MD15G1196700.v1.1

Mitochondrial import inner membrane translocase subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
15606726 .. 15608568
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1196700.v1.1.491

Sequence Viewer

Length: 687 bp
ATGGGAACTCCAGAAACATCCCGAGAACCGTGCCCCGACCGCATCCTCGACGACATAGGCGGCGCCTTCGGCATGGGCGCTGTCGGCGGTTCCGCCTTCCACTTCATCAAGGGCGTCTACAACTCCCCCTCCGGCGCCCGGTTCATAGGCGGCTCCCAGGCCGTCCGGATGAACGCGCCGCGCGTCGGCGGAAGCTTCGCCGTCTGGGGAGGCCTGTTCTCCGCCTTCGACTGCACCATGGTCTACGTCCGCCAGAAGGAGGACCCCTGGAACTCCATCATCGCCGGCGCCGCCACCGGTGGCTTCCTCCAGATGCGCCAGGGGCTTGGCGCCTCGGCCCGATCGGCTGCCTTCGGTGGCGTTCTCCTGGCGCTGATTGAAGGAGCTGGGATCATGCTTAATAAGTTTATGAGCCAGCAGCAGCAGATGCCGGTTGTGATTGAAGAGCCGGCGAATATGGCCGGTATGCCTGGGCTTCCTCCTATGGGCCGGGCTCCGGGTCAGCCTGGCCCACCGGAGATGGCAACGTCCGTCGGCAGCGGCGCTGAGGCGAATTCGAGCTCAGGATCCTGGTTTGGAGGATGGTTCGAAAAGGGGAAGGAGCCTGAGGCTAAGAGAAGTGGAAGTGAGACGAAGATTTTGGAGAGTTTCGATGCACCGCCAGTGCCGACCTTCGAGTTTAAGTGA

Protein Analysis

229

Amino Acids

23.72

Weight (kDa)

5.52

Isoelectric Point (pI)

58.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 15 - 122 1.1e-30 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 62, 134, 287, 329
AccI GTMKAC 2 cut(s) 117, 243
AccII CGCG 3 cut(s) 176, 181, 183
AccIII TCCGGA 1 cut(s) 165
AclWI GGATC 3 cut(s) 398, 561, 574
AcoI YGGCCR 1 cut(s) 459
AcsI RAATTY 1 cut(s) 553
AcyI GRCGYC 5 cut(s) 63, 114, 135, 288, 330
AfiI CCNNNNNNNGG 6 cut(s) 138, 185, 256, 259, 485, 496
AgeI ACCGGT 1 cut(s) 296
AgsI TTSAA 2 cut(s) 380, 443
AjnI CCWGG 7 cut(s) 156, 266, 318, 366, 469, 505, 569
AluBI AGCT 3 cut(s) 195, 386, 561
AluI AGCT 3 cut(s) 195, 386, 561
Alw21I GWGCWC 1 cut(s) 563
Alw26I GTCTC 1 cut(s) 623
AlwI GGATC 3 cut(s) 398, 561, 574
Ama87I CYCGRG 1 cut(s) 21
Aor13HI TCCGGA 1 cut(s) 165
AoxI GGCC 6 cut(s) 159, 211, 336, 459, 487, 508
ApeKI GCWGC 4 cut(s) 347, 418, 421, 537
ApoI RAATTY 1 cut(s) 553
ArsI GACNNNNNNTTYG 2 cut(s) 622, 654
AsiGI ACCGGT 1 cut(s) 296
AspS9I GGNCC 4 cut(s) 262, 337, 487, 509
AsuC2I CCSGG 3 cut(s) 139, 491, 498
AsuII TTCGAA 1 cut(s) 588
AvaI CYCGRG 1 cut(s) 21
AvaII GGWCC 1 cut(s) 262
AxyI CCTNAGG 1 cut(s) 606
BaeGI GKGCMC 1 cut(s) 35
BamHI GGATCC 1 cut(s) 566
BanI GGYRCC 4 cut(s) 62, 134, 287, 329
BanII GRGCYC 2 cut(s) 496, 563
Bbv12I GWGCWC 1 cut(s) 563
BbvCI CCTCAGC 1 cut(s) 546
BbvI GCAGC 4 cut(s) 334, 430, 433, 549
BccI CCATC 3 cut(s) 284, 514, 576
BceAI ACGGC 2 cut(s) 146, 185
BcgI CGANNNNNNTGC 2 cut(s) 12, 46
BciT130I CCWGG 7 cut(s) 158, 268, 320, 368, 471, 507, 571
BcnI CCSGG 3 cut(s) 139, 491, 498
BcoDI GTCTC 1 cut(s) 623
BfoI RGCGCY 7 cut(s) 66, 81, 138, 291, 333, 374, 546
BglI GCCNNNNNGGC 1 cut(s) 344
BisI GCNGC 9 cut(s) 61, 151, 179, 291, 348, 419, 422, 538, 541
BlsI GCNGC 9 cut(s) 62, 152, 180, 292, 349, 420, 423, 539, 542
Bme18I GGWCC 1 cut(s) 262
BmeT110I CYCGRG 1 cut(s) 21
BmgT120I GGNCC 4 cut(s) 262, 337, 487, 509
BmsI GCATC 4 cut(s) 51, 303, 417, 643
BpmI CTGGAG 1 cut(s) 293
Bpu10I CCTNAGC 2 cut(s) 546, 562
Bpu14I TTCGAA 1 cut(s) 588
BpuMI CCSGG 3 cut(s) 139, 491, 498
BsaHI GRCGYC 5 cut(s) 63, 114, 135, 288, 330
BsaJI CCNNGG 6 cut(s) 156, 237, 266, 319, 333, 470
BsaWI WCCGGW 3 cut(s) 165, 296, 514
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 6 cut(s) 138, 185, 256, 259, 485, 496
Bse118I RCCGGY 5 cut(s) 284, 296, 430, 448, 461
Bse1I ACTGG 1 cut(s) 662
Bse21I CCTNAGG 1 cut(s) 606
BseAI TCCGGA 1 cut(s) 165
BseBI CCWGG 7 cut(s) 158, 268, 320, 368, 471, 507, 571
BseDI CCNNGG 6 cut(s) 156, 237, 266, 319, 333, 470
BseGI GGATG 4 cut(s) 17, 42, 174, 587
BseLI CCNNNNNNNGG 6 cut(s) 138, 185, 256, 259, 485, 496
BseMII CTCAG 3 cut(s) 537, 576, 597
BseNI ACTGG 1 cut(s) 662
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 4 cut(s) 334, 430, 433, 549
BseYI CCCAGC 1 cut(s) 386
BsgI GTGCAG 1 cut(s) 217
Bsh1236I CGCG 3 cut(s) 176, 181, 183
Bsh1285I CGRYCG 2 cut(s) 40, 344
BshFI GGCC 6 cut(s) 161, 213, 338, 461, 489, 510
BshNI GGYRCC 4 cut(s) 62, 134, 287, 329
BshTI ACCGGT 1 cut(s) 296
BsiEI CGRYCG 2 cut(s) 40, 344
BsiHKAI GWGCWC 1 cut(s) 563
BsiHKCI CYCGRG 1 cut(s) 21
BslI CCNNNNNNNGG 6 cut(s) 138, 185, 256, 259, 485, 496
BsmAI GTCTC 1 cut(s) 623
BsmBI CGTCTC 1 cut(s) 623
BsnI GGCC 6 cut(s) 161, 213, 338, 461, 489, 510
BsoBI CYCGRG 1 cut(s) 21
Bsp119I TTCGAA 1 cut(s) 588
Bsp1286I GDGCHC 3 cut(s) 35, 496, 563
Bsp13I TCCGGA 1 cut(s) 165
Bsp143I GATC 3 cut(s) 341, 390, 566
Bsp19I CCATGG 1 cut(s) 237
BspANI GGCC 6 cut(s) 161, 213, 338, 461, 489, 510
BspCNI CTCAG 3 cut(s) 538, 575, 598
BspEI TCCGGA 1 cut(s) 165
BspFNI CGCG 3 cut(s) 176, 181, 183
BspPI GGATC 3 cut(s) 398, 561, 574
BspQI GCTCTTC 1 cut(s) 438
BspT104I TTCGAA 1 cut(s) 588
BspT107I GGYRCC 4 cut(s) 62, 134, 287, 329
BsrFI RCCGGY 5 cut(s) 284, 296, 430, 448, 461
BsrI ACTGG 1 cut(s) 662
BssAI RCCGGY 5 cut(s) 284, 296, 430, 448, 461
BssECI CCNNGG 6 cut(s) 156, 237, 266, 319, 333, 470
BssMI GATC 3 cut(s) 341, 390, 566
BssNI GRCGYC 5 cut(s) 63, 114, 135, 288, 330
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 7 cut(s) 158, 268, 320, 368, 471, 507, 571
Bst4CI ACNGT 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 5 cut(s) 63, 114, 135, 288, 330
BstAPI GCANNNNNTGC 1 cut(s) 427
BstBI TTCGAA 1 cut(s) 588
BstC8I GCNNGC 3 cut(s) 286, 416, 450
BstDEI CTNAG 4 cut(s) 546, 562, 606, 612
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 4 cut(s) 17, 42, 174, 587
BstFNI CGCG 3 cut(s) 176, 181, 183
BstH2I RGCGCY 7 cut(s) 66, 81, 138, 291, 333, 374, 546
BstKTI GATC 3 cut(s) 344, 393, 569
BstMAI GTCTC 1 cut(s) 623
BstMBI GATC 3 cut(s) 341, 390, 566
BstMCI CGRYCG 2 cut(s) 40, 344
BstMWI GCNNNNNNNGC 8 cut(s) 39, 69, 84, 290, 322, 344, 427, 458
BstNI CCWGG 7 cut(s) 158, 268, 320, 368, 471, 507, 571
BstSLI GKGCMC 1 cut(s) 35
BstUI CGCG 3 cut(s) 176, 181, 183
BstV1I GCAGC 4 cut(s) 334, 430, 433, 549
BstX2I RGATCY 1 cut(s) 566
BstXI CCANNNNNNTGG 1 cut(s) 326
BstYI RGATCY 1 cut(s) 566
Bsu36I CCTNAGG 1 cut(s) 606
BsuRI GGCC 6 cut(s) 161, 213, 338, 461, 489, 510
BtgI CCRYGG 1 cut(s) 237
BtgZI GCGATG 1 cut(s) 265
BtsCI GGATG 4 cut(s) 17, 42, 174, 587
BtsIMutI CAGTG 1 cut(s) 669
Cac8I GCNNGC 3 cut(s) 286, 416, 450
Cfr10I RCCGGY 5 cut(s) 284, 296, 430, 448, 461
Cfr13I GGNCC 4 cut(s) 262, 337, 487, 509
CseI GACGC 2 cut(s) 103, 172
CspAI ACCGGT 1 cut(s) 296
CviAII CATG 3 cut(s) 73, 238, 394
DdeI CTNAG 4 cut(s) 546, 562, 606, 612
DinI GGCGCC 4 cut(s) 64, 136, 289, 331
DpnI GATC 3 cut(s) 343, 392, 568
DpnII GATC 3 cut(s) 341, 390, 566
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
EciI GGCGGA 4 cut(s) 82, 204, 211, 239
Ecl136II GAGCTC 1 cut(s) 561
Eco130I CCWWGG 1 cut(s) 237
Eco147I AGGCCT 1 cut(s) 213
Eco24I GRGCYC 2 cut(s) 496, 563
Eco47I GGWCC 1 cut(s) 262
Eco53kI GAGCTC 1 cut(s) 561
Eco81I CCTNAGG 1 cut(s) 606
Eco88I CYCGRG 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 561
EcoO109I RGGNCCY 1 cut(s) 262
EcoRI GAATTC 1 cut(s) 553
EcoRII CCWGG 7 cut(s) 156, 266, 318, 366, 469, 505, 569
EcoT14I CCWWGG 1 cut(s) 237
EcoT38I GRGCYC 2 cut(s) 496, 563
EgeI GGCGCC 4 cut(s) 64, 136, 289, 331
EheI GGCGCC 4 cut(s) 64, 136, 289, 331
ErhI CCWWGG 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 623
FaeI CATG 3 cut(s) 76, 241, 397
FaiI YATR 9 cut(s) 56, 74, 146, 239, 395, 410, 458, 467, 485
FatI CATG 3 cut(s) 72, 237, 393
FblI GTMKAC 2 cut(s) 117, 243
Fnu4HI GCNGC 9 cut(s) 61, 151, 179, 291, 348, 419, 422, 538, 541
FokI GGATG 4 cut(s) 4, 29, 181, 594
FriOI GRGCYC 2 cut(s) 496, 563
Fsp4HI GCNGC 9 cut(s) 61, 151, 179, 291, 348, 419, 422, 538, 541
GluI GCNGC 9 cut(s) 61, 151, 179, 291, 348, 419, 422, 538, 541
GsaI CCCAGC 1 cut(s) 390
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 7 cut(s) 66, 81, 138, 291, 333, 374, 546
HaeIII GGCC 6 cut(s) 161, 213, 338, 461, 489, 510
HgaI GACGC 2 cut(s) 103, 172
Hin1I GRCGYC 5 cut(s) 63, 114, 135, 288, 330
Hin1II CATG 3 cut(s) 76, 241, 397
HindIII AAGCTT 1 cut(s) 193
Hpy166II GTNNAC 2 cut(s) 118, 244
Hpy188III TCNNGA 5 cut(s) 11, 21, 166, 310, 564
Hpy8I GTNNAC 2 cut(s) 118, 244
Hpy99I CGWCG 3 cut(s) 53, 188, 536
HpyAV CCTTC 8 cut(s) 76, 106, 235, 250, 361, 374, 592, 682
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4IV ACGT 2 cut(s) 246, 527
HpyCH4V TGCA 2 cut(s) 234, 656
HpyF10VI GCNNNNNNNGC 8 cut(s) 39, 69, 84, 290, 322, 344, 427, 458
HpyF3I CTNAG 4 cut(s) 546, 562, 606, 612
HpySE526I ACGT 2 cut(s) 246, 527
Hsp92I GRCGYC 5 cut(s) 63, 114, 135, 288, 330
Hsp92II CATG 3 cut(s) 76, 241, 397
KasI GGCGCC 4 cut(s) 62, 134, 287, 329
Kpn2I TCCGGA 1 cut(s) 165
KroI GCCGGC 2 cut(s) 284, 448
KroNI GCCGGC 2 cut(s) 286, 450
Kzo9I GATC 3 cut(s) 341, 390, 566
LguI GCTCTTC 1 cut(s) 438
LmnI GCTCC 4 cut(s) 158, 383, 499, 601
Lsp1109I GCAGC 4 cut(s) 334, 430, 433, 549
LweI GCATC 4 cut(s) 51, 303, 417, 643
MaeII ACGT 2 cut(s) 246, 527
MalI GATC 3 cut(s) 343, 392, 568
MboI GATC 3 cut(s) 341, 390, 566
MboII GAAGA 2 cut(s) 455, 646
MflI RGATCY 1 cut(s) 566
MhlI GDGCHC 3 cut(s) 35, 496, 563
MluCI AATT 1 cut(s) 553
Mly113I GGCGCC 4 cut(s) 63, 135, 288, 330
MreI CGCCGGCG 1 cut(s) 284
MroI TCCGGA 1 cut(s) 165
MroNI GCCGGC 2 cut(s) 284, 448
MseI TTAA 2 cut(s) 399, 681
MspA1I CMGCKG 1 cut(s) 540
MteI GCGCNGCGC 1 cut(s) 179
MvaI CCWGG 7 cut(s) 158, 268, 320, 368, 471, 507, 571
MvnI CGCG 3 cut(s) 176, 181, 183
MwoI GCNNNNNNNGC 8 cut(s) 39, 69, 84, 290, 322, 344, 427, 458
NaeI GCCGGC 2 cut(s) 286, 450
NarI GGCGCC 4 cut(s) 63, 135, 288, 330
NciI CCSGG 3 cut(s) 139, 491, 498
NcoI CCATGG 1 cut(s) 237
NdeII GATC 3 cut(s) 341, 390, 566
NgoMIV GCCGGC 2 cut(s) 284, 448
NlaIII CATG 3 cut(s) 76, 241, 397
NmeAIII GCCGAG 1 cut(s) 314
NspV TTCGAA 1 cut(s) 588
PceI AGGCCT 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 438
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PdiI GCCGGC 2 cut(s) 286, 450
PinAI ACCGGT 1 cut(s) 296
PkrI GCNGC 9 cut(s) 62, 152, 180, 292, 349, 420, 423, 539, 542
Ple19I CGATCG 1 cut(s) 344
PluTI GGCGCC 4 cut(s) 66, 138, 291, 333
PpuMI RGGWCCY 1 cut(s) 262
Psp124BI GAGCTC 1 cut(s) 563
Psp5II RGGWCCY 1 cut(s) 262
Psp6I CCWGG 7 cut(s) 156, 266, 318, 366, 469, 505, 569
PspFI CCCAGC 1 cut(s) 386
PspGI CCWGG 7 cut(s) 156, 266, 318, 366, 469, 505, 569
PspPI GGNCC 4 cut(s) 262, 337, 487, 509
PspPPI RGGWCCY 1 cut(s) 262
PsuI RGATCY 1 cut(s) 566
PvuI CGATCG 1 cut(s) 344
SacI GAGCTC 1 cut(s) 563
SapI GCTCTTC 1 cut(s) 438
SaqAI TTAA 2 cut(s) 399, 681
SatI GCNGC 9 cut(s) 61, 151, 179, 291, 348, 419, 422, 538, 541
Sau3AI GATC 3 cut(s) 341, 390, 566
Sau96I GGNCC 4 cut(s) 262, 337, 487, 509
SduI GDGCHC 3 cut(s) 35, 496, 563
SetI ASST 6 cut(s) 197, 249, 388, 530, 563, 674
SfaNI GCATC 4 cut(s) 51, 303, 417, 643
SfoI GGCGCC 4 cut(s) 64, 136, 289, 331
SfuI TTCGAA 1 cut(s) 588
SgrAI CRCCGGYG 2 cut(s) 284, 296
SinI GGWCC 1 cut(s) 262
Sse9I AATT 1 cut(s) 553
SseBI AGGCCT 1 cut(s) 213
SspDI GGCGCC 4 cut(s) 62, 134, 287, 329
SstI GAGCTC 1 cut(s) 563
StuI AGGCCT 1 cut(s) 213
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 30
TaiI ACGT 2 cut(s) 249, 530
TaqI TCGA 6 cut(s) 48, 228, 557, 588, 651, 675
TasI AATT 1 cut(s) 553
TauI GCSGC 5 cut(s) 63, 153, 181, 293, 543
Tru1I TTAA 2 cut(s) 399, 681
Tru9I TTAA 2 cut(s) 399, 681
TscAI CASTG 1 cut(s) 669
TseI GCWGC 4 cut(s) 347, 418, 421, 537
TspDTI ATGAA 3 cut(s) 94, 133, 185
TspGWI ACGGA 1 cut(s) 520
TspRI CASTG 1 cut(s) 669
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 1 cut(s) 553
XmiI GTMKAC 2 cut(s) 117, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.