Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Reverse (-)

1767396 .. 1768654

Gene Structure 1259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0021700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGGCTGTGGCCACTCGCTTCTCTCTGTATTTTCCCCTGTGATTGACGACGTGAACAAAGAAAGAAAGAGACAAACAACGTTGAAGGTCGACCTTACAGAAGAGAGAAGAATAAAAAGGATTGAAGATGATGTCGACGGAGCTCGTAAAGTGCACGCAGCCATGAAGCGCCTCATGTTCGCCGTCGACGGTGGTAGTAGGCCTGAAGACCTAACAAGGTTGACCGATGGCATACCTGAGGTCGAGATCAACCTGTCCAAGTGCGTTGAGTATTTGAACAGGATACATGACCAAATTGTTGAGCTAAAACAAAATAGTATCAAAAAGAGAGAAGCAAAGTGGTCTGAGCTTCCTACTGAGCTTCTAGAGTCCATCTTGAAAAAACTTATACCTTCTGAATTTGACATCCTTGGCTTTAGAGATATTCTATATTTTAAAGCCGTCTGTCATTCCTGGAGAACCGCTGCAAAATCTTGTAGCTCTTACGTTCCATTGCCTCGAACTCCATGTCTCTTACTTCATAACTACCAATCCTTCCTCTTTGATCCCATTGGAAAAAAGATGCACAAACTCAGGAACGTCTATGACAATGGCAATGTTTTTGGTGACCTTCTTTCTTGTACAAGGTGTGTGGGTTCATCACATGGGTGGATGGTCGTGTTTTACAAAGATTCAGAATTATCAACGGCACATCTTCTTAATCCTATTTCAAGAGCCAGCATTCAAATCCCAAGCATAGAGACTCTTGATAAGCACAGCTTCTTAGAATGCATCTCTAAAGGTATTGTTTCTTCCAATCCGTCTAGCAACAAGAACTTTTTTGTGGTAGTGAAATATGACAGGAAACTAGCATTCTGGAAGCATGGAGACAAATATTCATGGACAAAGTTGAATGATAATGTGCATTATAAGGATATTATGTTTCACGATGACCAATTAATTGCATTATCAGCCACAGGGTCAACTGAGATTTGGAACTTAAGGGAAAGGGTACTTCTGGAACCTAGGTATATTAAGGACTCTCCTGCTCGCAGATCAGTTACAGGTACCTATTTGGTGGAGTCATTGATGGGTGAGATTTTATGCTTGGAACAAAGTGGTATCGTTAATGCCACTGCCGAACCCATGTTTCTTAGAGCATCTCCAACCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

384

Amino Acids

43.83

Weight (kDa)

8.59

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	204 - 365	1.7e-27	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	909
Acc65I	GGTACC	1 cut(s)	1046
AccB1I	GGYRCC	1 cut(s)	1046
AccI	GTMKAC	3 cut(s)	90, 135, 186
AciI	CCGC	1 cut(s)	462
AclI	AACGTT	1 cut(s)	80
AclWI	GGATC	1 cut(s)	539
AcoI	YGGCCR	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	398
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	3 cut(s)	622, 993, 1048
AflII	CTTAAG	1 cut(s)	979
AgsI	TTSAA	7 cut(s)	85, 125, 277, 379, 711, 725, 892
AjiI	CACGTC	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	452
AleI	CACNNNNGTG	1 cut(s)	646
AluBI	AGCT	6 cut(s)	143, 304, 349, 361, 480, 759
AluI	AGCT	6 cut(s)	143, 304, 349, 361, 480, 759
Alw21I	GWGCWC	2 cut(s)	145, 156
Alw26I	GTCTC	4 cut(s)	64, 515, 734, 861
Alw44I	GTGCAC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	539
AoxI	GGCC	2 cut(s)	10, 200
ApaLI	GTGCAC	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	158, 464
ApoI	RAATTY	1 cut(s)	398
ArsI	GACNNNNNNTTYG	2 cut(s)	493, 525
AseI	ATTAAT	1 cut(s)	938
Asp718I	GGTACC	1 cut(s)	1046
AspA2I	CCTAGG	1 cut(s)	1004
AspLEI	GCGC	1 cut(s)	171
AsuHPI	GGTGA	2 cut(s)	617, 1085
AvrII	CCTAGG	1 cut(s)	1004
AxyI	CCTNAGG	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	12
BanI	GGYRCC	1 cut(s)	1046
BanII	GRGCYC	1 cut(s)	145
BarI	GAAGNNNNNNTAC	2 cut(s)	775, 807
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	145, 156
BbvI	GCAGC	2 cut(s)	170, 451
BccI	CCATC	4 cut(s)	221, 380, 646, 1063
BceAI	ACGGC	3 cut(s)	167, 425, 702
BciT130I	CCWGG	1 cut(s)	454
BciVI	GTATCC	1 cut(s)	276
BcoDI	GTCTC	4 cut(s)	64, 515, 734, 861
BfaI	CTAG	4 cut(s)	365, 804, 848, 1005
BfoI	RGCGCY	1 cut(s)	172
BfrI	CTTAAG	1 cut(s)	979
BfuI	GTATCC	1 cut(s)	276
BisI	GCNGC	2 cut(s)	159, 465
BlnI	CCTAGG	1 cut(s)	1004
BlsI	GCNGC	2 cut(s)	160, 466
Bme1390I	CCNGG	1 cut(s)	454
BmgBI	CACGTC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	1002, 1048
BmrFI	CCNGG	1 cut(s)	454
BmsI	GCATC	3 cut(s)	552, 780, 1148
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	475
BsaJI	CCNNGG	2 cut(s)	409, 1004
Bse21I	CCTNAGG	1 cut(s)	237
Bse3DI	GCAATG	2 cut(s)	491, 601
BseBI	CCWGG	1 cut(s)	454
BseDI	CCNNGG	2 cut(s)	409, 1004
BseGI	GGATG	2 cut(s)	405, 657
BseMI	GCAATG	2 cut(s)	491, 601
BseMII	CTCAG	5 cut(s)	228, 336, 348, 586, 957
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	170, 451
BshFI	GGCC	2 cut(s)	12, 202
BshNI	GGYRCC	1 cut(s)	1046
BsiHKAI	GWGCWC	2 cut(s)	145, 156
BsmAI	GTCTC	4 cut(s)	64, 515, 734, 861
BsmI	GAATGC	3 cut(s)	720, 773, 851
BsnI	GGCC	2 cut(s)	12, 202
Bsp1286I	GDGCHC	2 cut(s)	145, 156
Bsp1407I	TGTACA	1 cut(s)	620
Bsp143I	GATC	3 cut(s)	246, 544, 1034
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	2 cut(s)	12, 202
BspCNI	CTCAG	5 cut(s)	229, 337, 349, 585, 958
BspLI	GGNNCC	2 cut(s)	1002, 1048
BspPI	GGATC	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	1046
BspTI	CTTAAG	1 cut(s)	979
BsrDI	GCAATG	2 cut(s)	491, 601
BsrGI	TGTACA	1 cut(s)	620
BssECI	CCNNGG	2 cut(s)	409, 1004
BssMI	GATC	3 cut(s)	246, 544, 1034
BssT1I	CCWWGG	2 cut(s)	409, 1004
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	979
BstAUI	TGTACA	1 cut(s)	620
BstC8I	GCNNGC	3 cut(s)	156, 718, 1030
BstDEI	CTNAG	7 cut(s)	237, 345, 357, 572, 763, 966, 1133
BstEII	GGTNACC	1 cut(s)	605
BstF5I	GGATG	2 cut(s)	405, 657
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	3 cut(s)	249, 547, 1037
BstMAI	GTCTC	4 cut(s)	64, 515, 734, 861
BstMBI	GATC	3 cut(s)	246, 544, 1034
BstMWI	GCNNNNNNNGC	1 cut(s)	950
BstNI	CCWGG	1 cut(s)	454
BstPI	GGTNACC	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	452
BstSLI	GKGCMC	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	170, 451
BstV2I	GAAGAC	1 cut(s)	213
Bsu36I	CCTNAGG	1 cut(s)	237
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	12, 202
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	405, 657
BtsI	GCAGTG	1 cut(s)	1113
BtsIMutI	CAGTG	1 cut(s)	1113
Cac8I	GCNNGC	3 cut(s)	156, 718, 1030
CfoI	GCGC	1 cut(s)	171
Csp6I	GTAC	3 cut(s)	621, 992, 1047
CspCI	CAANNNNNGTGG	2 cut(s)	612, 647
CviAII	CATG	8 cut(s)	163, 175, 287, 507, 644, 863, 879, 1126
CviQI	GTAC	3 cut(s)	621, 992, 1047
DdeI	CTNAG	7 cut(s)	237, 345, 357, 572, 763, 966, 1133
DpnI	GATC	3 cut(s)	248, 546, 1036
DpnII	GATC	3 cut(s)	246, 544, 1034
DraI	TTTAAA	1 cut(s)	436
EaeI	YGGCCR	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	143
Eco130I	CCWWGG	2 cut(s)	409, 1004
Eco147I	AGGCCT	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	225
Eco81I	CCTNAGG	1 cut(s)	237
Eco91I	GGTNACC	1 cut(s)	605
EcoICRI	GAGCTC	1 cut(s)	143
EcoO65I	GGTNACC	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	452
EcoT14I	CCWWGG	2 cut(s)	409, 1004
EcoT22I	ATGCAT	1 cut(s)	773
EcoT38I	GRGCYC	1 cut(s)	145
ErhI	CCWWGG	2 cut(s)	409, 1004
FaeI	CATG	8 cut(s)	166, 178, 290, 510, 647, 866, 882, 1129
FalI	AAGNNNNNCTT	2 cut(s)	743, 775
FatI	CATG	8 cut(s)	162, 174, 286, 506, 643, 862, 878, 1125
FblI	GTMKAC	3 cut(s)	90, 135, 186
Fnu4HI	GCNGC	2 cut(s)	159, 465
FokI	GGATG	2 cut(s)	392, 664
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	2 cut(s)	159, 465
FspBI	CTAG	4 cut(s)	365, 804, 848, 1005
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	2 cut(s)	159, 465
GsuI	CTGGAG	1 cut(s)	475
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	12, 202
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	8 cut(s)	166, 178, 290, 510, 647, 866, 882, 1129
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	5 cut(s)	91, 136, 187, 222, 963
HindII	GTYRAC	5 cut(s)	91, 136, 187, 222, 963
HinfI	GANTC	5 cut(s)	368, 671, 742, 1019, 1061
HphI	GGTGA	2 cut(s)	617, 1085
Hpy166II	GTNNAC	7 cut(s)	55, 91, 136, 154, 187, 222, 963
Hpy188I	TCNGA	3 cut(s)	346, 397, 676
Hpy188III	TCNNGA	9 cut(s)	244, 365, 376, 574, 711, 746, 856, 926, 998
Hpy8I	GTNNAC	7 cut(s)	55, 91, 136, 154, 187, 222, 963
Hpy99I	CGWCG	4 cut(s)	53, 140, 188, 191
HpyAV	CCTTC	4 cut(s)	79, 402, 544, 620
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	4 cut(s)	51, 80, 486, 579
HpyCH4V	TGCA	6 cut(s)	154, 467, 565, 771, 904, 944
HpyF10VI	GCNNNNNNNGC	1 cut(s)	950
HpyF3I	CTNAG	7 cut(s)	237, 345, 357, 572, 763, 966, 1133
HpySE526I	ACGT	4 cut(s)	51, 80, 486, 579
Hsp92II	CATG	8 cut(s)	166, 178, 290, 510, 647, 866, 882, 1129
HspAI	GCGC	1 cut(s)	169
KpnI	GGTACC	1 cut(s)	1050
Kzo9I	GATC	3 cut(s)	246, 544, 1034
LmnI	GCTCC	1 cut(s)	140
Lsp1109I	GCAGC	2 cut(s)	170, 451
LweI	GCATC	3 cut(s)	552, 780, 1148
MaeI	CTAG	4 cut(s)	365, 804, 848, 1005
MaeII	ACGT	4 cut(s)	51, 80, 486, 579
MaeIII	GTNAC	2 cut(s)	605, 1039
MalI	GATC	3 cut(s)	248, 546, 1036
MboI	GATC	3 cut(s)	246, 544, 1034
MboII	GAAGA	6 cut(s)	113, 120, 137, 218, 686, 783
MhlI	GDGCHC	2 cut(s)	145, 156
MlsI	TGGCCA	1 cut(s)	12
MluCI	AATT	5 cut(s)	294, 398, 677, 935, 939
MluNI	TGGCCA	1 cut(s)	12
MlyI	GAGTC	4 cut(s)	377, 736, 1013, 1070
MnlI	CCTC	4 cut(s)	182, 232, 507, 548
Mox20I	TGGCCA	1 cut(s)	12
Mph1103I	ATGCAT	1 cut(s)	773
MscI	TGGCCA	1 cut(s)	12
MseI	TTAA	6 cut(s)	435, 699, 938, 980, 1014, 1107
MslI	CAYNNNNRTG	1 cut(s)	646
Msp20I	TGGCCA	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	464
MspCI	CTTAAG	1 cut(s)	979
MspR9I	CCNGG	1 cut(s)	454
Mva1269I	GAATGC	3 cut(s)	720, 773, 851
MvaI	CCWGG	1 cut(s)	454
MwoI	GCNNNNNNNGC	1 cut(s)	950
NdeII	GATC	3 cut(s)	246, 544, 1034
NlaIII	CATG	8 cut(s)	166, 178, 290, 510, 647, 866, 882, 1129
NlaIV	GGNNCC	2 cut(s)	1002, 1048
NmuCI	GTSAC	1 cut(s)	605
NsiI	ATGCAT	1 cut(s)	773
OliI	CACNNNNGTG	1 cut(s)	646
PceI	AGGCCT	1 cut(s)	202
PctI	GAATGC	3 cut(s)	720, 773, 851
PfeI	GAWTC	1 cut(s)	671
PfoI	TCCNGGA	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	160, 466
PleI	GAGTC	4 cut(s)	376, 736, 1013, 1069
PpsI	GAGTC	4 cut(s)	376, 736, 1013, 1069
PshBI	ATTAAT	1 cut(s)	938
PsiI	TTATAA	1 cut(s)	909
Psp124BI	GAGCTC	1 cut(s)	145
Psp1406I	AACGTT	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	452
PspEI	GGTNACC	1 cut(s)	605
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	2 cut(s)	1002, 1048
RsaI	GTAC	3 cut(s)	622, 993, 1048
RsaNI	GTAC	3 cut(s)	621, 992, 1047
RseI	CAYNNNNRTG	1 cut(s)	646
SacI	GAGCTC	1 cut(s)	145
SalI	GTCGAC	3 cut(s)	89, 134, 185
SaqAI	TTAA	6 cut(s)	435, 699, 938, 980, 1014, 1107
SatI	GCNGC	2 cut(s)	159, 465
Sau3AI	GATC	3 cut(s)	246, 544, 1034
SchI	GAGTC	4 cut(s)	377, 736, 1013, 1070
ScrFI	CCNGG	1 cut(s)	454
SduI	GDGCHC	2 cut(s)	145, 156
SfaNI	GCATC	3 cut(s)	552, 780, 1148
SgrDI	CGTCGACG	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	646
SmlI	CTYRAG	1 cut(s)	979
SmoI	CTYRAG	1 cut(s)	979
Sse9I	AATT	5 cut(s)	294, 398, 677, 935, 939
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	1 cut(s)	462
SspI	AATATT	1 cut(s)	875
SspMI	CTAG	4 cut(s)	365, 804, 848, 1005
SstI	GAGCTC	1 cut(s)	145
StuI	AGGCCT	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	452
StyI	CCWWGG	2 cut(s)	409, 1004
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	4 cut(s)	54, 83, 489, 582
TaqI	TCGA	5 cut(s)	90, 135, 186, 243, 499
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	5 cut(s)	294, 398, 677, 935, 939
TatI	WGTACW	1 cut(s)	620
TfiI	GAWTC	1 cut(s)	671
Tru1I	TTAA	6 cut(s)	435, 699, 938, 980, 1014, 1107
Tru9I	TTAA	6 cut(s)	435, 699, 938, 980, 1014, 1107
TscAI	CASTG	1 cut(s)	1120
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	2 cut(s)	158, 464
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	4 cut(s)	179, 509, 627, 867
TspGWI	ACGGA	2 cut(s)	153, 789
TspRI	CASTG	1 cut(s)	1120
Vha464I	CTTAAG	1 cut(s)	979
VneI	GTGCAC	1 cut(s)	152
VspI	ATTAAT	1 cut(s)	938
XapI	RAATTY	1 cut(s)	398
XbaI	TCTAGA	1 cut(s)	364
XmaJI	CCTAGG	1 cut(s)	1004
XmiI	GTMKAC	3 cut(s)	90, 135, 186
XspI	CTAG	4 cut(s)	365, 804, 848, 1005
Zsp2I	ATGCAT	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.