Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Reverse (-)

15245633 .. 15246672

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCGGCAGGGAATGGGCGCCACGGCGAGGTCCGCCACCATGGGAGGGGTGCTGCTGGCCCTGATCAAAGGCGCCGGGATCATGCTCAACAAGATGATGGAGAAGAAGCAGCAGATTCCGATGGAGGAACATGGTCTTGTTGGTCTGCCTGGGATGATGGGCGGCCCGGAGGAGCTCGTCGGGTTAGAAGAACCCGGTTCTTGGCTGGGAGGGTTGTTTGGGAAAGGGAAAGAGCCTGAGTCGGCCACCAGCGGAAGCGAGACCAAGGTTCTCGAGAGCTTCGATGCTCCTCCGGTGCCCAATTTTGATTACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

106

Amino Acids

11.04

Weight (kDa)

5.12

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	17, 71, 295
AciI	CCGC	4 cut(s)	4, 33, 162, 252
AclWI	GGATC	1 cut(s)	86
AcoI	YGGCCR	1 cut(s)	243
AcyI	GRCGYC	2 cut(s)	18, 72
AfiI	CCNNNNNNNGG	3 cut(s)	27, 45, 201
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	2 cut(s)	175, 279
AluI	AGCT	2 cut(s)	175, 279
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	86
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	3 cut(s)	57, 163, 243
ApeKI	GCWGC	2 cut(s)	52, 109
AspLEI	GCGC	2 cut(s)	20, 74
AspS9I	GGNCC	3 cut(s)	30, 58, 164
AsuC2I	CCSGG	3 cut(s)	76, 167, 195
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	30
BaeGI	GKGCMC	1 cut(s)	300
BanI	GGYRCC	3 cut(s)	17, 71, 295
BanII	GRGCYC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	39, 121
BccI	CCATC	3 cut(s)	91, 115, 151
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	150
BclI	TGATCA	1 cut(s)	63
BcnI	CCSGG	3 cut(s)	76, 167, 195
BcoDI	GTCTC	1 cut(s)	254
BfoI	RGCGCY	2 cut(s)	21, 75
BisI	GCNGC	4 cut(s)	5, 53, 110, 163
BlsI	GCNGC	4 cut(s)	6, 54, 111, 164
Bme1390I	CCNGG	4 cut(s)	76, 150, 167, 195
Bme18I	GGWCC	1 cut(s)	30
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	3 cut(s)	30, 58, 164
BmiI	GGNNCC	3 cut(s)	19, 73, 297
BmrFI	CCNGG	4 cut(s)	76, 150, 167, 195
BmsI	GCATC	1 cut(s)	274
BpuMI	CCSGG	3 cut(s)	76, 167, 195
BsaHI	GRCGYC	2 cut(s)	18, 72
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	4 cut(s)	21, 39, 149, 264
BsaWI	WCCGGW	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 45, 201
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	4 cut(s)	21, 39, 149, 264
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	3 cut(s)	27, 45, 201
BseMII	CTCAG	1 cut(s)	228
BseRI	GAGGAG	2 cut(s)	185, 279
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	2 cut(s)	39, 121
BseYI	CCCAGC	1 cut(s)	205
BshFI	GGCC	3 cut(s)	59, 165, 245
BshNI	GGYRCC	3 cut(s)	17, 71, 295
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	4 cut(s)	75, 167, 195, 293
BslI	CCNNNNNNNGG	3 cut(s)	27, 45, 201
BsmAI	GTCTC	1 cut(s)	254
BsnI	GGCC	3 cut(s)	59, 165, 245
Bso31I	GGTCTC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	2 cut(s)	177, 300
Bsp143I	GATC	2 cut(s)	63, 78
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	4 cut(s)	4, 33, 162, 252
BspANI	GGCC	3 cut(s)	59, 165, 245
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	3 cut(s)	19, 73, 297
BspPI	GGATC	1 cut(s)	86
BspT107I	GGYRCC	3 cut(s)	17, 71, 295
BspTNI	GGTCTC	1 cut(s)	254
BssECI	CCNNGG	4 cut(s)	21, 39, 149, 264
BssMI	GATC	2 cut(s)	63, 78
BssNI	GRCGYC	2 cut(s)	18, 72
BssT1I	CCWWGG	2 cut(s)	39, 264
Bst2UI	CCWGG	1 cut(s)	150
BstACI	GRCGYC	2 cut(s)	18, 72
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	237
BstDSI	CCRYGG	2 cut(s)	21, 39
BstF5I	GGATG	1 cut(s)	159
BstH2I	RGCGCY	2 cut(s)	21, 75
BstHHI	GCGC	2 cut(s)	20, 74
BstKTI	GATC	2 cut(s)	66, 81
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	2 cut(s)	63, 78
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	4 cut(s)	74, 148, 165, 193
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	39, 121
BsuRI	GGCC	3 cut(s)	59, 165, 245
BtgI	CCRYGG	2 cut(s)	21, 39
BtsCI	GGATG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	2 cut(s)	20, 74
Cfr13I	GGNCC	3 cut(s)	30, 58, 164
CviAII	CATG	3 cut(s)	40, 82, 131
CviJI	RGCY	7 cut(s)	59, 165, 175, 205, 235, 245, 279
CviKI_1	RGCY	7 cut(s)	59, 165, 175, 205, 235, 245, 279
DdeI	CTNAG	1 cut(s)	237
DinI	GGCGCC	2 cut(s)	19, 73
DpnI	GATC	2 cut(s)	65, 80
DpnII	GATC	2 cut(s)	63, 78
EaeI	YGGCCR	1 cut(s)	243
EciI	GGCGGA	1 cut(s)	22
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	2 cut(s)	39, 264
Eco24I	GRGCYC	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	2 cut(s)	39, 264
EcoT38I	GRGCYC	1 cut(s)	177
EgeI	GGCGCC	2 cut(s)	19, 73
EheI	GGCGCC	2 cut(s)	19, 73
ErhI	CCWWGG	2 cut(s)	39, 264
FaeI	CATG	3 cut(s)	43, 85, 134
FaiI	YATR	3 cut(s)	41, 83, 132
FatI	CATG	3 cut(s)	39, 81, 130
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	4 cut(s)	5, 53, 110, 163
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	4 cut(s)	5, 53, 110, 163
GlaI	GCGC	2 cut(s)	19, 73
GluI	GCNGC	4 cut(s)	5, 53, 110, 163
GsaI	CCCAGC	1 cut(s)	209
HaeII	RGCGCY	2 cut(s)	21, 75
HaeIII	GGCC	3 cut(s)	59, 165, 245
HapII	CCGG	4 cut(s)	75, 167, 195, 293
HhaI	GCGC	2 cut(s)	20, 74
Hin1I	GRCGYC	2 cut(s)	18, 72
Hin1II	CATG	3 cut(s)	43, 85, 134
Hin6I	GCGC	2 cut(s)	18, 72
HinP1I	GCGC	2 cut(s)	18, 72
HinfI	GANTC	2 cut(s)	115, 239
HpaII	CCGG	4 cut(s)	75, 167, 195, 293
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	2 cut(s)	272, 274
Hpy99I	CGWCG	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	237
Hsp92I	GRCGYC	2 cut(s)	18, 72
Hsp92II	CATG	3 cut(s)	43, 85, 134
HspAI	GCGC	2 cut(s)	18, 72
KasI	GGCGCC	2 cut(s)	17, 71
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	63, 78
LmnI	GCTCC	2 cut(s)	172, 292
Lsp1109I	GCAGC	2 cut(s)	39, 121
LweI	GCATC	1 cut(s)	274
MalI	GATC	2 cut(s)	65, 80
MboI	GATC	2 cut(s)	63, 78
MboII	GAAGA	2 cut(s)	115, 200
MhlI	GDGCHC	2 cut(s)	177, 300
MluCI	AATT	1 cut(s)	301
Mly113I	GGCGCC	2 cut(s)	18, 72
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	6 cut(s)	21, 38, 118, 163, 203, 300
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	4 cut(s)	75, 167, 195, 293
MspR9I	CCNGG	4 cut(s)	76, 150, 167, 195
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	32
NarI	GGCGCC	2 cut(s)	18, 72
NciI	CCSGG	3 cut(s)	76, 167, 195
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	2 cut(s)	63, 78
NlaIII	CATG	3 cut(s)	43, 85, 134
NlaIV	GGNNCC	3 cut(s)	19, 73, 297
PaeR7I	CTCGAG	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	4 cut(s)	6, 54, 111, 164
PleI	GAGTC	1 cut(s)	247
PluTI	GGCGCC	2 cut(s)	21, 75
PpsI	GAGTC	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	19, 73, 297
PspPI	GGNCC	3 cut(s)	30, 58, 164
SacI	GAGCTC	1 cut(s)	177
SatI	GCNGC	4 cut(s)	5, 53, 110, 163
Sau3AI	GATC	2 cut(s)	63, 78
Sau96I	GGNCC	3 cut(s)	30, 58, 164
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	4 cut(s)	76, 150, 167, 195
SduI	GDGCHC	2 cut(s)	177, 300
SetI	ASST	4 cut(s)	32, 177, 270, 281
SfaNI	GCATC	1 cut(s)	274
SfoI	GGCGCC	2 cut(s)	19, 73
Sfr274I	CTCGAG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	30
SlaI	CTCGAG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	1 cut(s)	301
SsiI	CCGC	4 cut(s)	4, 33, 162, 252
SspDI	GGCGCC	2 cut(s)	17, 71
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	4 cut(s)	74, 148, 165, 193
StyI	CCWWGG	2 cut(s)	39, 264
TaqI	TCGA	2 cut(s)	273, 282
TasI	AATT	1 cut(s)	301
TauI	GCSGC	2 cut(s)	7, 165
TfiI	GAWTC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	52, 109
VpaK11BI	GGWCC	1 cut(s)	30
XhoI	CTCGAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.