RLG00000033645

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001914
Physical Location & Seq
Forward (+)
30150466 .. 30152259
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033645

Sequence Viewer

Length: 402 bp
ATGGCTTACCACGAATCCCAGCGACTCAATCCGAGACAGAACAGCCACGGGCAGCGGAGCTCCGGTGGTCATGATCTAGTTTCAGCTCGGTTCGGTGAATACGTAGCTGCATGCAGAAAGGCTTCGGCTTTTGGTACTGAGGCTACTGCTGCACGTAGGAAGGATGAAGTTGTTGGTACAGAGGCTGTGGCTGGTGAAAGGATGGTTAATAGTGCTCGTAGCAAGGCTGCAACGTCGTCTGTTGGTAAGAATGTTGTTGTTGCTGGTAGAAAGGTTGTTGTGGTTGCTGCTGCTGCATACAAGGCACATTTGGTAACGATGGTCCAACTTGAGTATGAAGATGAGGCACCTGACCAGGTGTCACACAATGAACGCAACTCGGATAGGTCCCAAATCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.35

Weight (kDa)

9.2

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 346
AciI CCGC 1 cut(s) 55
AfaI GTAC 2 cut(s) 136, 178
AhdI GACNNNNNGTC 1 cut(s) 358
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 3 cut(s) 60, 86, 107
AluI AGCT 3 cut(s) 60, 86, 107
Alw21I GWGCWC 2 cut(s) 62, 217
Alw26I GTCTC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 185
ApeKI GCWGC 7 cut(s) 52, 107, 149, 227, 287, 290, 293
Asp700I GAANNNNTTC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 322, 387
AsuHPI GGTGA 2 cut(s) 107, 206
AvaII GGWCC 2 cut(s) 322, 387
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 1 cut(s) 62
Bbv12I GWGCWC 2 cut(s) 62, 217
BbvI GCAGC 7 cut(s) 64, 94, 136, 214, 274, 277, 280
BccI CCATC 2 cut(s) 196, 313
BciT130I CCWGG 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 1 cut(s) 77
BisI GCNGC 7 cut(s) 53, 108, 150, 228, 288, 291, 294
BlsI GCNGC 7 cut(s) 54, 109, 151, 229, 289, 292, 295
Bme1390I CCNGG 1 cut(s) 356
Bme18I GGWCC 2 cut(s) 322, 387
BmeRI GACNNNNNGTC 1 cut(s) 358
BmgT120I GGNCC 2 cut(s) 322, 387
BmiI GGNNCC 2 cut(s) 348, 389
BmrFI CCNGG 1 cut(s) 356
BpuEI CTTGAG 1 cut(s) 350
BsaAI YACGTR 2 cut(s) 103, 155
BsaJI CCNNGG 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 2 cut(s) 169, 207
BseMII CTCAG 1 cut(s) 129
BseXI GCAGC 7 cut(s) 64, 94, 136, 214, 274, 277, 280
BseYI CCCAGC 1 cut(s) 18
BsgI GTGCAG 1 cut(s) 135
BshNI GGYRCC 1 cut(s) 346
BsiHKAI GWGCWC 2 cut(s) 62, 217
BsiSI CCGG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 373
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 373
Bsp1286I GDGCHC 2 cut(s) 62, 217
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 1 cut(s) 55
BspCNI CTCAG 1 cut(s) 130
BspHI TCATGA 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 348, 389
BspT107I GGYRCC 1 cut(s) 346
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 356
BstBAI YACGTR 2 cut(s) 103, 155
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 138
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 2 cut(s) 169, 207
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 3 cut(s) 149, 293, 302
BstNI CCWGG 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 354
BstSNI TACGTA 1 cut(s) 103
BstV1I GCAGC 7 cut(s) 64, 94, 136, 214, 274, 277, 280
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 2 cut(s) 169, 207
Cac8I GCNNGC 1 cut(s) 112
CaiI CAGNNNCTG 1 cut(s) 185
CciI TCATGA 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 322, 387
CsiI ACCWGGT 1 cut(s) 354
Csp6I GTAC 2 cut(s) 135, 177
CviAII CATG 2 cut(s) 71, 111
CviQI GTAC 2 cut(s) 135, 177
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
DriI GACNNNNNGTC 1 cut(s) 358
Eam1105I GACNNNNNGTC 1 cut(s) 358
Ecl136II GAGCTC 1 cut(s) 60
Eco105I TACGTA 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 62
Eco47I GGWCC 2 cut(s) 322, 387
Eco53kI GAGCTC 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 60
EcoO109I RGGNCCY 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 354
EcoT38I GRGCYC 1 cut(s) 62
FaeI CATG 2 cut(s) 74, 114
FaiI YATR 4 cut(s) 72, 112, 298, 336
FaqI GGGAC 1 cut(s) 373
FatI CATG 2 cut(s) 70, 110
Fnu4HI GCNGC 7 cut(s) 53, 108, 150, 228, 288, 291, 294
FokI GGATG 2 cut(s) 176, 214
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 7 cut(s) 53, 108, 150, 228, 288, 291, 294
FspBI CTAG 1 cut(s) 77
GluI GCNGC 7 cut(s) 53, 108, 150, 228, 288, 291, 294
GsaI CCCAGC 1 cut(s) 22
HapII CCGG 1 cut(s) 63
Hin1II CATG 2 cut(s) 74, 114
HinfI GANTC 2 cut(s) 14, 24
HpaII CCGG 1 cut(s) 63
HphI GGTGA 2 cut(s) 107, 206
Hpy188I TCNGA 2 cut(s) 33, 382
Hpy188III TCNNGA 1 cut(s) 71
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 154
HpyCH4IV ACGT 3 cut(s) 102, 154, 233
HpyCH4V TGCA 5 cut(s) 110, 114, 152, 230, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 293, 302
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 3 cut(s) 102, 154, 233
Hsp92II CATG 2 cut(s) 74, 114
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 2 cut(s) 57, 65
LpnPI CCDG 7 cut(s) 32, 76, 177, 249, 341, 363, 368
Lsp1109I GCAGC 7 cut(s) 64, 94, 136, 214, 274, 277, 280
MabI ACCWGGT 1 cut(s) 354
MaeI CTAG 1 cut(s) 77
MaeII ACGT 3 cut(s) 102, 154, 233
MaeIII GTNAC 2 cut(s) 313, 360
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 2 cut(s) 350, 388
MhlI GDGCHC 2 cut(s) 62, 217
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 3 cut(s) 133, 175, 337
MroXI GAANNNNTTC 1 cut(s) 121
MseI TTAA 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
MwoI GCNNNNNNNGC 3 cut(s) 149, 293, 302
NdeII GATC 1 cut(s) 73
NlaIII CATG 2 cut(s) 74, 114
NlaIV GGNNCC 2 cut(s) 348, 389
NmuCI GTSAC 1 cut(s) 360
NspI RCATGY 1 cut(s) 114
PaeI GCATGC 1 cut(s) 114
PagI TCATGA 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 7 cut(s) 54, 109, 151, 229, 289, 292, 295
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
Ppu21I YACGTR 2 cut(s) 103, 155
PpuMI RGGWCCY 1 cut(s) 387
Psp124BI GAGCTC 1 cut(s) 62
Psp5II RGGWCCY 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 354
PspFI CCCAGC 1 cut(s) 18
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 2 cut(s) 348, 389
PspPI GGNCC 2 cut(s) 322, 387
PspPPI RGGWCCY 1 cut(s) 387
PstNI CAGNNNCTG 1 cut(s) 185
RsaI GTAC 2 cut(s) 136, 178
RsaNI GTAC 2 cut(s) 135, 177
SacI GAGCTC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 7 cut(s) 53, 108, 150, 228, 288, 291, 294
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 2 cut(s) 322, 387
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 2 cut(s) 62, 217
SexAI ACCWGGT 1 cut(s) 354
SinI GGWCC 2 cut(s) 322, 387
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SnaBI TACGTA 1 cut(s) 103
SphI GCATGC 1 cut(s) 114
SsiI CCGC 1 cut(s) 55
SspMI CTAG 1 cut(s) 77
SstI GAGCTC 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 354
TaiI ACGT 3 cut(s) 105, 157, 236
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseFI GTSAC 1 cut(s) 360
TseI GCWGC 7 cut(s) 52, 107, 149, 227, 287, 290, 293
Tsp45I GTSAC 1 cut(s) 360
TspDTI ATGAA 3 cut(s) 180, 351, 384
VpaK11BI GGWCC 2 cut(s) 322, 387
XceI RCATGY 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 121
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.