MD02G1065800.v1.1

Mitochondrial import inner membrane translocase subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
5331299 .. 5333494
2196 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1065800.v1.1.491

Sequence Viewer

Length: 855 bp
ATGGGGACTCCAGAAACATCCCGGGAACCGTGCCCCGACCGCATCCTTGACGACATCGGCGGTGCCTTCGGCATGGGTGCTGTCGGTGGGTCCGCCTTCCACTTCCTCAAGGGCGTCTACCACTCCCCATCCGGCTCCCGGTTCATCGGCGGATCCCAGGCCGTCCGGATGAACGCACCGCGCGTTGGCGGGAGCTTCGCCGTCTGGGGAGGCCTTTTCTCCGCCTTCGACTGCACCATGGTCTACGTCCGCCAGAAGGAGGACCCCTGGAACTCCATCATCGCCGGCGCCGCCACCGGTGGCTTCCTCCAGATGCGCCAGGGGCTTGGCGCCTCGGCCCGATCGGCCGCCTTCGGTGGCGTTCTCTTAGCGCTGATTGAAGGAGCTGGGATCATGCTTAATAAGTTTATGAGCCAACAGCAGCAGATGCCAGTTGTTATTGAAGAACCGGCGAATATGCCCGGTGTGCCTGGTCTTCCTCCGATGGGCCGGGCTCCAGGTCAGCCAGGCCCACCGGAGATGGCAACGTCTGTTAGCGGCGGCTCTGAGGCGAATTCGAGCTCAGGATCGTGGTTTGGAGGGCTGTTTGGAAAGGGTAATGAGCCTGAGGCTAAGAGCAGCGGAAGCGAGACGAAGGTTTTGGAGAGTTTCGATGCACCGCCAGTTCCAACCTTCGAGTTTAAGATTTGCATGCTGGCCTTGTGGACAAAGAGCCTAAGACAGCTATCCAATTTTCAGTTTTGTTTCGAGGCGCTTGAAGAGCAGTACATAGTAGAGACACGAAGCTCGCAACACCCATGTCGAAAGAAGATGGCGCAGCGGAATATGAATCGTGCAGCGCCAGGACTTTCTTGA

Protein Analysis

285

Amino Acids

30.07

Weight (kDa)

7.64

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 15 - 122 2.8e-30 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 62, 287, 329
AccI GTMKAC 2 cut(s) 117, 243
AccII CGCG 2 cut(s) 181, 183
AccIII TCCGGA 1 cut(s) 165
AclWI GGATC 4 cut(s) 147, 160, 398, 574
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 1 cut(s) 553
AcyI GRCGYC 3 cut(s) 114, 288, 330
AfaI GTAC 1 cut(s) 767
AfeI AGCGCT 1 cut(s) 372
AfiI CCNNNNNNNGG 5 cut(s) 138, 185, 256, 259, 485
AgeI ACCGGT 1 cut(s) 296
AgsI TTSAA 3 cut(s) 380, 443, 758
AjnI CCWGG 7 cut(s) 156, 266, 318, 469, 496, 505, 841
AluBI AGCT 5 cut(s) 195, 386, 561, 724, 786
AluI AGCT 5 cut(s) 195, 386, 561, 724, 786
Alw21I GWGCWC 1 cut(s) 563
Alw26I GTCTC 2 cut(s) 623, 770
AlwI GGATC 4 cut(s) 147, 160, 398, 574
Ama87I CYCGRG 1 cut(s) 21
Aor13HI TCCGGA 1 cut(s) 165
Aor51HI AGCGCT 1 cut(s) 372
AoxI GGCC 7 cut(s) 159, 211, 336, 345, 487, 508, 696
ApeKI GCWGC 4 cut(s) 421, 618, 817, 836
ApoI RAATTY 1 cut(s) 553
ArsI GACNNNNNNTTYG 2 cut(s) 622, 654
AsiGI ACCGGT 1 cut(s) 296
AspLEI GCGC 8 cut(s) 183, 290, 318, 332, 373, 754, 817, 841
AspS9I GGNCC 5 cut(s) 90, 262, 337, 487, 509
AsuC2I CCSGG 5 cut(s) 22, 23, 139, 462, 491
AvaI CYCGRG 1 cut(s) 21
AvaII GGWCC 2 cut(s) 90, 262
AxyI CCTNAGG 1 cut(s) 606
BaeGI GKGCMC 1 cut(s) 35
BamHI GGATCC 1 cut(s) 152
BanI GGYRCC 3 cut(s) 62, 287, 329
BanII GRGCYC 2 cut(s) 496, 563
BbsI GAAGAC 1 cut(s) 467
Bbv12I GWGCWC 1 cut(s) 563
BbvI GCAGC 4 cut(s) 433, 630, 829, 848
BccI CCATC 5 cut(s) 136, 284, 478, 514, 805
BceAI ACGGC 2 cut(s) 146, 185
BciT130I CCWGG 7 cut(s) 158, 268, 320, 471, 498, 507, 843
BcnI CCSGG 5 cut(s) 22, 23, 139, 462, 491
BcoDI GTCTC 2 cut(s) 623, 770
BfoI RGCGCY 5 cut(s) 291, 333, 374, 755, 842
BglI GCCNNNNNGGC 1 cut(s) 344
BisI GCNGC 8 cut(s) 291, 348, 422, 538, 541, 619, 818, 837
BlsI GCNGC 8 cut(s) 292, 349, 423, 539, 542, 620, 819, 838
Bme18I GGWCC 2 cut(s) 90, 262
BmeT110I CYCGRG 1 cut(s) 21
BmgT120I GGNCC 5 cut(s) 90, 262, 337, 487, 509
BmiI GGNNCC 9 cut(s) 27, 64, 91, 136, 154, 264, 289, 331, 495
BmsI GCATC 4 cut(s) 51, 303, 417, 643
BpiI GAAGAC 1 cut(s) 467
BpmI CTGGAG 2 cut(s) 293, 480
Bpu10I CCTNAGC 1 cut(s) 562
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 5 cut(s) 22, 23, 139, 462, 491
BsaHI GRCGYC 3 cut(s) 114, 288, 330
BsaJI CCNNGG 6 cut(s) 21, 156, 237, 266, 319, 333
BsaWI WCCGGW 3 cut(s) 165, 296, 514
Bsc4I CCNNNNNNNGG 5 cut(s) 138, 185, 256, 259, 485
Bse118I RCCGGY 3 cut(s) 284, 296, 448
Bse1I ACTGG 2 cut(s) 431, 662
Bse21I CCTNAGG 1 cut(s) 606
BseAI TCCGGA 1 cut(s) 165
BseBI CCWGG 7 cut(s) 158, 268, 320, 471, 498, 507, 843
BseDI CCNNGG 6 cut(s) 21, 156, 237, 266, 319, 333
BseGI GGATG 4 cut(s) 17, 42, 128, 174
BseLI CCNNNNNNNGG 5 cut(s) 138, 185, 256, 259, 485
BseMII CTCAG 3 cut(s) 537, 576, 597
BseNI ACTGG 2 cut(s) 431, 662
BseSI GKGCMC 1 cut(s) 35
BseX3I CGGCCG 1 cut(s) 345
BseXI GCAGC 4 cut(s) 433, 630, 829, 848
BseYI CCCAGC 1 cut(s) 386
BsgI GTGCAG 2 cut(s) 217, 855
Bsh1236I CGCG 2 cut(s) 181, 183
Bsh1285I CGRYCG 3 cut(s) 40, 344, 348
BshFI GGCC 7 cut(s) 161, 213, 338, 347, 489, 510, 698
BshNI GGYRCC 3 cut(s) 62, 287, 329
BshTI ACCGGT 1 cut(s) 296
BsiEI CGRYCG 3 cut(s) 40, 344, 348
BsiHKAI GWGCWC 1 cut(s) 563
BsiHKCI CYCGRG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 5 cut(s) 138, 185, 256, 259, 485
BsmAI GTCTC 2 cut(s) 623, 770
BsmBI CGTCTC 1 cut(s) 623
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 7 cut(s) 161, 213, 338, 347, 489, 510, 698
BsoBI CYCGRG 1 cut(s) 21
Bsp1286I GDGCHC 3 cut(s) 35, 496, 563
Bsp13I TCCGGA 1 cut(s) 165
Bsp143I GATC 4 cut(s) 152, 341, 390, 566
Bsp19I CCATGG 1 cut(s) 237
BspANI GGCC 7 cut(s) 161, 213, 338, 347, 489, 510, 698
BspCNI CTCAG 3 cut(s) 538, 575, 598
BspEI TCCGGA 1 cut(s) 165
BspFNI CGCG 2 cut(s) 181, 183
BspLI GGNNCC 9 cut(s) 27, 64, 91, 136, 154, 264, 289, 331, 495
BspPI GGATC 4 cut(s) 147, 160, 398, 574
BspQI GCTCTTC 1 cut(s) 753
BspT107I GGYRCC 3 cut(s) 62, 287, 329
BsrFI RCCGGY 3 cut(s) 284, 296, 448
BsrI ACTGG 2 cut(s) 431, 662
BssAI RCCGGY 3 cut(s) 284, 296, 448
BssECI CCNNGG 6 cut(s) 21, 156, 237, 266, 319, 333
BssMI GATC 4 cut(s) 152, 341, 390, 566
BssNI GRCGYC 3 cut(s) 114, 288, 330
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 7 cut(s) 158, 268, 320, 471, 498, 507, 843
Bst4CI ACNGT 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 753
BstACI GRCGYC 3 cut(s) 114, 288, 330
BstAPI GCANNNNNTGC 1 cut(s) 427
BstC8I GCNNGC 4 cut(s) 286, 692, 696, 788
BstDEI CTNAG 6 cut(s) 367, 546, 562, 606, 612, 716
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 4 cut(s) 17, 42, 128, 174
BstFNI CGCG 2 cut(s) 181, 183
BstH2I RGCGCY 5 cut(s) 291, 333, 374, 755, 842
BstHHI GCGC 8 cut(s) 183, 290, 318, 332, 373, 754, 817, 841
BstKTI GATC 4 cut(s) 155, 344, 393, 569
BstMAI GTCTC 2 cut(s) 623, 770
BstMBI GATC 4 cut(s) 152, 341, 390, 566
BstMCI CGRYCG 3 cut(s) 40, 344, 348
BstMWI GCNNNNNNNGC 8 cut(s) 39, 290, 322, 344, 427, 466, 624, 760
BstNI CCWGG 7 cut(s) 158, 268, 320, 471, 498, 507, 843
BstNSI RCATGY 1 cut(s) 694
BstSLI GKGCMC 1 cut(s) 35
BstUI CGCG 2 cut(s) 181, 183
BstV1I GCAGC 4 cut(s) 433, 630, 829, 848
BstV2I GAAGAC 1 cut(s) 467
BstX2I RGATCY 1 cut(s) 152
BstXI CCANNNNNNTGG 1 cut(s) 326
BstYI RGATCY 1 cut(s) 152
BstZI CGGCCG 1 cut(s) 345
Bsu36I CCTNAGG 1 cut(s) 606
BsuRI GGCC 7 cut(s) 161, 213, 338, 347, 489, 510, 698
BtgI CCRYGG 1 cut(s) 237
BtgZI GCGATG 1 cut(s) 265
BtsCI GGATG 4 cut(s) 17, 42, 128, 174
Cac8I GCNNGC 4 cut(s) 286, 692, 696, 788
CfoI GCGC 8 cut(s) 183, 290, 318, 332, 373, 754, 817, 841
Cfr10I RCCGGY 3 cut(s) 284, 296, 448
Cfr13I GGNCC 5 cut(s) 90, 262, 337, 487, 509
Cfr9I CCCGGG 1 cut(s) 21
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 766
CspAI ACCGGT 1 cut(s) 296
CviAII CATG 5 cut(s) 73, 238, 394, 691, 798
CviQI GTAC 1 cut(s) 766
DdeI CTNAG 6 cut(s) 367, 546, 562, 606, 612, 716
DinI GGCGCC 2 cut(s) 289, 331
DpnI GATC 4 cut(s) 154, 343, 392, 568
DpnII GATC 4 cut(s) 152, 341, 390, 566
EaeI YGGCCR 1 cut(s) 345
EagI CGGCCG 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 753
EarI CTCTTC 1 cut(s) 753
EciI GGCGGA 4 cut(s) 82, 165, 211, 239
Ecl136II GAGCTC 1 cut(s) 561
EclXI CGGCCG 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 237
Eco147I AGGCCT 1 cut(s) 213
Eco24I GRGCYC 2 cut(s) 496, 563
Eco47I GGWCC 2 cut(s) 90, 262
Eco47III AGCGCT 1 cut(s) 372
Eco52I CGGCCG 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 561
Eco81I CCTNAGG 1 cut(s) 606
Eco88I CYCGRG 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 561
EcoO109I RGGNCCY 1 cut(s) 262
EcoRI GAATTC 1 cut(s) 553
EcoRII CCWGG 7 cut(s) 156, 266, 318, 469, 496, 505, 841
EcoT14I CCWWGG 1 cut(s) 237
EcoT38I GRGCYC 2 cut(s) 496, 563
EgeI GGCGCC 2 cut(s) 289, 331
EheI GGCGCC 2 cut(s) 289, 331
ErhI CCWWGG 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 623
FaeI CATG 5 cut(s) 76, 241, 397, 694, 801
FaiI YATR 9 cut(s) 74, 239, 395, 410, 458, 692, 770, 799, 827
FaqI GGGAC 1 cut(s) 19
FatI CATG 5 cut(s) 72, 237, 393, 690, 797
FauI CCCGC 1 cut(s) 182
FblI GTMKAC 2 cut(s) 117, 243
Fnu4HI GCNGC 8 cut(s) 291, 348, 422, 538, 541, 619, 818, 837
FokI GGATG 4 cut(s) 4, 29, 115, 181
FriOI GRGCYC 2 cut(s) 496, 563
Fsp4HI GCNGC 8 cut(s) 291, 348, 422, 538, 541, 619, 818, 837
GlaI GCGC 8 cut(s) 182, 289, 317, 331, 372, 753, 816, 840
GluI GCNGC 8 cut(s) 291, 348, 422, 538, 541, 619, 818, 837
GsaI CCCAGC 1 cut(s) 390
GsuI CTGGAG 2 cut(s) 293, 480
HaeII RGCGCY 5 cut(s) 291, 333, 374, 755, 842
HaeIII GGCC 7 cut(s) 161, 213, 338, 347, 489, 510, 698
HgaI GACGC 1 cut(s) 103
HhaI GCGC 8 cut(s) 183, 290, 318, 332, 373, 754, 817, 841
Hin1I GRCGYC 3 cut(s) 114, 288, 330
Hin1II CATG 5 cut(s) 76, 241, 397, 694, 801
Hin6I GCGC 8 cut(s) 181, 288, 316, 330, 371, 752, 815, 839
HinP1I GCGC 8 cut(s) 181, 288, 316, 330, 371, 752, 815, 839
HinfI GANTC 2 cut(s) 7, 829
Hpy166II GTNNAC 3 cut(s) 118, 244, 705
Hpy188I TCNGA 2 cut(s) 483, 547
Hpy188III TCNNGA 5 cut(s) 11, 166, 310, 564, 852
Hpy8I GTNNAC 3 cut(s) 118, 244, 705
HpyAV CCTTC 8 cut(s) 76, 106, 235, 250, 361, 374, 628, 682
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4IV ACGT 2 cut(s) 246, 527
HpyCH4V TGCA 4 cut(s) 234, 656, 690, 836
HpyF10VI GCNNNNNNNGC 8 cut(s) 39, 290, 322, 344, 427, 466, 624, 760
HpyF3I CTNAG 6 cut(s) 367, 546, 562, 606, 612, 716
HpySE526I ACGT 2 cut(s) 246, 527
Hsp92I GRCGYC 3 cut(s) 114, 288, 330
Hsp92II CATG 5 cut(s) 76, 241, 397, 694, 801
HspAI GCGC 8 cut(s) 181, 288, 316, 330, 371, 752, 815, 839
KasI GGCGCC 2 cut(s) 287, 329
Kpn2I TCCGGA 1 cut(s) 165
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
Kzo9I GATC 4 cut(s) 152, 341, 390, 566
LguI GCTCTTC 1 cut(s) 753
LmnI GCTCC 4 cut(s) 140, 192, 383, 499
Lsp1109I GCAGC 4 cut(s) 433, 630, 829, 848
LweI GCATC 4 cut(s) 51, 303, 417, 643
MaeII ACGT 2 cut(s) 246, 527
MalI GATC 4 cut(s) 154, 343, 392, 568
MboI GATC 4 cut(s) 152, 341, 390, 566
MboII GAAGA 4 cut(s) 455, 467, 770, 820
MflI RGATCY 1 cut(s) 152
MhlI GDGCHC 3 cut(s) 35, 496, 563
MluCI AATT 2 cut(s) 553, 730
Mly113I GGCGCC 2 cut(s) 288, 330
MmeI TCCRAC 1 cut(s) 692
MreI CGCCGGCG 1 cut(s) 284
MroI TCCGGA 1 cut(s) 165
MroNI GCCGGC 1 cut(s) 284
MseI TTAA 2 cut(s) 399, 681
MspA1I CMGCKG 2 cut(s) 621, 820
MvaI CCWGG 7 cut(s) 158, 268, 320, 471, 498, 507, 843
MvnI CGCG 2 cut(s) 181, 183
MwoI GCNNNNNNNGC 8 cut(s) 39, 290, 322, 344, 427, 466, 624, 760
NaeI GCCGGC 1 cut(s) 286
NarI GGCGCC 2 cut(s) 288, 330
NciI CCSGG 5 cut(s) 22, 23, 139, 462, 491
NcoI CCATGG 1 cut(s) 237
NdeII GATC 4 cut(s) 152, 341, 390, 566
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 5 cut(s) 76, 241, 397, 694, 801
NlaIV GGNNCC 9 cut(s) 27, 64, 91, 136, 154, 264, 289, 331, 495
NmeAIII GCCGAG 1 cut(s) 314
NspI RCATGY 1 cut(s) 694
PaeI GCATGC 1 cut(s) 694
PceI AGGCCT 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 753
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PdiI GCCGGC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 829
PinAI ACCGGT 1 cut(s) 296
PkrI GCNGC 8 cut(s) 292, 349, 423, 539, 542, 620, 819, 838
Ple19I CGATCG 1 cut(s) 344
PluTI GGCGCC 2 cut(s) 291, 333
PpuMI RGGWCCY 1 cut(s) 262
Psp124BI GAGCTC 1 cut(s) 563
Psp5II RGGWCCY 1 cut(s) 262
Psp6I CCWGG 7 cut(s) 156, 266, 318, 469, 496, 505, 841
PspFI CCCAGC 1 cut(s) 386
PspGI CCWGG 7 cut(s) 156, 266, 318, 469, 496, 505, 841
PspN4I GGNNCC 9 cut(s) 27, 64, 91, 136, 154, 264, 289, 331, 495
PspPI GGNCC 5 cut(s) 90, 262, 337, 487, 509
PspPPI RGGWCCY 1 cut(s) 262
PsuI RGATCY 1 cut(s) 152
PvuI CGATCG 1 cut(s) 344
RsaI GTAC 1 cut(s) 767
RsaNI GTAC 1 cut(s) 766
SacI GAGCTC 1 cut(s) 563
SapI GCTCTTC 1 cut(s) 753
SaqAI TTAA 2 cut(s) 399, 681
SatI GCNGC 8 cut(s) 291, 348, 422, 538, 541, 619, 818, 837
Sau3AI GATC 4 cut(s) 152, 341, 390, 566
Sau96I GGNCC 5 cut(s) 90, 262, 337, 487, 509
SduI GDGCHC 3 cut(s) 35, 496, 563
SfaNI GCATC 4 cut(s) 51, 303, 417, 643
SfiI GGCCNNNNNGGCC 1 cut(s) 344
SfoI GGCGCC 2 cut(s) 289, 331
SgrAI CRCCGGYG 2 cut(s) 284, 296
SinI GGWCC 2 cut(s) 90, 262
SmaI CCCGGG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SphI GCATGC 1 cut(s) 694
Sse9I AATT 2 cut(s) 553, 730
SseBI AGGCCT 1 cut(s) 213
SspDI GGCGCC 2 cut(s) 287, 329
SstI GAGCTC 1 cut(s) 563
StuI AGGCCT 1 cut(s) 213
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 30
TaiI ACGT 2 cut(s) 249, 530
TaqI TCGA 6 cut(s) 228, 557, 651, 675, 747, 802
TasI AATT 2 cut(s) 553, 730
TatI WGTACW 1 cut(s) 765
TauI GCSGC 4 cut(s) 293, 350, 540, 543
TfiI GAWTC 1 cut(s) 829
Tru1I TTAA 2 cut(s) 399, 681
Tru9I TTAA 2 cut(s) 399, 681
TseI GCWGC 4 cut(s) 421, 618, 817, 836
TspDTI ATGAA 3 cut(s) 133, 185, 842
TspMI CCCGGG 1 cut(s) 21
VpaK11BI GGWCC 2 cut(s) 90, 262
XapI RAATTY 1 cut(s) 553
XceI RCATGY 1 cut(s) 694
XmaI CCCGGG 1 cut(s) 21
XmiI GTMKAC 2 cut(s) 117, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.