2 cut(s)	176, 417
EcoNI	CCTNNNNNAGG	2 cut(s)	74, 412
EcoO109I	RGGNCCY	2 cut(s)	140, 417
EcoRI	GAATTC	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	419
EcoRV	GATATC	1 cut(s)	58
Esp3I	CGTCTC	1 cut(s)	473
FaeI	CATG	1 cut(s)	43
FaiI	YATR	2 cut(s)	41, 368
FatI	CATG	1 cut(s)	39
FauI	CCCGC	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	469
FokI	GGATG	1 cut(s)	358
Fsp4HI	GCNGC	1 cut(s)	469
GluI	GCNGC	1 cut(s)	469
GsuI	CTGGAG	4 cut(s)	232, 394, 495, 512
HaeIII	GGCC	2 cut(s)	38, 376
HapII	CCGG	4 cut(s)	195, 336, 381, 461
Hin1II	CATG	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HpaII	CCGG	4 cut(s)	195, 336, 381, 461
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	2 cut(s)	109, 254
Hpy188III	TCNNGA	2 cut(s)	188, 491
Hpy8I	GTNNAC	2 cut(s)	109, 254
HpyAV	CCTTC	5 cut(s)	70, 131, 151, 423, 478
HpyCH4III	ACNGT	3 cut(s)	8, 113, 388
HpyCH4V	TGCA	2 cut(s)	11, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	390
HpyF3I	CTNAG	1 cut(s)	456
Hsp92II	CATG	1 cut(s)	43
KroI	GCCGGC	1 cut(s)	460
KroNI	GCCGGC	1 cut(s)	462
Kzo9I	GATC	5 cut(s)	80, 166, 174, 184, 202
LguI	GCTCTTC	1 cut(s)	156
LmnI	GCTCC	2 cut(s)	410, 511
Lsp1109I	GCAGC	1 cut(s)	480
LweI	GCATC	1 cut(s)	493
MalI	GATC	5 cut(s)	82, 168, 176, 186, 204
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	5 cut(s)	80, 166, 174, 184, 202
MboII	GAAGA	3 cut(s)	143, 146, 410
MflI	RGATCY	2 cut(s)	80, 166
MhlI	GDGCHC	2 cut(s)	256, 519
MluCI	AATT	4 cut(s)	102, 307, 320, 541
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	267
MroNI	GCCGGC	1 cut(s)	460
MspA1I	CMGCKG	1 cut(s)	471
MspI	CCGG	4 cut(s)	195, 336, 381, 461
MspR9I	CCNGG	3 cut(s)	196, 381, 421
MvaI	CCWGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	390
NaeI	GCCGGC	1 cut(s)	462
NciI	CCSGG	2 cut(s)	196, 381
NdeII	GATC	5 cut(s)	80, 166, 174, 184, 202
NgoMIV	GCCGGC	1 cut(s)	460
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	2 cut(s)	168, 534
PciSI	GCTCTTC	1 cut(s)	156
PdiI	GCCGGC	1 cut(s)	462
PfeI	GAWTC	9 cut(s)	14, 191, 212, 217, 233, 239, 269, 302, 527
PkrI	GCNGC	1 cut(s)	470
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PpuMI	RGGWCCY	2 cut(s)	140, 417
Psp5II	RGGWCCY	2 cut(s)	140, 417
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	2 cut(s)	168, 534
PspPI	GGNCC	5 cut(s)	36, 140, 374, 417, 532
PspPPI	RGGWCCY	2 cut(s)	140, 417
PsuI	RGATCY	2 cut(s)	80, 166
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SapI	GCTCTTC	1 cut(s)	156
SatI	GCNGC	1 cut(s)	469
Sau3AI	GATC	5 cut(s)	80, 166, 174, 184, 202
Sau96I	GGNCC	5 cut(s)	36, 140, 374, 417, 532
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	3 cut(s)	196, 381, 421
SduI	GDGCHC	2 cut(s)	256, 519
SetI	ASST	7 cut(s)	72, 145, 407, 419, 434, 457, 489
SfaNI	GCATC	1 cut(s)	493
SinI	GGWCC	3 cut(s)	140, 417, 532
Sse9I	AATT	4 cut(s)	102, 307, 320, 541
SsiI	CCGC	2 cut(s)	147, 471
StyD4I	CCNGG	3 cut(s)	194, 379, 419
TaaI	ACNGT	3 cut(s)	8, 113, 388
TaqI	TCGA	2 cut(s)	215, 305
TasI	AATT	4 cut(s)	102, 307, 320, 541
TatI	WGTACW	1 cut(s)	93
TfiI	GAWTC	9 cut(s)	14, 191, 212, 217, 233, 239, 269, 302, 527
TscAI	CASTG	4 cut(s)	256, 304, 391, 519
TseI	GCWGC	1 cut(s)	468
TspDTI	ATGAA	1 cut(s)	333
TspRI	CASTG	4 cut(s)	256, 304, 391, 519
VneI	GTGCAC	1 cut(s)	252
VpaK11BI	GGWCC	3 cut(s)	140, 417, 532
XagI	CCTNNNNNAGG	2 cut(s)	74, 412
XapI	RAATTY	2 cut(s)	307, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.